Literature DB >> 29151629

Six new Phytophthora species from ITS Clade 7a including two sexually functional heterothallic hybrid species detected in natural ecosystems in Taiwan.

T Jung1,1, M H Jung1, B Scanu2, D Seress3, G M Kovács3,4, C Maia1, A Pérez-Sierra5, T-T Chang6, A Chandelier7, K Heungens8, K van Poucke8, P Abad-Campos9, M Léon9, S O Cacciola10, J Bakonyi3.   

Abstract

During a survey of Phytophthora diversity in natural ecosystems in Taiwan six new species were detected. Multigene phylogeny based on the nuclear ITS, ß-tubulin and HSP90 and the mitochondrial cox1 and NADH1 gene sequences demonstrated that they belong to ITS Clade 7a with P. europaea, P. uniformis, P. rubi and P. cambivora being their closest relatives. All six new species differed from each other and from related species by a unique combination of morphological characters, the breeding system, cardinal temperatures and growth rates. Four homothallic species, P. attenuata, P. flexuosa, P. formosa and P. intricata, were isolated from rhizosphere soil of healthy forests of Fagus hayatae, Quercus glandulifera, Q. tarokoensis, Castanopsis carlesii, Chamaecyparis formosensis and Araucaria cunninghamii. Two heterothallic species, P. xheterohybrida and P. xincrassata, were exclusively detected in three forest streams. All P. xincrassata isolates belonged to the A2 mating type while isolates of P. xheterohybrida represented both mating types with oospore abortion rates according to Mendelian ratios (4-33 %). Multiple heterozygous positions in their ITS, ß-tubulin and HSP90 gene sequences indicate that P. xheterohybrida, P. xincrassata and P. cambivora are interspecific hybrids. Consequently, P. cambivora is re-described as P. xcambivora without nomenclatural act. Pathogenicity trials on seedlings of Castanea sativa, Fagus sylvatica and Q. suber indicate that all six new species might pose a potential threat to European forests.

Entities:  

Keywords:  Phytophthora cambivora; biosecurity; breeding systems; evolution; flow cytometry; phylogeny; radiation

Year:  2016        PMID: 29151629      PMCID: PMC5645180          DOI: 10.3767/003158517X693615

Source DB:  PubMed          Journal:  Persoonia        ISSN: 0031-5850            Impact factor:   11.051


  48 in total

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3.  Phytophthora species in forest streams in Oregon and Alaska.

Authors:  Paul W Reeser; Wendy Sutton; Everett M Hansen; Philippe Remigi; Gerry C Adams
Journal:  Mycologia       Date:  2010-06-16       Impact factor: 2.696

4.  AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics.

Authors:  Johan A A Nylander; James C Wilgenbusch; Dan L Warren; David L Swofford
Journal:  Bioinformatics       Date:  2007-08-30       Impact factor: 6.937

Review 5.  Genome evolution in filamentous plant pathogens: why bigger can be better.

Authors:  Sylvain Raffaele; Sophien Kamoun
Journal:  Nat Rev Microbiol       Date:  2012-05-08       Impact factor: 60.633

6.  Phytophthora xserendipita sp. nov. and P. xpelgrandis, two destructive pathogens generated by natural hybridization.

Authors:  Willem A Man In 't Veld; Karin C H M Rosendahl; Chuanxue Hong
Journal:  Mycologia       Date:  2012-06-08       Impact factor: 2.696

7.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

8.  Multiple new phenotypic taxa from trees and riparian ecosystems in Phytophthora gonapodyides-P. megasperma ITS Clade 6, which tend to be high-temperature tolerant and either inbreeding or sterile.

Authors:  Clive M Brasier; David E L Cooke; James M Duncan; Everett M Hansen
Journal:  Mycol Res       Date:  2003-03

9.  Fungal Planet description sheets: 69-91.

Authors:  P W Crous; J Z Groenewald; R G Shivas; J Edwards; K A Seifert; A C Alfenas; R F Alfenas; T I Burgess; A J Carnegie; G E St J Hardy; N Hiscock; D Hüberli; T Jung; G Louis-Seize; G Okada; O L Pereira; M J C Stukely; W Wang; G P White; A J Young; A R McTaggart; I G Pascoe; I J Porter; W Quaedvlieg
Journal:  Persoonia       Date:  2011-05-31       Impact factor: 11.051

10.  Multiple new Phytophthora species from ITS Clade 6 associated with natural ecosystems in Australia: evolutionary and ecological implications.

