| Literature DB >> 29152350 |
H Purandara1,2, Sabine Foro3, B Thimme Gowda1,4.
Abstract
The mol-ecule of the title Schiff baseEntities:
Keywords: C—H⋯O hydrogen bond; Schiff base; conformation; crystal structure
Year: 2017 PMID: 29152350 PMCID: PMC5683490 DOI: 10.1107/S2056989017014669
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, with displacement ellipsoids drawn at the 50% probability level.
Figure 3The molecular packing of the title compound, with hydrogen bonding shown as dashed lines.
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C1–C6 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.82 (2) | 2.24 (2) | 3.0142 (18) | 158 (2) |
| N2—H2 | 0.86 (2) | 2.02 (2) | 2.863 (2) | 168 (2) |
| C3—H3⋯O2ii | 0.93 | 2.59 | 3.442 (2) | 152 |
| C14—H14⋯O5iii | 0.93 | 2.56 | 3.484 (2) | 171 |
| C18—H18 | 0.96 | 2.56 | 3.446 (3) | 154 |
| C15—H15⋯ | 0.93 | 2.66 | 3.564 (2) | 164 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .
Figure 2The hydrogen-bonding pattern (dashed lines) in the title compound.
Figure 4The C—H⋯O interactions (blue dotted lines) observed in the structure of the title compound
Experimental details
| Crystal data | |
| Chemical formula | C16H16N4O5S·C3H7NO |
|
| 449.48 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 293 |
|
| 8.3515 (9), 10.5778 (9), 13.673 (1) |
| α, β, γ (°) | 107.609 (7), 98.954 (8), 106.505 (8) |
|
| 1064.57 (18) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.20 |
| Crystal size (mm) | 0.40 × 0.40 × 0.22 |
| Data collection | |
| Diffractometer | Oxford Diffraction Xcalibur diffractometer with a Sapphire CCD detector |
| Absorption correction | Multi-scan ( |
|
| 0.925, 0.958 |
| No. of measured, independent and observed [ | 7611, 4347, 3592 |
|
| 0.010 |
| (sin θ/λ)max (Å−1) | 0.625 |
| Refinement | |
|
| 0.039, 0.108, 1.04 |
| No. of reflections | 4347 |
| No. of parameters | 289 |
| No. of restraints | 2 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.32, −0.37 |
Computer programs: CrysAlis CCD and CrysAlis RED (Oxford Diffraction, 2009 ▸), SHELXS97 and SHELXTL (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), Mercury (Macrae et al., 2008 ▸) and PLATON (Spek, 2009 ▸).
| C16H16N4O5S·C3H7NO | |
| Triclinic, | |
| Mo | |
| Cell parameters from 3760 reflections | |
| θ = 2.6–27.8° | |
| α = 107.609 (7)° | µ = 0.20 mm−1 |
| β = 98.954 (8)° | |
| γ = 106.505 (8)° | Prism, colourless |
| 0.40 × 0.40 × 0.22 mm |
| Oxford Diffraction Xcalibur single-crystal X-ray diffractometer with Sapphire CCD Detector | 3592 reflections with |
| Rotation method data acquisition using ω scans | |
| Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009) | θmax = 26.4°, θmin = 2.6° |
| 7611 measured reflections | |
| 4347 independent reflections |
| Refinement on | 2 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.005 | |
| 4347 reflections | Δρmax = 0.32 e Å−3 |
| 289 parameters | Δρmin = −0.37 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.2529 (2) | 0.80172 (17) | 0.30177 (12) | 0.0350 (3) | |
| C2 | 0.3764 (2) | 0.73865 (18) | 0.28367 (13) | 0.0395 (4) | |
| H2 | 0.3431 | 0.6405 | 0.2546 | 0.047* | |
| C3 | 0.5479 (2) | 0.8222 (2) | 0.30897 (14) | 0.0436 (4) | |
| H3 | 0.6298 | 0.7794 | 0.2971 | 0.052* | |
| C4 | 0.6013 (2) | 0.9691 (2) | 0.35194 (14) | 0.0479 (4) | |
| C5 | 0.4745 (3) | 1.0292 (2) | 0.3654 (2) | 0.0671 (6) | |
| H5 | 0.5067 | 1.1274 | 0.3914 | 0.080* | |
| C6 | 0.3022 (3) | 0.9472 (2) | 0.34106 (17) | 0.0567 (5) | |
| H6 | 0.2198 | 0.9898 | 0.3511 | 0.068* | |
| C7 | −0.0943 (2) | 0.74344 (18) | 0.10290 (13) | 0.0385 (4) | |
| H7A | −0.0028 | 0.8356 | 0.1359 | 0.046* | |
| H7B | −0.1997 | 0.7535 | 0.1198 | 0.046* | |
| C8 | −0.1211 (2) | 0.69253 (16) | −0.01586 (13) | 0.0348 (3) | |
| C9 | −0.2478 (2) | 0.96612 (17) | −0.05202 (13) | 0.0356 (3) | |
| H9 | −0.2613 | 0.9393 | −0.1250 | 0.043* | |
| C10 | −0.2839 (2) | 1.09163 (16) | 0.00553 (12) | 0.0340 (3) | |
| C11 | −0.2613 (3) | 1.13753 (19) | 0.11526 (14) | 0.0476 (4) | |
| H11 | −0.2174 | 1.0903 | 0.1539 | 0.057* | |
| C12 | −0.3032 (3) | 1.2520 (2) | 0.16685 (14) | 0.0503 (5) | |
| H12 | −0.2892 | 1.2819 | 0.2400 | 0.060* | |
| C13 | −0.3662 (2) | 1.32173 (17) | 0.10891 (13) | 0.0386 (4) | |
| C14 | −0.3851 (2) | 1.28192 (18) | 0.00117 (14) | 0.0415 (4) | |
| H14 | −0.4242 | 1.3322 | −0.0364 | 0.050* | |
| C15 | −0.3449 (2) | 1.16557 (18) | −0.05016 (13) | 0.0401 (4) | |
| H15 | −0.3590 | 1.1364 | −0.1233 | 0.048* | |
| C16 | 0.7899 (3) | 1.0600 (3) | 0.3827 (2) | 0.0686 (6) | |
| H16A | 0.8405 | 1.0282 | 0.3258 | 0.103* | |
| H16B | 0.8491 | 1.0529 | 0.4458 | 0.103* | |
| H16C | 0.8002 | 1.1568 | 0.3961 | 0.103* | |
| C17 | 0.2091 (3) | 0.3550 (2) | 0.33832 (16) | 0.0609 (6) | |
| H17 | 0.1971 | 0.4207 | 0.3081 | 0.073* | |
| C18 | 0.2597 (4) | 0.3016 (3) | 0.49621 (18) | 0.0765 (7) | |
| H18A | 0.3792 | 0.3327 | 0.5340 | 0.115* | |
| H18B | 0.2256 | 0.2072 | 0.4450 | 0.115* | |
| H18C | 0.1896 | 0.3022 | 0.5456 | 0.115* | |
| C19 | 0.2526 (5) | 0.5369 (3) | 0.50861 (19) | 0.0921 (10) | |
| H19A | 0.2398 | 0.5910 | 0.4647 | 0.138* | |
| H19B | 0.3644 | 0.5825 | 0.5590 | 0.138* | |
| H19C | 0.1641 | 0.5308 | 0.5460 | 0.138* | |
| N1 | −0.04825 (19) | 0.64431 (15) | 0.14518 (11) | 0.0387 (3) | |
| H1N | −0.016 (2) | 0.5851 (18) | 0.1079 (14) | 0.046* | |
| N2 | −0.17143 (19) | 0.77528 (14) | −0.06336 (11) | 0.0385 (3) | |
| H2N | −0.181 (2) | 0.758 (2) | −0.1298 (12) | 0.046* | |
| N3 | −0.19806 (17) | 0.89339 (13) | −0.00295 (10) | 0.0347 (3) | |
| N4 | −0.4191 (2) | 1.43967 (16) | 0.16299 (13) | 0.0497 (4) | |
| N5 | 0.2367 (2) | 0.39543 (18) | 0.44244 (12) | 0.0535 (4) | |
| O1 | 0.02638 (17) | 0.57237 (14) | 0.29491 (11) | 0.0516 (3) | |
| O2 | −0.05327 (16) | 0.78629 (15) | 0.32153 (10) | 0.0501 (3) | |
| O3 | −0.09848 (18) | 0.58545 (13) | −0.06656 (10) | 0.0496 (3) | |
| O4 | −0.4233 (3) | 1.46197 (19) | 0.25518 (13) | 0.0808 (5) | |
| O5 | −0.4588 (2) | 1.50928 (16) | 0.11362 (13) | 0.0681 (4) | |
| O6 | 0.1980 (3) | 0.23973 (17) | 0.27815 (11) | 0.0757 (5) | |
| S1 | 0.03312 (5) | 0.69598 (5) | 0.27126 (3) | 0.03706 (13) |
| C1 | 0.0402 (8) | 0.0406 (9) | 0.0286 (7) | 0.0209 (7) | 0.0080 (6) | 0.0129 (6) |
| C2 | 0.0461 (9) | 0.0387 (9) | 0.0435 (9) | 0.0246 (7) | 0.0132 (7) | 0.0187 (7) |
| C3 | 0.0430 (9) | 0.0543 (11) | 0.0461 (10) | 0.0285 (8) | 0.0133 (7) | 0.0242 (8) |
| C4 | 0.0438 (10) | 0.0525 (11) | 0.0418 (9) | 0.0167 (8) | 0.0063 (7) | 0.0125 (8) |
| C5 | 0.0575 (12) | 0.0384 (10) | 0.0833 (16) | 0.0156 (9) | 0.0118 (11) | −0.0032 (10) |
| C6 | 0.0489 (11) | 0.0439 (10) | 0.0701 (13) | 0.0260 (9) | 0.0140 (9) | 0.0031 (9) |
| C7 | 0.0469 (9) | 0.0381 (8) | 0.0363 (8) | 0.0223 (7) | 0.0093 (7) | 0.0155 (7) |
| C8 | 0.0335 (8) | 0.0330 (8) | 0.0363 (8) | 0.0132 (6) | 0.0063 (6) | 0.0109 (7) |
| C9 | 0.0408 (8) | 0.0348 (8) | 0.0327 (8) | 0.0136 (7) | 0.0085 (6) | 0.0146 (7) |
