Literature DB >> 19917229

Undulation contributions to the area compressibility in lipid bilayer simulations.

Qaiser Waheed1, Olle Edholm.   

Abstract

It is here shown that there is a considerable system size-dependence in the area compressibility calculated from area fluctuations in lipid bilayers. This is caused by the contributions to the area fluctuations from undulations. This is also the case in experiments. At present, such a contribution, in most cases, is subtracted from the experimental values to obtain a true area compressibility. This should also be done with the simulation values. Here, this is done by extrapolating area compressibility versus system size, down to very small (zero) system size, where undulations no longer exist. The area compressibility moduli obtained from such simulations do not agree with experimental true area compressibility moduli as well as the uncorrected ones from contemporary or earlier simulations, but tend, instead, to be approximately 50% too large. As a byproduct, the bending modulus can be calculated from the slope of the compressibility modulus versus system-size. The values obtained in this way for the bending modulus are then in good agreement with experiment.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19917229      PMCID: PMC2776294          DOI: 10.1016/j.bpj.2009.08.048

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  20 in total

1.  Effective-area elasticity and tension of micromanipulated membranes.

Authors:  J B Fournier; A Ajdari; L Peliti
Journal:  Phys Rev Lett       Date:  2001-05-21       Impact factor: 9.161

2.  Measurement of membrane elasticity by micro-pipette aspiration.

Authors:  J R Henriksen; J H Ipsen
Journal:  Eur Phys J E Soft Matter       Date:  2004-06       Impact factor: 1.890

3.  Entropy-driven tension and bending elasticity in condensed-fluid membranes.

Authors: 
Journal:  Phys Rev Lett       Date:  1990-04-23       Impact factor: 9.161

4.  GROMACS: fast, flexible, and free.

Authors:  David Van Der Spoel; Erik Lindahl; Berk Hess; Gerrit Groenhof; Alan E Mark; Herman J C Berendsen
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

5.  Area compressibility and buckling of amphiphilic bilayers in molecular dynamics simulations.

Authors:  W K den Otter
Journal:  J Chem Phys       Date:  2005-12-01       Impact factor: 3.488

6.  Structure of fully hydrated fluid phase DMPC and DLPC lipid bilayers using X-ray scattering from oriented multilamellar arrays and from unilamellar vesicles.

Authors:  Norbert Kucerka; Yufeng Liu; Nanjun Chu; Horia I Petrache; Stephanie Tristram-Nagle; John F Nagle
Journal:  Biophys J       Date:  2005-01-21       Impact factor: 4.033

Review 7.  Structure of lipid bilayers.

Authors:  J F Nagle; S Tristram-Nagle
Journal:  Biochim Biophys Acta       Date:  2000-11-10

8.  Effect of chain length and unsaturation on elasticity of lipid bilayers.

Authors:  W Rawicz; K C Olbrich; T McIntosh; D Needham; E Evans
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

9.  Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations.

Authors:  E Lindahl; O Edholm
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

10.  The range and shielding of dipole-dipole interactions in phospholipid bilayers.

Authors:  Jakob Wohlert; Olle Edholm
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

View more
  21 in total

1.  Investigations on the melting and bending modulus of polymer grafted bilayers using dissipative particle dynamics.

Authors:  Foram M Thakkar; K G Ayappa
Journal:  Biomicrofluidics       Date:  2010-09-30       Impact factor: 2.800

2.  The Flip-Flop Diffusion Mechanism across Lipids in a Hybrid Bilayer Membrane.

Authors:  Christopher J Barile; Edmund C M Tse; Ying Li; John P Gewargis; Nicholas A Kirchschlager; Steven C Zimmerman; Andrew A Gewirth
Journal:  Biophys J       Date:  2016-06-07       Impact factor: 4.033

3.  Interpretation of fluctuation spectra in lipid bilayer simulations.

Authors:  Erik G Brandt; Anthony R Braun; Jonathan N Sachs; John F Nagle; Olle Edholm
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

4.  A New Computational Method for Membrane Compressibility: Bilayer Mechanical Thickness Revisited.

Authors:  Milka Doktorova; Michael V LeVine; George Khelashvili; Harel Weinstein
Journal:  Biophys J       Date:  2019-01-03       Impact factor: 4.033

5.  Geometrical membrane curvature as an allosteric regulator of membrane protein structure and function.

Authors:  Asger Tonnesen; Sune M Christensen; Vadym Tkach; Dimitrios Stamou
Journal:  Biophys J       Date:  2014-01-07       Impact factor: 4.033

6.  How cholesterol is distributed between monolayers in asymmetric lipid membranes.

Authors:  Semen O Yesylevskyy; Alexander P Demchenko
Journal:  Eur Biophys J       Date:  2012-10-09       Impact factor: 1.733

7.  Determination of electron density profiles and area from simulations of undulating membranes.

Authors:  Anthony R Braun; Erik G Brandt; Olle Edholm; John F Nagle; Jonathan N Sachs
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

8.  Conical lipids in flat bilayers induce packing defects similar to that induced by positive curvature.

Authors:  Lydie Vamparys; Romain Gautier; Stefano Vanni; W F Drew Bennett; D Peter Tieleman; Bruno Antonny; Catherine Etchebest; Patrick F J Fuchs
Journal:  Biophys J       Date:  2013-02-05       Impact factor: 4.033

9.  Excess area dependent scaling behavior of nano-sized membrane tethers.

Authors:  N Ramakrishnan; K K Sreeja; Arpita Roychoudhury; David M Eckmann; Portonovo S Ayyaswamy; Tobias Baumgart; Thomas Pucadyil; Shivprasad Patil; Valerie M Weaver; Ravi Radhakrishnan
Journal:  Phys Biol       Date:  2018-01-11       Impact factor: 2.583

10.  Assessing smectic liquid-crystal continuum models for elastic bilayer deformations.

Authors:  Kyu Ii Lee; Richard W Pastor; Olaf S Andersen; Wonpil Im
Journal:  Chem Phys Lipids       Date:  2013-01-21       Impact factor: 3.329

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.