Literature DB >> 29092956

"Personalized Cancer Therapy": A Publicly Available Precision Oncology Resource.

Katherine C Kurnit1, Ann M Bailey2, Jia Zeng2, Amber M Johnson2, Md Abu Shufean2, Lauren Brusco2, Beate C Litzenburger2, Nora S Sánchez2, Yekaterina B Khotskaya2, Vijaykumar Holla2, Amy Simpson2, Gordon B Mills2,3, John Mendelsohn2,4, Elmer Bernstam5, Kenna Shaw2, Funda Meric-Bernstam6,7,8.   

Abstract

High-throughput genomic and molecular profiling of tumors is emerging as an important clinical approach. Molecular profiling is increasingly being used to guide cancer patient care, especially in advanced and incurable cancers. However, navigating the scientific literature to make evidence-based clinical decisions based on molecular profiling results is overwhelming for many oncology clinicians and researchers. The Personalized Cancer Therapy website (www.personalizedcancertherapy.org) was created to provide an online resource for clinicians and researchers to facilitate navigation of available data. Specifically, this resource can be used to help identify potential therapy options for patients harboring oncogenic genomic alterations. Herein, we describe how content on www.personalizedcancertherapy.org is generated and maintained. We end with case scenarios to illustrate the clinical utility of the website. The goal of this publicly available resource is to provide easily accessible information to a broad oncology audience, as this may help ease the information retrieval burden facing participants in the precision oncology field. Cancer Res; 77(21); e123-6. ©2017 AACR. ©2017 American Association for Cancer Research.

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Year:  2017        PMID: 29092956      PMCID: PMC5774617          DOI: 10.1158/0008-5472.CAN-17-0341

Source DB:  PubMed          Journal:  Cancer Res        ISSN: 0008-5472            Impact factor:   12.701


  14 in total

1.  dbSNP: the NCBI database of genetic variation.

Authors:  S T Sherry; M H Ward; M Kholodov; J Baker; L Phan; E M Smigielski; K Sirotkin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  The right drugs at the right time for the right patient: the MD Anderson precision oncology decision support platform.

Authors:  Amber Johnson; Jia Zeng; Ann M Bailey; Vijaykumar Holla; Beate Litzenburger; Humberto Lara-Guerra; Gordon B Mills; John Mendelsohn; Kenna R Shaw; Funda Meric-Bernstam
Journal:  Drug Discov Today       Date:  2015-07-03       Impact factor: 7.851

Review 3.  A decision support framework for genomically informed investigational cancer therapy.

Authors:  Funda Meric-Bernstam; Amber Johnson; Vijaykumar Holla; Ann Marie Bailey; Lauren Brusco; Ken Chen; Mark Routbort; Keyur P Patel; Jia Zeng; Scott Kopetz; Michael A Davies; Sarina A Piha-Paul; David S Hong; Agda Karina Eterovic; Apostolia M Tsimberidou; Russell Broaddus; Elmer V Bernstam; Kenna R Shaw; John Mendelsohn; Gordon B Mills
Journal:  J Natl Cancer Inst       Date:  2015-04-11       Impact factor: 13.506

4.  Feasibility of Large-Scale Genomic Testing to Facilitate Enrollment Onto Genomically Matched Clinical Trials.

Authors:  Funda Meric-Bernstam; Lauren Brusco; Kenna Shaw; Chacha Horombe; Scott Kopetz; Michael A Davies; Mark Routbort; Sarina A Piha-Paul; Filip Janku; Naoto Ueno; David Hong; John De Groot; Vinod Ravi; Yisheng Li; Raja Luthra; Keyur Patel; Russell Broaddus; John Mendelsohn; Gordon B Mills
Journal:  J Clin Oncol       Date:  2015-05-26       Impact factor: 44.544

Review 5.  Implementation of biomarker-driven cancer therapy: existing tools and remaining gaps.

Authors:  Ann M Bailey; Yong Mao; Jia Zeng; Vijaykumar Holla; Amber Johnson; Lauren Brusco; Ken Chen; John Mendelsohn; Mark J Routbort; Gordon B Mills; Funda Meric-Bernstam
Journal:  Discov Med       Date:  2014-02       Impact factor: 2.970

6.  COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer.

Authors:  Simon A Forbes; Nidhi Bindal; Sally Bamford; Charlotte Cole; Chai Yin Kok; David Beare; Mingming Jia; Rebecca Shepherd; Kenric Leung; Andrew Menzies; Jon W Teague; Peter J Campbell; Michael R Stratton; P Andrew Futreal
Journal:  Nucleic Acids Res       Date:  2010-10-15       Impact factor: 16.971

7.  Entrez Gene: gene-centered information at NCBI.

Authors:  Donna Maglott; Jim Ostell; Kim D Pruitt; Tatiana Tatusova
Journal:  Nucleic Acids Res       Date:  2010-11-28       Impact factor: 16.971

8.  Adapting a natural language processing tool to facilitate clinical trial curation for personalized cancer therapy.

Authors:  Jia Zeng; Yonghui Wu; Ann Bailey; Amber Johnson; Vijaykumar Holla; Elmer V Bernstam; Hua Xu; Funda Meric-Bernstam
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2014-04-07

9.  UniProt: the universal protein knowledgebase.

Authors: 
Journal:  Nucleic Acids Res       Date:  2016-11-29       Impact factor: 16.971

10.  ClinVar: public archive of interpretations of clinically relevant variants.

Authors:  Melissa J Landrum; Jennifer M Lee; Mark Benson; Garth Brown; Chen Chao; Shanmuga Chitipiralla; Baoshan Gu; Jennifer Hart; Douglas Hoffman; Jeffrey Hoover; Wonhee Jang; Kenneth Katz; Michael Ovetsky; George Riley; Amanjeev Sethi; Ray Tully; Ricardo Villamarin-Salomon; Wendy Rubinstein; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

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  9 in total

1.  Systematic Functional Annotation of Somatic Mutations in Cancer.

Authors:  Patrick Kwok-Shing Ng; Jun Li; Kang Jin Jeong; Shan Shao; Hu Chen; Yiu Huen Tsang; Sohini Sengupta; Zixing Wang; Venkata Hemanjani Bhavana; Richard Tran; Stephanie Soewito; Darlan Conterno Minussi; Daniela Moreno; Kathleen Kong; Turgut Dogruluk; Hengyu Lu; Jianjiong Gao; Collin Tokheim; Daniel Cui Zhou; Amber M Johnson; Jia Zeng; Carman Ka Man Ip; Zhenlin Ju; Matthew Wester; Shuangxing Yu; Yongsheng Li; Christopher P Vellano; Nikolaus Schultz; Rachel Karchin; Li Ding; Yiling Lu; Lydia Wai Ting Cheung; