Literature DB >> 10089483

Protein Data Bank (PDB): database of three-dimensional structural information of biological macromolecules.

J L Sussman1, D Lin, J Jiang, N O Manning, J Prilusky, O Ritter, E E Abola.   

Abstract

The Protein Data Bank (PDB) at Brookhaven National Laboratory, is a database containing experimentally determined three-dimensional structures of proteins, nucleic acids and other biological macromolecules, with approximately 8000 entries. Data are easily submitted via PDB's WWW-based tool AutoDep, in either mmCIF or PDB format, and are most conveniently examined via PDB's WWW-based tool 3DB Browser.

Mesh:

Year:  1998        PMID: 10089483     DOI: 10.1107/s0907444998009378

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  164 in total

1.  Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed proteins.

Authors:  R Jansen; M Gerstein
Journal:  Nucleic Acids Res       Date:  2000-03-15       Impact factor: 16.971

2.  The structural basis of the catalytic mechanism and regulation of glucose-1-phosphate thymidylyltransferase (RmlA).

Authors:  W Blankenfeldt; M Asuncion; J S Lam; J H Naismith
Journal:  EMBO J       Date:  2000-12-15       Impact factor: 11.598

3.  Joint refinement as a tool for thorough comparison between NMR and X-ray data and structures of HU protein.

Authors:  M L Raves; J F Doreleijer; H Vis; C E Vorgias; K S Wilson; R Kaptei
Journal:  J Biomol NMR       Date:  2001-11       Impact factor: 2.835

4.  NCAD, a database integrating the intrinsic conformational preferences of non-coded amino acids.

Authors:  Guillem Revilla-López; Juan Torras; David Curcó; Jordi Casanovas; M Isabel Calaza; David Zanuy; Ana I Jiménez; Carlos Cativiela; Ruth Nussinov; Piotr Grodzinski; Carlos Alemán
Journal:  J Phys Chem B       Date:  2010-06-03       Impact factor: 2.991

5.  Conservation of structure and function among tyrosine recombinases: homology-based modeling of the lambda integrase core-binding domain.

Authors:  Brian M Swalla; Richard I Gumport; Jeffrey F Gardner
Journal:  Nucleic Acids Res       Date:  2003-02-01       Impact factor: 16.971

6.  PipeAlign: A new toolkit for protein family analysis.

Authors:  Frédéric Plewniak; Laurent Bianchetti; Yann Brelivet; Annaick Carles; Frédéric Chalmel; Odile Lecompte; Thiebaut Mochel; Luc Moulinier; Arnaud Muller; Jean Muller; Veronique Prigent; Raymond Ripp; Jean-Claude Thierry; Julie D Thompson; Nicolas Wicker; Olivier Poch
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

7.  Modeling shape and topology of low-resolution density maps of biological macromolecules.

Authors:  Pedro A De-Alarcón; Alberto Pascual-Montano; Amarnath Gupta; Jose M Carazo
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

8.  Differences in the structure and dynamics of the apo- and palmitate-ligated forms of Aedes aegypti sterol carrier protein 2 (AeSCP-2).

Authors:  Kiran K Singarapu; James T Radek; Marco Tonelli; John L Markley; Que Lan
Journal:  J Biol Chem       Date:  2010-03-31       Impact factor: 5.157

9.  Structural determinants of trypsin affinity and specificity for cationic inhibitors.

Authors:  F Polticelli; P Ascenzi; M Bolognesi; B Honig
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

10.  Identifying selective agonists targeting LXRβ from terpene compounds of alismatis rhizoma.

Authors:  Chuanjiong Lin; Jianzong Li; Chuanfang Wu; Jinku Bao
Journal:  J Mol Model       Date:  2021-02-22       Impact factor: 1.810

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