Literature DB >> 29170230

Molecular and cellular reorganization of neural circuits in the human lineage.

André M M Sousa1, Ying Zhu1, Mary Ann Raghanti2, Robert R Kitchen3,4, Marco Onorati1,5, Andrew T N Tebbenkamp1, Bernardo Stutz6, Kyle A Meyer1, Mingfeng Li1, Yuka Imamura Kawasawa1,7, Fuchen Liu1, Raquel Garcia Perez8, Marta Mele8, Tiago Carvalho8, Mario Skarica1, Forrest O Gulden1, Mihovil Pletikos1, Akemi Shibata1, Alexa R Stephenson2, Melissa K Edler2, John J Ely9, John D Elsworth4, Tamas L Horvath1,6, Patrick R Hof10, Thomas M Hyde11, Joel E Kleinman11, Daniel R Weinberger11, Mark Reimers12, Richard P Lifton13,14,15, Shrikant M Mane16, James P Noonan13, Matthew W State17, Ed S Lein18, James A Knowles19, Tomas Marques-Bonet8,20,21, Chet C Sherwood22, Mark B Gerstein3, Nenad Sestan23,4,6,13,24.   

Abstract

To better understand the molecular and cellular differences in brain organization between human and nonhuman primates, we performed transcriptome sequencing of 16 regions of adult human, chimpanzee, and macaque brains. Integration with human single-cell transcriptomic data revealed global, regional, and cell-type-specific species expression differences in genes representing distinct functional categories. We validated and further characterized the human specificity of genes enriched in distinct cell types through histological and functional analyses, including rare subpallial-derived interneurons expressing dopamine biosynthesis genes enriched in the human striatum and absent in the nonhuman African ape neocortex. Our integrated analysis of the generated data revealed diverse molecular and cellular features of the phylogenetic reorganization of the human brain across multiple levels, with relevance for brain function and disease.
Copyright © 2017, American Association for the Advancement of Science.

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Year:  2017        PMID: 29170230      PMCID: PMC5776074          DOI: 10.1126/science.aan3456

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  70 in total

1.  Species-specific distributions of tyrosine hydroxylase-immunoreactive neurons in the prefrontal cortex of anthropoid primates.

Authors:  M A Raghanti; M A Spocter; C D Stimpson; J M Erwin; C J Bonar; J M Allman; P R Hof; C C Sherwood
Journal:  Neuroscience       Date:  2008-11-07       Impact factor: 3.590

2.  Transcriptome-wide discovery of microRNA binding sites in human brain.

Authors:  Ryan L Boudreau; Peng Jiang; Brian L Gilmore; Ryan M Spengler; Rebecca Tirabassi; Jay A Nelson; Christopher A Ross; Yi Xing; Beverly L Davidson
Journal:  Neuron       Date:  2014-01-02       Impact factor: 17.173

3.  Tyrosine hydroxylase-immunoreactive neurons are decreased in number in the cerebral cortex of Parkinson's disease.

Authors:  T Fukuda; J Takahashi; J Tanaka
Journal:  Neuropathology       Date:  1999-01       Impact factor: 1.906

4.  Synthetic spike-in standards for RNA-seq experiments.

Authors:  Lichun Jiang; Felix Schlesinger; Carrie A Davis; Yu Zhang; Renhua Li; Marc Salit; Thomas R Gingeras; Brian Oliver
Journal:  Genome Res       Date:  2011-08-04       Impact factor: 9.043

5.  Neurotransmitter switching in the adult brain regulates behavior.

Authors:  Davide Dulcis; Pouya Jamshidi; Stefan Leutgeb; Nicholas C Spitzer
Journal:  Science       Date:  2013-04-26       Impact factor: 47.728

Review 6.  A natural history of the human mind: tracing evolutionary changes in brain and cognition.

Authors:  Chet C Sherwood; Francys Subiaul; Tadeusz W Zawidzki
Journal:  J Anat       Date:  2008-04       Impact factor: 2.610

7.  Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain.

Authors:  Blue B Lake; Rizi Ai; Gwendolyn E Kaeser; Neeraj S Salathia; Yun C Yung; Rui Liu; Andre Wildberg; Derek Gao; Ho-Lim Fung; Song Chen; Raakhee Vijayaraghavan; Julian Wong; Allison Chen; Xiaoyan Sheng; Fiona Kaper; Richard Shen; Mostafa Ronaghi; Jian-Bing Fan; Wei Wang; Jerold Chun; Kun Zhang
Journal:  Science       Date:  2016-06-24       Impact factor: 47.728

Review 8.  Insights into the molecular basis of sperm-egg recognition in mammals.

Authors:  Tanya Hoodbhoy; Jurrien Dean
Journal:  Reproduction       Date:  2004-04       Impact factor: 3.906

9.  Spatio-temporal transcriptome of the human brain.

Authors:  Hyo Jung Kang; Yuka Imamura Kawasawa; Feng Cheng; Ying Zhu; Xuming Xu; Mingfeng Li; André M M Sousa; Mihovil Pletikos; Kyle A Meyer; Goran Sedmak; Tobias Guennel; Yurae Shin; Matthew B Johnson; Zeljka Krsnik; Simone Mayer; Sofia Fertuzinhos; Sheila Umlauf; Steven N Lisgo; Alexander Vortmeyer; Daniel R Weinberger; Shrikant Mane; Thomas M Hyde; Anita Huttner; Mark Reimers; Joel E Kleinman; Nenad Sestan
Journal:  Nature       Date:  2011-10-26       Impact factor: 49.962

