Literature DB >> 29189772

Production of knock-in mice in a single generation from embryonic stem cells.

Hideki Ukai1, Hiroshi Kiyonari2,3, Hiroki R Ueda1,4.   

Abstract

The system-level identification and analysis of molecular networks in mammals can be accelerated by 'next-generation' genetics, defined as genetics that does not require crossing of multiple generations of animals in order to achieve the desired genetic makeup. We have established a highly efficient procedure for producing knock-in (KI) mice within a single generation, by optimizing the genome-editing protocol for KI embryonic stem (ES) cells and the protocol for the generation of fully ES-cell-derived mice (ES mice). Using this protocol, the production of chimeric mice is eliminated, and, therefore, there is no requirement for the crossing of chimeric mice to produce mice that carry the KI gene in all cells of the body. Our procedure thus shortens the time required to produce KI ES mice from about a year to ∼3 months. Various kinds of KI ES mice can be produced with a minimized amount of work, facilitating the elucidation of organism-level phenomena using a systems biology approach. In this report, we describe the basic technologies and protocols for this procedure, and discuss the current challenges for next-generation mammalian genetics in organism-level systems biology studies.

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Year:  2017        PMID: 29189772     DOI: 10.1038/nprot.2017.110

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  70 in total

1.  Production of mouse chimeras by aggregating pluripotent stem cells with embryos.

Authors:  Andras Nagy; Kristina Nagy; Marina Gertsenstein
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

2.  Efficient genome modification by CRISPR-Cas9 nickase with minimal off-target effects.

Authors:  Bin Shen; Wensheng Zhang; Jun Zhang; Jiankui Zhou; Jianying Wang; Li Chen; Lu Wang; Alex Hodgkins; Vivek Iyer; Xingxu Huang; William C Skarnes
Journal:  Nat Methods       Date:  2014-03-02       Impact factor: 28.547

3.  Knockout-Rescue Embryonic Stem Cell-Derived Mouse Reveals Circadian-Period Control by Quality and Quantity of CRY1.

Authors:  Koji L Ode; Hideki Ukai; Etsuo A Susaki; Ryohei Narumi; Katsuhiko Matsumoto; Junko Hara; Naoshi Koide; Takaya Abe; Masato T Kanemaki; Hiroshi Kiyonari; Hiroki R Ueda
Journal:  Mol Cell       Date:  2016-12-22       Impact factor: 17.970

4.  Efficient generation of germ line transmitting chimeras from C57BL/6N ES cells by aggregation with outbred host embryos.

Authors:  Marina Gertsenstein; Lauryl M J Nutter; Tammy Reid; Monica Pereira; William L Stanford; Janet Rossant; Andras Nagy
Journal:  PLoS One       Date:  2010-06-22       Impact factor: 3.240

5.  Mammalian Reverse Genetics without Crossing Reveals Nr3a as a Short-Sleeper Gene.

Authors:  Genshiro A Sunagawa; Kenta Sumiyama; Maki Ukai-Tadenuma; Dimitri Perrin; Hiroshi Fujishima; Hideki Ukai; Osamu Nishimura; Shoi Shi; Rei-Ichiro Ohno; Ryohei Narumi; Yoshihiro Shimizu; Daisuke Tone; Koji L Ode; Shigehiro Kuraku; Hiroki R Ueda
Journal:  Cell Rep       Date:  2016-01-07       Impact factor: 9.423

6.  Hybrid embryonic stem cell-derived tetraploid mice show apparently normal morphological, physiological, and neurological characteristics.

Authors:  Frieder Schwenk; Branko Zevnik; Jens Brüning; Mathias Röhl; Antje Willuweit; Anja Rode; Thomas Hennek; Gunther Kauselmann; Rudolf Jaenisch; Ralf Kühn
Journal:  Mol Cell Biol       Date:  2003-06       Impact factor: 4.272

7.  Microhomology-mediated end-joining-dependent integration of donor DNA in cells and animals using TALENs and CRISPR/Cas9.

Authors:  Shota Nakade; Takuya Tsubota; Yuto Sakane; Satoshi Kume; Naoaki Sakamoto; Masanobu Obara; Takaaki Daimon; Hideki Sezutsu; Takashi Yamamoto; Tetsushi Sakuma; Ken-ichi T Suzuki
Journal:  Nat Commun       Date:  2014-11-20       Impact factor: 14.919

8.  Large genomic fragment deletion and functional gene cassette knock-in via Cas9 protein mediated genome editing in one-cell rodent embryos.

