Literature DB >> 31793851

Deep Learning Enables Automatic Classification of Emphysema Pattern at CT.

Stephen M Humphries1, Aleena M Notary1, Juan Pablo Centeno1, Matthew J Strand1, James D Crapo1, Edwin K Silverman1, David A Lynch1.   

Abstract

BackgroundPattern of emphysema at chest CT, scored visually by using the Fleischner Society system, is associated with physiologic impairment and mortality risk.PurposeTo determine whether participant-level emphysema pattern could predict impairment and mortality when classified by using a deep learning method.Materials and MethodsThis retrospective analysis of Genetic Epidemiology of COPD (COPDGene) study participants enrolled between 2007 and 2011 included those with baseline CT, visual emphysema scores, and survival data through 2018. Participants were partitioned into nonoverlapping sets of 2407 for algorithm training, 100 for validation and parameter tuning, and 7143 for testing. A deep learning algorithm using convolutional neural network and long short-term memory architectures was trained to classify pattern of emphysema according to Fleischner criteria. Deep learning scores were compared with visual scores and clinical parameters including pulmonary function tests. Cox proportional hazard models were used to evaluate relationships between emphysema scores and survival. The algorithm was also tested by using CT and clinical data in 1962 participants enrolled in the Evaluation of COPD Longitudinally to Identify Predictive Surrogate End-points (ECLIPSE) study.ResultsA total of 7143 COPDGene participants (mean age ± standard deviation, 59.8 years ± 8.9; 3734 men and 3409 women) were evaluated. Deep learning emphysema classifications were associated with impaired pulmonary function tests, 6-minute walk distance, and St George's Respiratory Questionnaire at univariate analysis (P < .001 for each). Testing in the ECLIPSE cohort showed similar associations (P < .001). In the COPDGene test cohort, deep learning emphysema classification improved the fit of linear mixed models in the prediction of these clinical parameters compared with visual scoring (P < .001). Compared with participants without emphysema, mortality was greater in participants classified by the deep learning algorithm as having any grade of emphysema (adjusted hazard ratios were 1.5, 1.7, 2.9, 5.3, and 9.7, respectively, for trace, mild, moderate, confluent, and advanced destructive emphysema; P < .05).ConclusionDeep learning automation of the Fleischner grade of emphysema at chest CT is associated with clinical measures of pulmonary insufficiency and the risk of mortality.© RSNA, 2019Online supplemental material is available for this article.

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Year:  2019        PMID: 31793851      PMCID: PMC6996603          DOI: 10.1148/radiol.2019191022

Source DB:  PubMed          Journal:  Radiology        ISSN: 0033-8419            Impact factor:   11.105


  27 in total

1.  Quantifying the extent of emphysema: factors associated with radiologists' estimations and quantitative indices of emphysema severity using the ECLIPSE cohort.

Authors:  Hester A Gietema; Nestor L Müller; Paola V Nasute Fauerbach; Sanjay Sharma; Lisa D Edwards; Pat G Camp; Harvey O Coxson
Journal:  Acad Radiol       Date:  2011-03-09       Impact factor: 3.173

2.  Deep Learning at Chest Radiography: Automated Classification of Pulmonary Tuberculosis by Using Convolutional Neural Networks.

Authors:  Paras Lakhani; Baskaran Sundaram
Journal:  Radiology       Date:  2017-04-24       Impact factor: 11.105

3.  Visual Assessment of Chest Computed Tomographic Images Is Independently Useful for Genetic Association Analysis in Studies of Chronic Obstructive Pulmonary Disease.

Authors:  Eitan Halper-Stromberg; Michael H Cho; Carla Wilson; Dipti Nevrekar; James D Crapo; George Washko; Raúl San José Estépar; David A Lynch; Edwin K Silverman; Sonia Leach; Peter J Castaldi
Journal:  Ann Am Thorac Soc       Date:  2017-01

4.  Development and Validation of a Deep Learning Algorithm for Detection of Diabetic Retinopathy in Retinal Fundus Photographs.

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Journal:  JAMA       Date:  2016-12-13       Impact factor: 56.272

Review 5.  Improving Detection of Early Chronic Obstructive Pulmonary Disease.