| C10 | 0.0348 (8) | 0.0321 (8) | 0.0361 (8) | 0.0111 (6) | 0.0076 (6) | 0.0152 (7) |
| C11 | 0.0671 (12) | 0.0460 (10) | 0.0337 (9) | 0.0289 (9) | 0.0038 (8) | 0.0161 (8) |
| C12 | 0.0694 (12) | 0.0498 (11) | 0.0303 (9) | 0.0282 (9) | 0.0057 (8) | 0.0098 (8) |
| C13 | 0.0383 (8) | 0.0332 (8) | 0.0417 (9) | 0.0137 (7) | 0.0074 (7) | 0.0104 (7) |
| C14 | 0.0469 (9) | 0.0421 (9) | 0.0454 (9) | 0.0223 (8) | 0.0120 (7) | 0.0234 (8) |
| C15 | 0.0487 (9) | 0.0440 (9) | 0.0349 (8) | 0.0205 (8) | 0.0122 (7) | 0.0197 (7) |
| C16 | 0.0492 (12) | 0.0686 (14) | 0.0714 (15) | 0.0119 (10) | 0.0067 (10) | 0.0157 (12) |
| C17 | 0.0906 (16) | 0.0637 (13) | 0.0425 (10) | 0.0440 (12) | 0.0159 (10) | 0.0236 (10) |
| C18 | 0.125 (2) | 0.0649 (14) | 0.0463 (12) | 0.0357 (15) | 0.0264 (13) | 0.0263 (11) |
| C19 | 0.148 (3) | 0.0744 (16) | 0.0518 (14) | 0.0653 (18) | 0.0017 (15) | 0.0082 (12) |
| N1 | 0.0462 (8) | 0.0389 (8) | 0.0369 (8) | 0.0245 (6) | 0.0084 (6) | 0.0143 (6) |
| N2 | 0.0517 (8) | 0.0368 (7) | 0.0301 (7) | 0.0211 (6) | 0.0092 (6) | 0.0120 (6) |
| N3 | 0.0391 (7) | 0.0319 (7) | 0.0340 (7) | 0.0150 (6) | 0.0077 (5) | 0.0118 (6) |
| N4 | 0.0467 (9) | 0.0446 (9) | 0.0519 (10) | 0.0204 (7) | 0.0073 (7) | 0.0085 (7) |
| N5 | 0.0735 (11) | 0.0551 (9) | 0.0376 (8) | 0.0337 (9) | 0.0124 (7) | 0.0157 (7) |
| O1 | 0.0566 (8) | 0.0575 (8) | 0.0568 (8) | 0.0243 (6) | 0.0169 (6) | 0.0377 (7) |
| O2 | 0.0494 (7) | 0.0667 (8) | 0.0454 (7) | 0.0334 (6) | 0.0216 (6) | 0.0190 (6) |
| O3 | 0.0665 (8) | 0.0425 (7) | 0.0430 (7) | 0.0318 (6) | 0.0107 (6) | 0.0099 (5) |
| O4 | 0.1144 (14) | 0.0879 (12) | 0.0502 (9) | 0.0643 (11) | 0.0239 (9) | 0.0111 (8) |
| O5 | 0.0834 (11) | 0.0599 (9) | 0.0783 (10) | 0.0475 (8) | 0.0219 (8) | 0.0277 (8) |
| O6 | 0.1306 (15) | 0.0703 (10) | 0.0394 (8) | 0.0556 (10) | 0.0250 (8) | 0.0178 (7) |
| S1 | 0.0401 (2) | 0.0458 (2) | 0.0349 (2) | 0.02253 (18) | 0.01295 (16) | 0.01948 (18) |
| C1—C6 | 1.377 (2) | C13—C14 | 1.374 (2) |
| C1—C2 | 1.393 (2) | C13—N4 | 1.468 (2) |
| C1—S1 | 1.7629 (17) | C14—C15 | 1.381 (2) |
| C2—C3 | 1.376 (2) | C14—H14 | 0.9300 |
| C2—H2 | 0.9300 | C15—H15 | 0.9300 |
| C3—C4 | 1.389 (3) | C16—H16A | 0.9600 |
| C3—H3 | 0.9300 | C16—H16B | 0.9600 |
| C4—C5 | 1.390 (3) | C16—H16C | 0.9600 |