10.  Great ape genetic diversity and population history.

Authors:  Javier Prado-Martinez; Peter H Sudmant; Jeffrey M Kidd; Heng Li; Joanna L Kelley; Belen Lorente-Galdos; Krishna R Veeramah; August E Woerner; Timothy D O'Connor; Gabriel Santpere; Alexander Cagan; Christoph Theunert; Ferran Casals; Hafid Laayouni; Kasper Munch; Asger Hobolth; Anders E Halager; Maika Malig; Jessica Hernandez-Rodriguez; Irene Hernando-Herraez; Kay Prüfer; Marc Pybus; Laurel Johnstone; Michael Lachmann; Can Alkan; Dorina Twigg; Natalia Petit; Carl Baker; Fereydoun Hormozdiari; Marcos Fernandez-Callejo; Marc Dabad; Michael L Wilson; Laurie Stevison; Cristina Camprubí; Tiago Carvalho; Aurora Ruiz-Herrera; Laura Vives; Marta Mele; Teresa Abello; Ivanela Kondova; Ronald E Bontrop; Anne Pusey; Felix Lankester; John A Kiyang; Richard A Bergl; Elizabeth Lonsdorf; Simon Myers; Mario Ventura; Pascal Gagneux; David Comas; Hans Siegismund; Julie Blanc; Lidia Agueda-Calpena; Marta Gut; Lucinda Fulton; Sarah A Tishkoff; James C Mullikin; Richard K Wilson; Ivo G Gut; Mary Katherine Gonder; Oliver A Ryder; Beatrice H Hahn; Arcadi Navarro; Joshua M Akey; Jaume Bertranpetit; David Reich; Thomas Mailund; Mikkel H Schierup; Christina Hvilsom; Aida M Andrés; Jeffrey D Wall; Carlos D Bustamante; Michael F Hammer; Evan E Eichler; Tomas Marques-Bonet
Journal:  Nature       Date:  2013-07-03       Impact factor: 49.962

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  71 in total

1.  Regional Heterogeneity in Gene Expression, Regulation, and Coherence in the Frontal Cortex and Hippocampus across Development and Schizophrenia.

Authors:  Leonardo Collado-Torres; Emily E Burke; Amy Peterson; JooHeon Shin; Richard E Straub; Anandita Rajpurohit; Stephen A Semick; William S Ulrich; Amanda J Price; Cristian Valencia; Ran Tao; Amy Deep-Soboslay; Thomas M Hyde; Joel E Kleinman; Daniel R Weinberger; Andrew E Jaffe
Journal:  Neuron       Date:  2019-06-04       Impact factor: 17.173

2.  Multimodal Single-Cell Analysis Reveals Physiological Maturation in the Developing Human Neocortex.

Authors:  Simone Mayer; Jiadong Chen; Dmitry Velmeshev; Andreas Mayer; Ugomma C Eze; Aparna Bhaduri; Carlos E Cunha; Diane Jung; Arpana Arjun; Emmy Li; Beatriz Alvarado; Shaohui Wang; Nils Lovegren; Michael L Gonzales; Lukasz Szpankowski; Anne Leyrat; Jay A A West; Georgia Panagiotakos; Arturo Alvarez-Buylla; Mercedes F Paredes; Tomasz J Nowakowski; Alex A Pollen; Arnold R Kriegstein
Journal:  Neuron       Date:  2019-02-12       Impact factor: 17.173

3.  Comparative transcriptomics of 3 high-altitude passerine birds and their low-altitude relatives.

Authors:  Yan Hao; Ying Xiong; Yalin Cheng; Gang Song; Chenxi Jia; Yanhua Qu; Fumin Lei
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-24       Impact factor: 11.205

Review 4.  Lost in Translation: Traversing the Complex Path from Genomics to Therapeutics in Autism Spectrum Disorder.

Authors:  Nenad Sestan; Matthew W State
Journal:  Neuron       Date:  2018-10-24       Impact factor: 17.173

Review 5.  Shared and derived features of cellular diversity in the human cerebral cortex.

Authors:  Daniel J Miller; Aparna Bhaduri; Nenad Sestan; Arnold Kriegstein
Journal:  Curr Opin Neurobiol       Date:  2019-01-21       Impact factor: 6.627

6.  Modeling the Evolution of Human Brain Development Using Organoids.

Authors:  Sydney Keaton Muchnik; Belen Lorente-Galdos; Gabriel Santpere; Nenad Sestan
Journal:  Cell       Date:  2019-11-27       Impact factor: 41.582

Review 7.  The CeNGEN Project: The Complete Gene Expression Map of an Entire Nervous System.

Authors:  Marc Hammarlund; Oliver Hobert; David M Miller; Nenad Sestan
Journal:  Neuron       Date:  2018-08-08       Impact factor: 17.173

Review 8.  Brain vulnerability and viability after ischaemia.

Authors:  Stefano G Daniele; Georg Trummer; Konstantin A Hossmann; Zvonimir Vrselja; Christoph Benk; Kevin T Gobeske; Domagoj Damjanovic; David Andrijevic; Jan-Steffen Pooth; David Dellal; Friedhelm Beyersdorf; Nenad Sestan
Journal:  Nat Rev Neurosci       Date:  2021-07-21       Impact factor: 34.870

Review 9.  Human organoids to model the developing human neocortex in health and disease.

Authors:  Shokoufeh Khakipoor; Elizabeth E Crouch; Simone Mayer
Journal:  Brain Res       Date:  2020-03-30       Impact factor: 3.252

Review 10.  Development and Functional Diversification of Cortical Interneurons.

Authors:  Lynette Lim; Da Mi; Alfredo Llorca; Oscar Marín
Journal:  Neuron       Date:  2018-10-24       Impact factor: 17.173

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