Authors:  Wassim W Labaki; MeiLan K Han
Journal:  Ann Am Thorac Soc       Date:  2018-12

6.  Evaluation of COPD Longitudinally to Identify Predictive Surrogate End-points (ECLIPSE).

Authors:  J Vestbo; W Anderson; H O Coxson; C Crim; F Dawber; L Edwards; G Hagan; K Knobil; D A Lomas; W MacNee; E K Silverman; R Tal-Singer
Journal:  Eur Respir J       Date:  2008-01-23       Impact factor: 16.671

7.  Distinct quantitative computed tomography emphysema patterns are associated with physiology and function in smokers.

Authors:  Peter J Castaldi; Raúl San José Estépar; Carlos S Mendoza; Craig P Hersh; Nan Laird; James D Crapo; David A Lynch; Edwin K Silverman; George R Washko
Journal:  Am J Respir Crit Care Med       Date:  2013-11-01       Impact factor: 21.405

8.  Features of COPD as Predictors of Lung Cancer.

Authors:  Laurie L Carr; Sean Jacobson; David A Lynch; Marilyn G Foreman; Eric L Flenaugh; Craig P Hersh; Frank C Sciurba; David O Wilson; Jessica C Sieren; Patrick Mulhall; Victor Kim; C Matthew Kinsey; Russell P Bowler
Journal:  Chest       Date:  2018-02-13       Impact factor: 9.410

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Authors:  Jingkuan Song; Jie Yang; Benjamin Smith; Pallavi Balte; Eric A Hoffman; R Graham Barr; Andrew F Laine; Elsa D Angelini
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2017-06-19

10.  CT-based Visual Classification of Emphysema: Association with Mortality in the COPDGene Study.

Authors:  David A Lynch; Camille M Moore; Carla Wilson; Dipti Nevrekar; Theodore Jennermann; Stephen M Humphries; John H M Austin; Philippe A Grenier; Hans-Ulrich Kauczor; MeiLan K Han; Elizabeth A Regan; Barry J Make; Russell P Bowler; Terri H Beaty; Douglas Curran-Everett; John E Hokanson; Jeffrey L Curtis; Edwin K Silverman; James D Crapo
Journal:  Radiology       Date:  2018-05-15       Impact factor: 11.105

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Authors:  Fernando U Kay
Journal:  Radiol Cardiothorac Imaging       Date:  2020-08-27

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Review 3.  Recent Advances in Molecular Diagnosis of Pulmonary Fibrosis for Precision Medicine.

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5.  Emphysema Progression at CT by Deep Learning Predicts Functional Impairment and Mortality: Results from the COPDGene Study.

Authors:  Andrea S Oh; David Baraghoshi; David A Lynch; Samuel Y Ash; James D Crapo; Stephen M Humphries
Journal:  Radiology       Date:  2022-05-17       Impact factor: 29.146

6.  Automated CT Staging of Chronic Obstructive Pulmonary Disease Severity for Predicting Disease Progression and Mortality with a Deep Learning Convolutional Neural Network.

Authors:  Kyle A Hasenstab; Nancy Yuan; Tara Retson; Douglas J Conrad; Seth Kligerman; David A Lynch; Albert Hsiao
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7.  Comparison of CT Lung Density Measurements between Standard Full-Dose and Reduced-Dose Protocols.

Authors:  Charles R Hatt; Andrea S Oh; Nancy A Obuchowski; Jean-Paul Charbonnier; David A Lynch; Stephen M Humphries
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8.  Quantitative Chest CT in COPD: Can Deep Learning Enable the Transition?

Authors:  Mannudeep K Kalra; Shadi Ebrahimian
Journal:  Radiol Cardiothorac Imaging       Date:  2021-04-08

9.  Progress and Research Priorities in Imaging Genomics for Heart and Lung Disease: Summary of an NHLBI Workshop.

Authors:  Donna K Arnett; Ramachandran S Vasan; Matthew Nayor; Li Shen; Gary M Hunninghake; Peter Kochunov; R Graham Barr; David A Bluemke; Ulrich Broeckel; Peter Caravan; Susan Cheng; Paul S de Vries; Udo Hoffmann; Márton Kolossváry; Huiqing Li; James Luo; Elizabeth M McNally; George Thanassoulis
Journal:  Circ Cardiovasc Imaging       Date:  2021-08-13       Impact factor: 8.589

10.  A Comparative Evaluation of Computed Tomography Images for the Classification of Spirometric Severity of the Chronic Obstructive Pulmonary Disease with Deep Learning.

Authors:  Hiroyuki Sugimori; Kaoruko Shimizu; Hironi Makita; Masaru Suzuki; Satoshi Konno
Journal:  Diagnostics (Basel)       Date:  2021-05-21
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