Literature DB >> 29128665

The application of ion-mobility mass spectrometry for structure/function investigation of protein complexes.

Gili Ben-Nissan1, Michal Sharon2.   

Abstract

Ion-mobility mass spectrometry (IM-MS) is an approach that can provide information on the stoichiometry, composition, protein contacts and topology of protein complexes. The power of this approach lies not only in its sensitivity and speed of analysis, but also in the fact that it is a technique that can capture the repertoire of conformational states adopted by protein assemblies. Here, we describe the array of available IM-MS based tools, and demonstrate their application to the structural characterization of various protein complexes, including challenging systems as amyloid aggregates and membrane proteins. We also discuss recent studies in which IM-MS was applied towards investigations of conformational transitions and stabilization effects induced by protein interactions.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 29128665      PMCID: PMC5796646          DOI: 10.1016/j.cbpa.2017.10.026

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  56 in total

1.  Ion mobility mass spectrometry of peptide, protein, and protein complex ions using a radio-frequency confining drift cell.

Authors:  Samuel J Allen; Kevin Giles; Tony Gilbert; Matthew F Bush
Journal:  Analyst       Date:  2016-01-07       Impact factor: 4.616

2.  Glycosaminoglycan Analysis by Cryogenic Messenger-Tagging IR Spectroscopy Combined with IMS-MS.

Authors:  Neelam Khanal; Chiara Masellis; Michael Z Kamrath; David E Clemmer; Thomas R Rizzo
Journal:  Anal Chem       Date:  2017-07-07       Impact factor: 6.986

3.  Intact Transition Epitope Mapping (ITEM).

Authors:  Yelena Yefremova; Kwabena F M Opuni; Bright D Danquah; Hans-Juergen Thiesen; Michael O Glocker
Journal:  J Am Soc Mass Spectrom       Date:  2017-06-14       Impact factor: 3.109

Review 4.  Native ion mobility-mass spectrometry and related methods in structural biology.

Authors:  A Konijnenberg; A Butterer; F Sobott
Journal:  Biochim Biophys Acta       Date:  2012-12-14

Review 5.  The power of ion mobility-mass spectrometry for structural characterization and the study of conformational dynamics.

Authors:  Francesco Lanucara; Stephen W Holman; Christopher J Gray; Claire E Eyers
Journal:  Nat Chem       Date:  2014-04       Impact factor: 24.427

Review 6.  Coupling Front-End Separations, Ion Mobility Spectrometry, and Mass Spectrometry For Enhanced Multidimensional Biological and Environmental Analyses.

Authors:  Xueyun Zheng; Roza Wojcik; Xing Zhang; Yehia M Ibrahim; Kristin E Burnum-Johnson; Daniel J Orton; Matthew E Monroe; Ronald J Moore; Richard D Smith; Erin S Baker
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2017-02-23       Impact factor: 10.745

7.  Oligomerization of the microtubule-associated protein tau is mediated by its N-terminal sequences: implications for normal and pathological tau action.

Authors:  H Eric Feinstein; Sarah J Benbow; Nichole E LaPointe; Nirav Patel; Srinivasan Ramachandran; Thanh D Do; Michelle R Gaylord; Noelle E Huskey; Nicolette Dressler; Megan Korff; Brady Quon; Kristi Lazar Cantrell; Michael T Bowers; Ratnesh Lal; Stuart C Feinstein
Journal:  J Neurochem       Date:  2016-04-20       Impact factor: 5.372

8.  Charge Mediated Compaction and Rearrangement of Gas-Phase Proteins: A Case Study Considering Two Proteins at Opposing Ends of the Structure-Disorder Continuum.

Authors:  Jacquelyn R Jhingree; Bruno Bellina; Kamila J Pacholarz; Perdita E Barran
Journal:  J Am Soc Mass Spectrom       Date:  2017-06-05       Impact factor: 3.109

9.  cAMP-dependent protein kinase (PKA) complexes probed by complementary differential scanning fluorimetry and ion mobility-mass spectrometry.

Authors:  Dominic P Byrne; Matthias Vonderach; Samantha Ferries; Philip J Brownridge; Claire E Eyers; Patrick A Eyers
Journal:  Biochem J       Date:  2016-07-21       Impact factor: 3.857

10.  Key features of an Hsp70 chaperone allosteric landscape revealed by ion-mobility native mass spectrometry and double electron-electron resonance.

