| Literature DB >> 29145421 |
Thibaud P Coroller1, Wenya Linda Bi2,3, Elizabeth Huynh1, Malak Abedalthagafi4,5, Ayal A Aizer1, Noah F Greenwald2, Chintan Parmar1, Vivek Narayan1, Winona W Wu2, Samuel Miranda de Moura2, Saksham Gupta2, Rameen Beroukhim3,6, Patrick Y Wen6, Ossama Al-Mefty2, Ian F Dunn2, Sandro Santagata4, Brian M Alexander1, Raymond Y Huang7, Hugo J W L Aerts1,7.
Abstract
OBJECTIVES: The clinical management of meningioma is guided by tumor grade and biological behavior. Currently, the assessment of tumor grade follows surgical resection and histopathologic review. Reliable techniques for pre-operative determination of tumor grade may enhance clinical decision-making.Entities:
Mesh:
Year: 2017 PMID: 29145421 PMCID: PMC5690632 DOI: 10.1371/journal.pone.0187908
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1A) Potential impact of radiographic features on meningioma patient management. Pre-operative radiographic assessment of grade may improve the ability to tailor precision medicine decision trees to individual patients. B) A combined model of semantic and radiomic radiographic features was used to predict meningioma grade and validated on an independent cohort of meningiomas.
Description of radiographic features and filters.
Individual descriptions are given for each group and parameter or feature.
| Type | Group | Feature / Parameter | Description |
|---|---|---|---|
| Radiographic features | Semantic | Intratumoral heterogeneity | Heterogeneity in hyperintensity of MRI signal throughout tumor |
| Multifocality | Non-contiguous growth of tumor | ||
| Midline shift | Shift of the brain past midline | ||
| Sinus invasion | Presence of venous sinus invasion | ||
| Necrosis / Hemorrhage | Presence of necrosis or hemorrhage | ||
| Mass effect | Shift in normal brain parenchyma due to tumor | ||
| Cystic component | Fluid filled cysts within the tumor | ||
| Bone invasion | Appearance of tumor invading the skull | ||
| Hyperostosis | Bony overgrowth adjacent to tumor | ||
| Spiculation | Irregularities in tumor shape and border | ||
| Radiomic | Median | Median voxel intensity value | |
| Mean | Mean voxel intensity value | ||
| Minimum | Minimal voxel intensity value | ||
| Skewness | Describes the shape of a probability distribution of the voxel intensity histogram | ||
| Spherical Disproportion (SD) | How different is the tumor is to a sphere with a similar volume | ||
| Cluster Prominence (CP) | Sensitive to flat zones (area of similar intensity) | ||
| Difference Entropy (DE) | Complexity of the pattern (high entropy for high number of unique patterns) | ||
| Inverse Difference Normalized (IDN) | Sensitive to homogeneity in the tumor | ||
| Run Length Non-uniformity (RLN) | Measure of heterogeneity | ||
| Short Run Low Gray-Level Emphasis (SRLGLE) | Measure of heterogeneity sensitive to low intensity pattern | ||
| High Intensity Large Area Emphasis (HILAE) | Sensitive to flat zones with high intensity voxels (e.g. areas of hemorrhage) | ||
| Low Intensity Large Area Emphasis (LILAE) | Sensitive to flat zones with low intensity voxels (e.g. areas of necrosis) | ||
| Low Intensity Small Area Emphasis (LISAE) | Sensitive to small flat zones with low intensity voxels | ||
| Filters | Wavelet | High (L), Low (L) | Wavelet filters decompose images by high (increase details) and low (smooth image, leaving general shape) for every spatial component (x,y,z) |
| LoG | Sigma (σ) | Laplacian of Gaussian is a filter that highlights textures using a variable size radius (σ). Depending on the radius (from 0.5mm to 5mm with 0.5 increment), it emphasizes image textures from fine to coarse. |
Fig 2Schematic of the radiomic feature selection process from the extraction to the final feature set.
Demographic information across the full, training, and validation datasets.
| Variable | Groups | Full (n = 175) | Training (n = 131) | Validation (n = 44) | |
|---|---|---|---|---|---|
| Age (years) | Median (range) | 57 (22–89) | 57 (22–89) | 57.5 (29–89) | |
| Gender | Male | 68 (38%) | 55 (42%) | 13 (30%) | |
| Female | 107 (62%) | 76 (58%) | 31 (70%) | ||
| WHO grade | Low (grade I) | 103 (59%) | 75 (57%) | 28 (63%) | |
| High (grade II-III) | 72 (41%) | 56 (43%) | 16 (37%) | ||
| Grade II | 66 | 52 | 14 | ||
| Grade III | 6 | 4 | 2 | ||
| Grade 1 meningioma with atypical features | No | 69 | 49 | 20 | |
| Yes | 34 | 26 | 8 | ||
| Radiation-induced | Yes | 13 (7%) | 11 (8.3%) | 2 (4.5%) | |
| No | 160 (93%) | 120 (91.7%) | 42 (95.5%) | ||
| Location | Midline Skull-base | 23 | 17 | 6 | |
| Lateral Skull-base | 53 | 41 | 12 | ||
| Midline Convexity | 39 | 31 | 8 | ||
| Lateral Convexity | 53 | 37 | 16 | ||
| Other | 5 | 3 | 5 |
* including 3 chordoid (grade II) and 1 rhaboid (grade III)
Fig 3A) Heatmap of the predictive power of (1) semantic and (2) radiomic features for meningioma grade (n = 175) or presence of histopathologic atypia in low grade meningiomas (n = 103). B) The association between semantic and radiomic features was investigated. Every semantic feature was predicted with each of the radiomic feature in a univariate manner that indicates their relationship. * indicates significance from random after multiple correction.
