Literature DB >> 29094190

Evolution of Single-Domain Globins in Hydrothermal Vent Scale-Worms.

J Projecto-Garcia1,2,3, A-S Le Port4,5, T Govindji6, D Jollivet4,5, S W Schaeffer6, S Hourdez4,5.   

Abstract

Hypoxia at deep-sea hydrothermal vents represents one of the most basic challenges for metazoans, which then requires specific adaptations to acquire oxygen to meet their metabolic needs. Hydrothermal vent scale-worms (Polychaeta; Polynoidae) express large amounts of extracellular single- and multi-domain hemoglobins, in contrast with their shallow-water relatives that only possess intracellular globins in their nervous system (neuroglobins). We sequenced the gene encoding the single-domain (SD) globin from nine species of polynoids found in various vent and deep-sea reduced microhabitats (and associated constraints) to determine if the Polynoidae SD globins have been the targets of diversifying selection. Although extracellular, all the SD globins (and multi-domain ones) form a monophyletic clade that clusters within the intracellular globin group of other annelids, indicating that these hemoglobins have evolved from an intracellular myoglobin-like form. Positive selection could not be detected at the major ecological changes that the colonization of the deep-sea and hydrothermal vents represents. This suggests that no major structural modification was necessary to allow the globins to function under these conditions. The mere expression of these globins extracellularly may have been sufficiently advantageous for the polynoids living in hypoxic hydrothermal vents. Among hydrothermal vent species, positively selected amino acids were only detected in the phylogenetic lineage leading to the two mussel-commensal species (Branchipolynoe). In this lineage, the multiplicity of hemoglobins could have lessened the selective pressure on the SD hemoglobin, allowing the acquisition of novel functions by positive Darwinian selection. Conversely, the colonization of hotter environments (species of Branchinotogluma) does not seem to have required additional modifications.

Entities:  

Keywords:  Extracellular globin; Heme; Oxygen affinity; Polynoidae; Positive selection; Single-domain

Mesh:

Substances:

Year:  2017        PMID: 29094190     DOI: 10.1007/s00239-017-9815-7

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  44 in total

1.  MrBayes 3: Bayesian phylogenetic inference under mixed models.

Authors:  Fredrik Ronquist; John P Huelsenbeck
Journal:  Bioinformatics       Date:  2003-08-12       Impact factor: 6.937

2.  The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.

Authors:  Konstantin Arnold; Lorenza Bordoli; Jürgen Kopp; Torsten Schwede
Journal:  Bioinformatics       Date:  2005-11-13       Impact factor: 6.937

3.  Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites.

Authors:  Wendy S W Wong; Ziheng Yang; Nick Goldman; Rasmus Nielsen
Journal:  Genetics       Date:  2004-10       Impact factor: 4.562

4.  Quantifying the evolutionary divergence of protein structures: the role of function change and function conservation.

Authors:  Alberto Pascual-García; David Abia; Raúl Méndez; Gonzalo S Nido; Ugo Bastolla
Journal:  Proteins       Date:  2010-01

5.  Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene.

Authors:  R Nielsen; Z Yang
Journal:  Genetics       Date:  1998-03       Impact factor: 4.562

6.  An evolutionary tree for invertebrate globin sequences.

Authors:  M Goodman; J Pedwaydon; J Czelusniak; T Suzuki; T Gotoh; L Moens; F Shishikura; D Walz; S Vinogradov
Journal:  J Mol Evol       Date:  1988       Impact factor: 2.395

7.  Formation of two hydrogen bonds from the globin to the heme-linked oxygen molecule in Ascaris hemoglobin.

Authors:  I De Baere; M F Perutz; L Kiger; M C Marden; C Poyart
Journal:  Proc Natl Acad Sci U S A       Date:  1994-02-15       Impact factor: 11.205

8.  Evolution of the sulfide-binding function within the globin multigenic family of the deep-sea hydrothermal vent tubeworm Riftia pachyptila.

Authors:  Xavier Bailly; Didier Jollivet; Stephano Vanin; Jean Deutsch; Franck Zal; François Lallier; André Toulmond
Journal:  Mol Biol Evol       Date:  2002-09       Impact factor: 16.240

9.  Sulfide Binding by the Blood of the Hydrothermal Vent Tube Worm Riftia pachyptila.

Authors:  A J Arp; J J Childress
Journal:  Science       Date:  1983-01-21       Impact factor: 47.728

10.  Selective forces acting during multi-domain protein evolution: the case of multi-domain globins.

Authors:  Joana Projecto-Garcia; Didier Jollivet; Jean Mary; François H Lallier; Stephen W Schaeffer; Stéphane Hourdez
Journal:  Springerplus       Date:  2015-07-16
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.