Literature DB >> 29101190

A Haloalkane Dehalogenase from a Marine Microbial Consortium Possessing Exceptionally Broad Substrate Specificity.

Tomas Buryska1, Petra Babkova1, Ondrej Vavra1, Jiri Damborsky1, Zbynek Prokop2.   

Abstract

The haloalkane dehalogenase enzyme DmmA was identified by marine metagenomic screening. Determination of its crystal structure revealed an unusually large active site compared to those of previously characterized haloalkane dehalogenases. Here we present a biochemical characterization of this interesting enzyme with emphasis on its structure-function relationships. DmmA exhibited an exceptionally broad substrate specificity and degraded several halogenated environmental pollutants that are resistant to other members of this enzyme family. In addition to having this unique substrate specificity, the enzyme was highly tolerant to organic cosolvents such as dimethyl sulfoxide, methanol, and acetone. Its broad substrate specificity, high overexpression yield (200 mg of protein per liter of cultivation medium; 50% of total protein), good tolerance to organic cosolvents, and a broad pH range make DmmA an attractive biocatalyst for various biotechnological applications.IMPORTANCE We present a thorough biochemical characterization of the haloalkane dehalogenase DmmA from a marine metagenome. This enzyme with an unusually large active site shows remarkably broad substrate specificity, high overexpression, significant tolerance to organic cosolvents, and activity under a broad range of pH conditions. DmmA is an attractive catalyst for sustainable biotechnology applications, e.g., biocatalysis, biosensing, and biodegradation of halogenated pollutants. We also report its ability to convert multiple halogenated compounds to corresponding polyalcohols.
Copyright © 2018 American Society for Microbiology.

Entities:  

Keywords:  biotechnology; cosolvents; enzyme; haloalkane dehalogenase; marine; microbial; stability; substrate specificity

Mesh:

Substances:

Year:  2018        PMID: 29101190      PMCID: PMC5752856          DOI: 10.1128/AEM.01684-17

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  30 in total

1.  Structure and activity of DmmA, a marine haloalkane dehalogenase.

Authors:  Jennifer J Gehret; Liangcai Gu; Todd W Geders; William Clay Brown; Lena Gerwick; William H Gerwick; David H Sherman; Janet L Smith
Journal:  Protein Sci       Date:  2012-01-04       Impact factor: 6.725

2.  Degradation of beta-Hexachlorocyclohexane by Haloalkane Dehalogenase LinB from Sphingomonas paucimobilis UT26.

Authors:  Yuji Nagata; Zbynek Prokop; Yukari Sato; Petr Jerabek; Ashwani Kumar; Yoshiyuki Ohtsubo; Masataka Tsuda; Jirí Damborsky
Journal:  Appl Environ Microbiol       Date:  2005-04       Impact factor: 4.792

3.  Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate.

Authors:  Martina Pavlova; Martin Klvana; Zbynek Prokop; Radka Chaloupkova; Pavel Banas; Michal Otyepka; Rebecca C Wade; Masataka Tsuda; Yuji Nagata; Jiri Damborsky
Journal:  Nat Chem Biol       Date:  2009-08-23       Impact factor: 15.040

4.  Accurate secondary structure prediction and fold recognition for circular dichroism spectroscopy.

Authors:  András Micsonai; Frank Wien; Linda Kernya; Young-Ho Lee; Yuji Goto; Matthieu Réfrégiers; József Kardos
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-02       Impact factor: 11.205

Review 5.  Haloalkane dehalogenases: biotechnological applications.

Authors:  Tana Koudelakova; Sarka Bidmanova; Pavel Dvorak; Antonin Pavelka; Radka Chaloupkova; Zbynek Prokop; Jiri Damborsky
Journal:  Biotechnol J       Date:  2012-09-11       Impact factor: 4.677

6.  Purification and characterization of a bacterial dehalogenase with activity toward halogenated alkanes, alcohols and ethers.

Authors:  D B Janssen; J Gerritse; J Brackman; C Kalk; D Jager; B Witholt
Journal:  Eur J Biochem       Date:  1988-01-15

7.  Haloalkane degradation and assimilation by Rhodococcus rhodochrous NCIMB 13064.

Authors:  H Curragh; O Flynn; M J Larkin; T M Stafford; J T Hamilton; D B Harper
Journal:  Microbiology       Date:  1994-06       Impact factor: 2.777

8.  AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility.

Authors:  Garrett M Morris; Ruth Huey; William Lindstrom; Michel F Sanner; Richard K Belew; David S Goodsell; Arthur J Olson
Journal:  J Comput Chem       Date:  2009-12       Impact factor: 3.376

9.  Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.

Authors:  S T Cole; R Brosch; J Parkhill; T Garnier; C Churcher; D Harris; S V Gordon; K Eiglmeier; S Gas; C E Barry; F Tekaia; K Badcock; D Basham; D Brown; T Chillingworth; R Connor; R Davies; K Devlin; T Feltwell; S Gentles; N Hamlin; S Holroyd; T Hornsby; K Jagels; A Krogh; J McLean; S Moule; L Murphy; K Oliver; J Osborne; M A Quail; M A Rajandream; J Rogers; S Rutter; K Seeger; J Skelton; R Squares; S Squares; J E Sulston; K Taylor; S Whitehead; B G Barrell
Journal:  Nature       Date:  1998-06-11       Impact factor: 49.962

10.  CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures.

Authors:  Eva Chovancova; Antonin Pavelka; Petr Benes; Ondrej Strnad; Jan Brezovsky; Barbora Kozlikova; Artur Gora; Vilem Sustr; Martin Klvana; Petr Medek; Lada Biedermannova; Jiri Sochor; Jiri Damborsky
Journal:  PLoS Comput Biol       Date:  2012-10-18       Impact factor: 4.475

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  3 in total

1.  A Haloalkane Dehalogenase from Saccharomonospora viridis Strain DSM 43017, a Compost Bacterium with Unusual Catalytic Residues, Unique (S)-Enantiopreference, and High Thermostability.

Authors:  Klaudia Chmelova; Eva Sebestova; Veronika Liskova; Andy Beier; David Bednar; Zbynek Prokop; Radka Chaloupkova; Jiri Damborsky
Journal:  Appl Environ Microbiol       Date:  2020-08-18       Impact factor: 4.792

2.  An Ultrasensitive Fluorescence Assay for the Detection of Halides and Enzymatic Dehalogenation.

Authors:  Aşkın S Aslan-Üzel; Andy Beier; David Kovář; Clemens Cziegler; Santosh K Padhi; Eva D Schuiten; Mark Dörr; Dominique Böttcher; Frank Hollmann; Florian Rudroff; Marko D Mihovilovic; Tomáš Buryška; Jiří Damborský; Zbyněk Prokop; Christoffel P S Badenhorst; Uwe T Bornscheuer
Journal:  ChemCatChem       Date:  2020-01-31       Impact factor: 5.686

3.  Structural Analysis of the Ancestral Haloalkane Dehalogenase AncLinB-DmbA.

Authors:  Andrii Mazur; Pavel Grinkevich; Radka Chaloupkova; Petra Havlickova; Barbora Kascakova; Michal Kuty; Jiri Damborsky; Ivana Kuta Smatanova; Tatyana Prudnikova
Journal:  Int J Mol Sci       Date:  2021-11-05       Impact factor: 5.923

  3 in total

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