Authors:  Alex L Lai; Eugenia M Clerico; Mandy E Blackburn; Nisha A Patel; Carol V Robinson; Peter P Borbat; Jack H Freed; Lila M Gierasch
Journal:  J Biol Chem       Date:  2017-04-20       Impact factor: 5.486

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  34 in total

Review 1.  New mass spectrometry technologies contributing towards comprehensive and high throughput omics analyses of single cells.

Authors:  Sneha P Couvillion; Ying Zhu; Gabe Nagy; Joshua N Adkins; Charles Ansong; Ryan S Renslow; Paul D Piehowski; Yehia M Ibrahim; Ryan T Kelly; Thomas O Metz
Journal:  Analyst       Date:  2019-01-28       Impact factor: 4.616

2.  Intact Transition Epitope Mapping - Targeted High-Energy Rupture of Extracted Epitopes (ITEM-THREE).

Authors:  Bright D Danquah; Claudia Röwer; KwabenaF M Opuni; Reham El-Kased; David Frommholz; Harald Illges; Cornelia Koy; Michael O Glocker
Journal:  Mol Cell Proteomics       Date:  2019-05-30       Impact factor: 5.911

3.  First-Principles Collision Cross Section Measurements of Large Proteins and Protein Complexes.

Authors:  Jacob W McCabe; Christopher S Mallis; Klaudia I Kocurek; Michael L Poltash; Mehdi Shirzadeh; Michael J Hebert; Liqi Fan; Thomas E Walker; Xueyun Zheng; Ting Jiang; Shiyu Dong; Cheng-Wei Lin; Arthur Laganowsky; David H Russell
Journal:  Anal Chem       Date:  2020-07-28       Impact factor: 6.986

4.  ITEM-THREE analysis of a monoclonal anti-malaria antibody reveals its assembled epitope on the pfMSP119 antigen.

Authors:  Kwabena F M Opuni; Cornelia Koy; Manuela Russ; Maren Reepmeyer; Bright D Danquah; Moritz Weresow; Astrid Alef; Peter Lorenz; Hans-Juergen Thiesen; Michael O Glocker
Journal:  J Biol Chem       Date:  2020-08-26       Impact factor: 5.157

5.  SLIM Ultrahigh Resolution Ion Mobility Spectrometry Separations of Isotopologues and Isotopomers Reveal Mobility Shifts due to Mass Distribution Changes.

Authors:  Roza Wojcik; Gabe Nagy; Isaac K Attah; Ian K Webb; Sandilya V B Garimella; Karl K Weitz; Adam Hollerbach; Matthew E Monroe; Marshall R Ligare; Felicity F Nielson; Randolph V Norheim; Ryan S Renslow; Thomas O Metz; Yehia M Ibrahim; Richard D Smith
Journal:  Anal Chem       Date:  2019-09-06       Impact factor: 6.986

6.  Integrated Use of Biochemical, Native Mass Spectrometry, Computational, and Genome-Editing Methods to Elucidate the Mechanism of a Salmonella deglycase.

Authors:  Anindita Sengupta; Jikang Wu; Justin T Seffernick; Anice Sabag-Daigle; Nicholas Thomsen; Tien-Hao Chen; Angela Di Capua; Charles E Bell; Brian M M Ahmer; Steffen Lindert; Vicki H Wysocki; Venkat Gopalan
Journal:  J Mol Biol       Date:  2019-09-04       Impact factor: 5.469

7.  Collision-Induced Unfolding Studies of Proteins and Protein Complexes using Drift Tube Ion Mobility-Mass Spectrometer.

Authors:  Xueyun Zheng; Ruwan T Kurulugama; Arthur Laganowsky; David H Russell
Journal:  Anal Chem       Date:  2020-05-08       Impact factor: 6.986

8.  Ion Activation Methods for Peptides and Proteins.

Authors:  Luis A Macias; Inês C Santos; Jennifer S Brodbelt
Journal:  Anal Chem       Date:  2019-11-12       Impact factor: 6.986

9.  Direct-MS analysis of antibody-antigen complexes.

Authors:  Shay Vimer; Gili Ben-Nissan; Michael Marty; Sarel J Fleishman; Michal Sharon
Journal:  Proteomics       Date:  2021-08-09       Impact factor: 3.984

Review 10.  Crosslinking mass spectrometry: A link between structural biology and systems biology.

Authors:  Xiaoting Tang; Helisa H Wippel; Juan D Chavez; James E Bruce
Journal:  Protein Sci       Date:  2021-03-06       Impact factor: 6.725

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