Literature DB >> 34457176

Generating (Factual?) Narrative Summaries of RCTs: Experiments with Neural Multi-Document Summarization.

Byron C Wallace1, Sayantan Saha1, Frank Soboczenski2, Iain J Marshall2.   

Abstract

We consider the problem of automatically generating a narrative biomedical evidence summary from multiple trial reports. We evaluate modern neural models for abstractive summarization of relevant article abstracts from systematic reviews previously conducted by members of the Cochrane collaboration, using the authors conclusions section of the review abstract as our target. We enlist medical professionals to evaluate generated summaries, and we find that summarization systems yield consistently fluent and relevant synopses, but these often contain factual inaccuracies. We propose new approaches that capitalize on domain-specific models to inform summarization, e.g., by explicitly demarcating snippets of inputs that convey key findings, and emphasizing the reports of large and high-quality trials. We find that these strategies modestly improve the factual accuracy of generated summaries. Finally, we propose a new method for automatically evaluating the factuality of generated narrative evidence syntheses using models that infer the directionality of reported findings. ©2021 AMIA - All rights reserved.

Entities:  

Year:  2021        PMID: 34457176      PMCID: PMC8378607     

Source DB:  PubMed          Journal:  AMIA Jt Summits Transl Sci Proc


  7 in total

1.  Evidence-based medicine.

Authors:  D L Sackett
Journal:  Semin Perinatol       Date:  1997-02       Impact factor: 3.300

Review 2.  Inhaled antibiotics for long-term therapy in cystic fibrosis.

Authors:  Gerard Ryan; Meenu Singh; Kerry Dwan
Journal:  Cochrane Database Syst Rev       Date:  2011-03-16

3.  Automating Biomedical Evidence Synthesis: RobotReviewer.

Authors:  Iain J Marshall; Joël Kuiper; Edward Banner; Byron C Wallace
Journal:  Proc Conf Assoc Comput Linguist Meet       Date:  2017-07

4.  AskHERMES: An online question answering system for complex clinical questions.

Authors:  YongGang Cao; Feifan Liu; Pippa Simpson; Lamont Antieau; Andrew Bennett; James J Cimino; John Ely; Hong Yu
Journal:  J Biomed Inform       Date:  2011-01-21       Impact factor: 6.317

5.  A Corpus with Multi-Level Annotations of Patients, Interventions and Outcomes to Support Language Processing for Medical Literature.

Authors:  Benjamin Nye; Junyi Jessy Li; Roma Patel; Yinfei Yang; Iain J Marshall; Ani Nenkova; Byron C Wallace
Journal:  Proc Conf Assoc Comput Linguist Meet       Date:  2018-07

6.  RobotReviewer: evaluation of a system for automatically assessing bias in clinical trials.

Authors:  Iain J Marshall; Joël Kuiper; Byron C Wallace
Journal:  J Am Med Inform Assoc       Date:  2015-06-22       Impact factor: 4.497

7.  Machine learning for identifying Randomized Controlled Trials: An evaluation and practitioner's guide.

Authors:  Iain J Marshall; Anna Noel-Storr; Joël Kuiper; James Thomas; Byron C Wallace
Journal:  Res Synth Methods       Date:  2018-02-07       Impact factor: 5.273

  7 in total
  1 in total

1.  What Would it Take to get Biomedical QA Systems into Practice?

Authors:  Gregory Kell; Iain J Marshall; Byron C Wallace; André Jaun
Journal:  Proc Conf Empir Methods Nat Lang Process       Date:  2021-11
  1 in total

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