Authors:  Liren Wang; Yanjiao Shao; Yuting Guan; Liang Li; Lijuan Wu; Fangrui Chen; Meizhen Liu; Huaqing Chen; Yanlin Ma; Xueyun Ma; Mingyao Liu; Dali Li
Journal:  Sci Rep       Date:  2015-12-01       Impact factor: 4.379

9.  Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells.

Authors:  Kathryn Blaschke; Kevin T Ebata; Mohammad M Karimi; Jorge A Zepeda-Martínez; Preeti Goyal; Sahasransu Mahapatra; Angela Tam; Diana J Laird; Martin Hirst; Anjana Rao; Matthew C Lorincz; Miguel Ramalho-Santos
Journal:  Nature       Date:  2013-06-30       Impact factor: 49.962

10.  Highly efficient generation of biallelic reporter gene knock-in mice via CRISPR-mediated genome editing of ESCs.

Authors:  Yanliang Wang; Junhong Li; Jinzhu Xiang; Bingqiang Wen; Haiyuan Mu; Wei Zhang; Jianyong Han
Journal:  Protein Cell       Date:  2016-02       Impact factor: 14.870

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  8 in total

1.  Methyl-CpG-binding domain 3 (Mbd3) is an important regulator for apoptosis in mouse embryonic stem cells.

Authors:  Yujian Dai; Jinshan Li; Mingyang Li; Zhihui Liu; Jiao Liu; Liyou An; Fuliang Du
Journal:  Am J Transl Res       Date:  2020-12-15       Impact factor: 4.060

Review 2.  Towards organism-level systems biology by next-generation genetics and whole-organ cell profiling.

Authors:  Yoichi Minami; Yufei Yuan; Hiroki R Ueda
Journal:  Biophys Rev       Date:  2021-11-18

3.  Easy and efficient production of completely embryonic-stem-cell-derived mice using a micro-aggregation device.

Authors:  Kenta Sumiyama; Naomi Matsumoto; Junko Garçon-Yoshida; Hideki Ukai; Hiroki R Ueda; Yo Tanaka
Journal:  PLoS One       Date:  2018-09-19       Impact factor: 3.240

Review 4.  Molecular Mechanisms of REM Sleep.

Authors:  Rikuhiro G Yamada; Hiroki R Ueda
Journal:  Front Neurosci       Date:  2020-01-14       Impact factor: 4.677

5.  Distinct phosphorylation states of mammalian CaMKIIβ control the induction and maintenance of sleep.

Authors:  Daisuke Tone; Koji L Ode; Qianhui Zhang; Hiroshi Fujishima; Rikuhiro G Yamada; Yoshiki Nagashima; Katsuhiko Matsumoto; Zhiqing Wen; Shota Y Yoshida; Tomoki T Mitani; Yuki Arisato; Rei-Ichiro Ohno; Maki Ukai-Tadenuma; Junko Yoshida Garçon; Mari Kaneko; Shoi Shi; Hideki Ukai; Kazunari Miyamichi; Takashi Okada; Kenta Sumiyama; Hiroshi Kiyonari; Hiroki R Ueda
Journal:  PLoS Biol       Date:  2022-10-04       Impact factor: 9.593

6.  Investigation of the molecular biology underlying the pronounced high gene targeting frequency at the Myh9 gene locus in mouse embryonic stem cells.

Authors:  Lei Tan; Yi Hu; Yalan Li; Lingchen Yang; Xiong Cai; Wei Liu; Jiayi He; Yingxin Wu; Tanbin Liu; Naidong Wang; Yi Yang; Robert S Adelstein; Aibing Wang
Journal:  PLoS One       Date:  2020-03-30       Impact factor: 3.240

7.  Generation of embryonic stem cells derived from the inner cell mass of blastocysts of outbred ICR mice.

Authors:  Na Rae Han; Song Baek; Hwa-Young Kim; Kwon Young Lee; Jung Im Yun; Jung Hoon Choi; Eunsong Lee; Choon-Keun Park; Seung Tae Lee
Journal:  Anim Cells Syst (Seoul)       Date:  2020-04-16       Impact factor: 1.815

8.  Rapid and easy-to-use ES cell manipulation device with a small groove near culturing wells.

Authors:  Shun-Ichi Funano; Daisuke Tone; Hideki Ukai; Hiroki R Ueda; Yo Tanaka
Journal:  BMC Res Notes       Date:  2020-10-05
  8 in total

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