Literature DB >> 29149552

Predicting Nano-Bio Interactions by Integrating Nanoparticle Libraries and Quantitative Nanostructure Activity Relationship Modeling.

Wenyi Wang1, Alexander Sedykh1,2, Hainan Sun3, Linlin Zhao1, Daniel P Russo1, Hongyu Zhou4, Bing Yan3, Hao Zhu1,5.   

Abstract

The discovery of biocompatible or bioactive nanoparticles for medicinal applications is an expensive and time-consuming process that may be significantly facilitated by incorporating more rational approaches combining both experimental and computational methods. However, it is currently hindered by two limitations: (1) the lack of high-quality comprehensive data for computational modeling and (2) the lack of an effective modeling method for the complex nanomaterial structures. In this study, we tackled both issues by first synthesizing a large library of nanoparticles and obtained comprehensive data on their characterizations and bioactivities. Meanwhile, we virtually simulated each individual nanoparticle in this library by calculating their nanostructural characteristics and built models that correlate their nanostructure diversity to the corresponding biological activities. The resulting models were then used to predict and design nanoparticles with desired bioactivities. The experimental testing results of the designed nanoparticles were consistent with the model predictions. These findings demonstrate that rational design approaches combining high-quality nanoparticle libraries, big experimental data sets, and intelligent computational models can significantly reduce the efforts and costs of nanomaterial discovery.

Entities:  

Keywords:  QNAR modeling; cellular uptake; model predictions; nanomaterial design; nanoparticle library; virtual simulations

Mesh:

Substances:

Year:  2017        PMID: 29149552      PMCID: PMC5772766          DOI: 10.1021/acsnano.7b07093

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  38 in total

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6.  QSAR as a random event: modeling of nanoparticles uptake in PaCa2 cancer cells.

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8.  Classification NanoSAR development for cytotoxicity of metal oxide nanoparticles.

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9.  Tuning cell autophagy by diversifying carbon nanotube surface chemistry.

Authors:  Ling Wu; Yi Zhang; Chengke Zhang; Xuehui Cui; Shumei Zhai; Yin Liu; Changlong Li; Hao Zhu; Guangbo Qu; Guibin Jiang; Bing Yan
Journal:  ACS Nano       Date:  2014-02-25       Impact factor: 15.881

10.  Critical evaluation of human oral bioavailability for pharmaceutical drugs by using various cheminformatics approaches.

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  8 in total

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2.  Analysis of model PM2.5-induced inflammation and cytotoxicity by the combination of a virtual carbon nanoparticle library and computational modeling.

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3.  Deep exploration of random forest model boosts the interpretability of machine learning studies of complicated immune responses and lung burden of nanoparticles.

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Review 7.  Recent Advances in Immunosafety and Nanoinformatics of Two-Dimensional Materials Applied to Nano-imaging.

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8.  Quantitative Structure-Activity Relationship Models for Predicting Inflammatory Potential of Metal Oxide Nanoparticles.

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  8 in total

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