| C4—C16 | 1.507 (3) | C17—O6 | 1.215 (2) |
| C5—C6 | 1.379 (3) | C17—N5 | 1.318 (2) |
| C5—H5 | 0.9300 | C17—H17 | 0.9300 |
| C6—H6 | 0.9300 | C18—N5 | 1.438 (3) |
| C7—N1 | 1.452 (2) | C18—H18A | 0.9600 |
| C7—C8 | 1.505 (2) | C18—H18B | 0.9600 |
| C7—H7A | 0.9700 | C18—H18C | 0.9600 |
| C7—H7B | 0.9700 | C19—N5 | 1.451 (3) |
| C8—O3 | 1.2191 (19) | C19—H19A | 0.9600 |
| C8—N2 | 1.354 (2) | C19—H19B | 0.9600 |
| C9—N3 | 1.274 (2) | C19—H19C | 0.9600 |
| C9—C10 | 1.464 (2) | N1—S1 | 1.6082 (14) |
| C9—H9 | 0.9300 | N1—H1N | 0.818 (15) |
| C10—C15 | 1.384 (2) | N2—N3 | 1.3723 (18) |
| C10—C11 | 1.393 (2) | N2—H2N | 0.856 (15) |
| C11—C12 | 1.374 (3) | N4—O5 | 1.216 (2) |
| C11—H11 | 0.9300 | N4—O4 | 1.218 (2) |
| C12—C13 | 1.376 (2) | O1—S1 | 1.4273 (13) |
| C12—H12 | 0.9300 | O2—S1 | 1.4333 (13) |
| C6—C1—C2 | 119.83 (16) | C15—C14—H14 | 120.7 |
| C6—C1—S1 | 119.93 (13) | C14—C15—C10 | 121.03 (16) |
| C2—C1—S1 | 120.22 (13) | C14—C15—H15 | 119.5 |
| C3—C2—C1 | 119.72 (16) | C10—C15—H15 | 119.5 |
| C3—C2—H2 | 120.1 | C4—C16—H16A | 109.5 |
| C1—C2—H2 | 120.1 | C4—C16—H16B | 109.5 |
| C2—C3—C4 | 121.40 (16) | H16A—C16—H16B | 109.5 |
| C2—C3—H3 | 119.3 | C4—C16—H16C | 109.5 |
| C4—C3—H3 | 119.3 | H16A—C16—H16C | 109.5 |
| C3—C4—C5 | 117.63 (18) | H16B—C16—H16C | 109.5 |
| C3—C4—C16 | 121.21 (18) | O6—C17—N5 | 126.0 (2) |
| C5—C4—C16 | 121.16 (19) | O6—C17—H17 | 117.0 |
| C6—C5—C4 | 121.71 (18) | N5—C17—H17 | 117.0 |
| C6—C5—H5 | 119.1 | N5—C18—H18A | 109.5 |
| C4—C5—H5 | 119.1 | N5—C18—H18B | 109.5 |
| C1—C6—C5 | 119.63 (17) | H18A—C18—H18B | 109.5 |
| C1—C6—H6 | 120.2 | N5—C18—H18C | 109.5 |
| C5—C6—H6 | 120.2 | H18A—C18—H18C | 109.5 |
| N1—C7—C8 | 110.67 (13) | H18B—C18—H18C | 109.5 |
| N1—C7—H7A | 109.5 | N5—C19—H19A | 109.5 |
| C8—C7—H7A | 109.5 | N5—C19—H19B | 109.5 |
| N1—C7—H7B | 109.5 | H19A—C19—H19B | 109.5 |
| C8—C7—H7B | 109.5 | N5—C19—H19C | 109.5 |
| H7A—C7—H7B | 108.1 | H19A—C19—H19C | 109.5 |
| O3—C8—N2 | 121.73 (15) | H19B—C19—H19C | 109.5 |
| O3—C8—C7 | 123.18 (14) | C7—N1—S1 | 118.51 (11) |
| N2—C8—C7 | 115.08 (13) | C7—N1—H1N | 118.6 (14) |
| N3—C9—C10 | 120.54 (14) | S1—N1—H1N | 115.5 (14) |
| N3—C9—H9 | 119.7 | C8—N2—N3 | 119.45 (13) |
| C10—C9—H9 | 119.7 | C8—N2—H2N | 120.9 (13) |
| C15—C10—C11 | 118.91 (15) | N3—N2—H2N | 119.5 (13) |