Univariate results for the semantic features.
Odds ratio, lower and higher 95% confidence interval and p-value (with multiple testing correction) are reported for each features.
| Odds Ratio | 95% Conf. Int. | p-value | ||
|---|---|---|---|---|
| Hyperostosis | 0.35 | 0.08 | 1.16 | 0.14 |
| Spiculation | 0.47 | 0.01 | 6.01 | 0.81 |
| Multifocality | 0.89 | 0.22 | 3.23 | 1.00 |
| Bone Invasion | 1.00 | 0.31 | 3.09 | 1.00 |
| Midline Shift | 1.39 | 0.71 | 2.70 | 0.49 |
| Mass Effect | 2.31 | 1.20 | 4.53 | 0.02 |
| Sinus Invasion | 2.91 | 1.33 | 6.59 | 0.02 |
| Necrosis / Hemorrhage | 6.60 | 1.69 | 37.88 | 0.01 |
| Cystic | 7.53 | 0.82 | 362.79 | 0.14 |
| Intratumoral Heterogeneity | 7.95 | 3.62 | 18.83 | <0.001 |
Univariate results for the radiomic features.
AUC, lower and higher 95% confidence interval and p-value (with multiple testing correction) are reported for each features.
| Features | AUC | 95% Conf. Int. | p-value | |
|---|---|---|---|---|
| HHL Skewness | 0.51 | 0.40 | 0.57 | 0.74 |
| HLH Median | 0.52 | 0.44 | 0.61 | 0.64 |
| LoG5 Low Intensity Small Area Emp. | 0.54 | 0.46 | 0.63 | 0.35 |
| LLH Short Run Low Gray Level Emp. | 0.55 | 0.37 | 0.54 | 0.35 |
| Difference Entropy | 0.56 | 0.35 | 0.52 | 0.21 |
| HHH Mean | 0.58 | 0.50 | 0.66 | 0.09 |
| LoG4 High Intensity Large Area Emp. | 0.59 | 0.50 | 0.67 | 0.08 |
| HLL Cluster Prominence | 0.60 | 0.51 | 0.68 | 0.05 |
| Spherical disproportion | 0.61 | 0.53 | 0.69 | 0.02 |
| LoG5 Inv. Diff. Normalized | 0.61 | 0.53 | 0.70 | 0.02 |
| HLH Low Intensity Large Area Emp. | 0.63 | 0.54 | 0.71 | 0.01 |
| HHL Mean | 0.63 | 0.55 | 0.71 | <0.001 |
| Run Length Non-uniformity | 0.65 | 0.56 | 0.73 | <0.001 |
| Minimum | 0.65 | 0.57 | 0.73 | <0.001 |
| HHH High Intensity Large Area Emp. | 0.69 | 0.61 | 0.77 | <0.001 |
Fig 4Area under the curve (AUC) from random forest models on the independent validation set (n = 44) for meningioma grade classification.
“*” indicates p-value <0.05, “***” indicates p-value <0.0001 from random prediction (Noether test).
Meningioma classification validation (n = 44) for each model is reported.
AUC, lower and higher 95% confidence interval and p-value (from random) are reported for each features.
| AUC | Sensitivity | Specificity | 95% Conf. Int. | p-values | ||
|---|---|---|---|---|---|---|
| Clinical | 0.651786 | 0.928571 | 0.375 | 0.468065 | 0.835507 | 0.105389 |
| Location | 0.669643 | 0.892857 | 0.3125 | 0.541902 | 0.907802 | 0.016002 |
| Semantic | 0.768973 | 0.75 | 0.625 | 0.648494 | 0.913278 | 3.21E-05 |
| Radiomic | 0.779018 | 0.928571 | 0.625 | 0.639093 | 0.918943 | 9.30E-05 |
| Radiographic (Loc. + Sem. + Rad.) | 0.860491 | 0.821429 | 0.625 | 0.762583 | 0.960012 | 7.31E-13 |
| Combined (All) | 0.83817 | 0.892857 | 0.375 | 0.733099 | 0.944753 | 3.45E-10 |