Literature DB >> 29093610

Automating Biomedical Evidence Synthesis: RobotReviewer.

Iain J Marshall1, Joël Kuiper2, Edward Banner3, Byron C Wallace3.   

Abstract

We present RobotReviewer, an open-source web-based system that uses machine learning and NLP to semi-automate biomedical evidence synthesis, to aid the practice of Evidence-Based Medicine. RobotReviewer processes full-text journal articles (PDFs) describing randomized controlled trials (RCTs). It appraises the reliability of RCTs and extracts text describing key trial characteristics (e.g., descriptions of the population) using novel NLP methods. RobotReviewer then automatically generates a report synthesising this information. Our goal is for RobotReviewer to automatically extract and synthesise the full-range of structured data needed to inform evidence-based practice.

Entities:  

Year:  2017        PMID: 29093610      PMCID: PMC5662138          DOI: 10.18653/v1/P17-4002

Source DB:  PubMed          Journal:  Proc Conf Assoc Comput Linguist Meet        ISSN: 0736-587X


  12 in total

1.  Estimating time to conduct a meta-analysis from number of citations retrieved.

Authors:  I E Allen; I Olkin
Journal:  JAMA       Date:  1999-08-18       Impact factor: 56.272

2.  The Cochrane collaboration at 20.

Authors:  Richard Smith
Journal:  BMJ       Date:  2013-12-18

3.  Modernizing the systematic review process to inform comparative effectiveness: tools and methods.

Authors:  Byron C Wallace; Issa J Dahabreh; Christopher H Schmid; Joseph Lau; Thomas A Trikalinos
Journal:  J Comp Eff Res       Date:  2013-05       Impact factor: 1.744

4.  Rationale-Augmented Convolutional Neural Networks for Text Classification.

Authors:  Ye Zhang; Iain Marshall; Byron C Wallace
Journal:  Proc Conf Empir Methods Nat Lang Process       Date:  2016-11

5.  Extracting PICO Sentences from Clinical Trial Reports using Supervised Distant Supervision.

Authors:  Byron C Wallace; Joël Kuiper; Aakash Sharma; Mingxi Brian Zhu; Iain J Marshall
Journal:  J Mach Learn Res       Date:  2016       Impact factor: 3.654

6.  Changing Times in Cardiovascular Publications: A Commentary.

Authors:  Arthur J Moss; Frank I Marcus
Journal:  Am J Med       Date:  2016-08-01       Impact factor: 4.965

7.  Seventy-five trials and eleven systematic reviews a day: how will we ever keep up?

Authors:  Hilda Bastian; Paul Glasziou; Iain Chalmers
Journal:  PLoS Med       Date:  2010-09-21       Impact factor: 11.069

8.  ExaCT: automatic extraction of clinical trial characteristics from journal publications.

Authors:  Svetlana Kiritchenko; Berry de Bruijn; Simona Carini; Joel Martin; Ida Sim
Journal:  BMC Med Inform Decis Mak       Date:  2010-09-28       Impact factor: 2.796

9.  RobotReviewer: evaluation of a system for automatically assessing bias in clinical trials.

Authors:  Iain J Marshall; Joël Kuiper; Byron C Wallace
Journal:  J Am Med Inform Assoc       Date:  2015-06-22       Impact factor: 4.497

10.  Analysis of the time and workers needed to conduct systematic reviews of medical interventions using data from the PROSPERO registry.

Authors:  Rohit Borah; Andrew W Brown; Patrice L Capers; Kathryn A Kaiser
Journal:  BMJ Open       Date:  2017-02-27       Impact factor: 2.692

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  8 in total

1.  Machine learning to help researchers evaluate biases in clinical trials: a prospective, randomized user study.

Authors:  Frank Soboczenski; Thomas A Trikalinos; Joël Kuiper; Randolph G Bias; Byron C Wallace; Iain J Marshall
Journal:  BMC Med Inform Decis Mak       Date:  2019-05-08       Impact factor: 2.796

2.  Generating (Factual?) Narrative Summaries of RCTs: Experiments with Neural Multi-Document Summarization.

Authors:  Byron C Wallace; Sayantan Saha; Frank Soboczenski; Iain J Marshall
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2021-05-17

3.  Automating risk of bias assessment in systematic reviews: a real-time mixed methods comparison of human researchers to a machine learning system.

Authors:  Patricia Sofia Jacobsen Jardim; Christopher James Rose; Heather Melanie Ames; Jose Francisco Meneses Echavez; Stijn Van de Velde; Ashley Elizabeth Muller
Journal:  BMC Med Res Methodol       Date:  2022-06-08       Impact factor: 4.612

4.  Semi-Automated evidence synthesis in health psychology: current methods and future prospects.

Authors:  Iain J Marshall; Blair T Johnson; Zigeng Wang; Sanguthevar Rajasekaran; Byron C Wallace
Journal:  Health Psychol Rev       Date:  2020-01-29

5.  A Corpus with Multi-Level Annotations of Patients, Interventions and Outcomes to Support Language Processing for Medical Literature.

Authors:  Benjamin Nye; Junyi Jessy Li; Roma Patel; Yinfei Yang; Iain J Marshall; Ani Nenkova; Byron C Wallace
Journal:  Proc Conf Assoc Comput Linguist Meet       Date:  2018-07

6.  A neuro-symbolic method for understanding free-text medical evidence.

Authors:  Tian Kang; Ali Turfah; Jaehyun Kim; Adler Perotte; Chunhua Weng
Journal:  J Am Med Inform Assoc       Date:  2021-05-06       Impact factor: 4.497

7.  Toward systematic review automation: a practical guide to using machine learning tools in research synthesis.

Authors:  Iain J Marshall; Byron C Wallace
Journal:  Syst Rev       Date:  2019-07-11

8.  Pretraining to Recognize PICO Elements from Randomized Controlled Trial Literature.

Authors:  Tian Kang; Shirui Zou; Chunhua Weng
Journal:  Stud Health Technol Inform       Date:  2019-08-21
  8 in total

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