| C15—C10—C9 | 119.51 (14) | C9—N3—N2 | 116.76 (13) |
| C11—C10—C9 | 121.57 (14) | O5—N4—O4 | 123.01 (17) |
| C12—C11—C10 | 120.49 (16) | O5—N4—C13 | 118.74 (16) |
| C12—C11—H11 | 119.8 | O4—N4—C13 | 118.25 (16) |
| C10—C11—H11 | 119.8 | C17—N5—C18 | 120.84 (18) |
| C11—C12—C13 | 119.13 (16) | C17—N5—C19 | 122.27 (18) |
| C11—C12—H12 | 120.4 | C18—N5—C19 | 116.84 (17) |
| C13—C12—H12 | 120.4 | O1—S1—O2 | 119.85 (8) |
| C14—C13—C12 | 121.87 (16) | O1—S1—N1 | 107.10 (8) |
| C14—C13—N4 | 118.89 (15) | O2—S1—N1 | 106.47 (8) |
| C12—C13—N4 | 119.22 (16) | O1—S1—C1 | 107.68 (8) |
| C13—C14—C15 | 118.52 (15) | O2—S1—C1 | 107.05 (8) |
| C13—C14—H14 | 120.7 | N1—S1—C1 | 108.25 (8) |
| C6—C1—C2—C3 | 2.5 (3) | C11—C10—C15—C14 | −0.8 (3) |
| S1—C1—C2—C3 | −179.22 (12) | C9—C10—C15—C14 | 178.07 (15) |
| C1—C2—C3—C4 | −0.4 (3) | C8—C7—N1—S1 | 164.48 (11) |
| C2—C3—C4—C5 | −2.1 (3) | O3—C8—N2—N3 | 178.85 (15) |
| C2—C3—C4—C16 | 178.09 (18) | C7—C8—N2—N3 | −1.6 (2) |
| C3—C4—C5—C6 | 2.5 (3) | C10—C9—N3—N2 | 178.34 (13) |
| C16—C4—C5—C6 | −177.7 (2) | C8—N2—N3—C9 | −178.98 (14) |
| C2—C1—C6—C5 | −2.1 (3) | C14—C13—N4—O5 | −8.6 (3) |
| S1—C1—C6—C5 | 179.61 (17) | C12—C13—N4—O5 | 173.06 (18) |
| C4—C5—C6—C1 | −0.4 (4) | C14—C13—N4—O4 | 170.45 (18) |
| N1—C7—C8—O3 | −3.0 (2) | C12—C13—N4—O4 | −7.9 (3) |
| N1—C7—C8—N2 | 177.44 (14) | O6—C17—N5—C18 | 1.0 (4) |
| N3—C9—C10—C15 | −177.27 (15) | O6—C17—N5—C19 | 178.4 (3) |
| N3—C9—C10—C11 | 1.6 (2) | C7—N1—S1—O1 | 165.96 (13) |
| C15—C10—C11—C12 | 1.7 (3) | C7—N1—S1—O2 | 36.61 (15) |
| C9—C10—C11—C12 | −177.14 (17) | C7—N1—S1—C1 | −78.19 (14) |
| C10—C11—C12—C13 | −0.7 (3) | C6—C1—S1—O1 | −145.65 (15) |
| C11—C12—C13—C14 | −1.3 (3) | C2—C1—S1—O1 | 36.03 (15) |
| C11—C12—C13—N4 | 177.02 (17) | C6—C1—S1—O2 | −15.55 (17) |
| C12—C13—C14—C15 | 2.2 (3) | C2—C1—S1—O2 | 166.13 (13) |
| N4—C13—C14—C15 | −176.14 (15) | C6—C1—S1—N1 | 98.87 (16) |
| C13—C14—C15—C10 | −1.1 (3) | C2—C1—S1—N1 | −79.45 (14) |
| H··· | ||||
| N1—H1 | 0.82 (2) | 2.24 (2) | 3.0142 (18) | 158 (2) |
| N2—H2 | 0.86 (2) | 2.02 (2) | 2.863 (2) | 168 (2) |
| C3—H3···O2ii | 0.93 | 2.59 | 3.442 (2) | 152 |
| C14—H14···O5iii | 0.93 | 2.56 | 3.484 (2) | 171 |
| C18—H18 | 0.96 | 2.56 | 3.446 (3) | 154 |
| C15—H15··· | 0.93 | 2.66 | 3.564 (2) | 164 |