Authors:  T Jung; M J C Stukely; G E St J Hardy; D White; T Paap; W A Dunstan; T I Burgess
Journal:  Persoonia       Date:  2011-01-20       Impact factor: 11.051

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  15 in total

Review 1.  Canker and decline diseases caused by soil- and airborne Phytophthora species in forests and woodlands.

Authors:  T Jung; A Pérez-Sierra; A Durán; M Horta Jung; Y Balci; B Scanu
Journal:  Persoonia       Date:  2018-04-30       Impact factor: 11.051

2.  Genera of phytopathogenic fungi: GOPHY 4.

Authors:  Q Chen; M Bakhshi; Y Balci; K D Broders; R Cheewangkoon; S F Chen; X L Fan; D Gramaje; F Halleen; M Horta Jung; N Jiang; T Jung; T Májek; S Marincowitz; I Milenković; L Mostert; C Nakashima; I Nurul Faziha; M Pan; M Raza; B Scanu; C F J Spies; L Suhaizan; H Suzuki; C M Tian; M Tomšovský; J R Úrbez-Torres; W Wang; B D Wingfield; M J Wingfield; Q Yang; X Yang; R Zare; P Zhao; J Z Groenewald; L Cai; P W Crous
Journal:  Stud Mycol       Date:  2022-06-02       Impact factor: 25.731

3.  Phytophthora: an ancient, historic, biologically and structurally cohesive and evolutionarily successful generic concept in need of preservation.

Authors:  Clive Brasier; Bruno Scanu; David Cooke; Thomas Jung
Journal:  IMA Fungus       Date:  2022-06-27       Impact factor: 8.044

4.  DNA Metabarcoding and Isolation by Baiting Complement Each Other in Revealing Phytophthora Diversity in Anthropized and Natural Ecosystems.

Authors:  Federico La Spada; Peter J A Cock; Eva Randall; Antonella Pane; David E L Cooke; Santa Olga Cacciola
Journal:  J Fungi (Basel)       Date:  2022-03-22

5.  Nothophytophthora gen. nov., a new sister genus of Phytophthora from natural and semi-natural ecosystems.

Authors:  T Jung; B Scanu; J Bakonyi; D Seress; G M Kovács; A Durán; E Sanfuentes von Stowasser; L Schena; S Mosca; P Q Thu; C M Nguyen; S Fajardo; M González; A Pérez-Sierra; H Rees; A Cravador; C Maia; M Horta Jung
Journal:  Persoonia       Date:  2017-08-07       Impact factor: 11.051

6.  Draft Genome Sequence for the Tree Pathogen Phytophthora plurivora.

Authors:  Ramesh R Vetukuri; Sucheta Tripathy; Mathu Malar C; Arijit Panda; Sandeep K Kushwaha; Aakash Chawade; Erik Andreasson; Laura J Grenville-Briggs; Stephen C Whisson
Journal:  Genome Biol Evol       Date:  2018-09-01       Impact factor: 3.416

7.  Unravelling hybridization in Phytophthora using phylogenomics and genome size estimation.

Authors:  Kris Van Poucke; Annelies Haegeman; Thomas Goedefroit; Fran Focquet; Leen Leus; Marília Horta Jung; Corina Nave; Miguel Angel Redondo; Claude Husson; Kaloyan Kostov; Aneta Lyubenova; Petya Christova; Anne Chandelier; Slavcho Slavov; Arthur de Cock; Peter Bonants; Sabine Werres; Jonàs Oliva Palau; Benoit Marçais; Thomas Jung; Jan Stenlid; Tom Ruttink; Kurt Heungens
Journal:  IMA Fungus       Date:  2021-07-01       Impact factor: 3.515

8.  An expanded phylogeny for the genus Phytophthora.

Authors:  Xiao Yang; Brett M Tyler; Chuanxue Hong
Journal:  IMA Fungus       Date:  2017-11-21       Impact factor: 3.515

9.  Multiple new cryptic pathogenic Phytophthora species from Fagaceae forests in Austria, Italy and Portugal.

Authors:  Thomas Jung; Marília Horta Jung; Santa Olga Cacciola; Thomas Cech; József Bakonyi; Diána Seress; Saveria Mosca; Leonardo Schena; Salvatore Seddaiu; Antonella Pane; Gaetano Magnano di San Lio; Cristiana Maia; Alfredo Cravador; Antonio Franceschini; Bruno Scanu
Journal:  IMA Fungus       Date:  2017-09-28       Impact factor: 3.515

10.  Differential Usefulness of Nine Commonly Used Genetic Markers for Identifying Phytophthora Species.

Authors:  Xiao Yang; Chuanxue Hong
Journal:  Front Microbiol       Date:  2018-10-03       Impact factor: 5.640

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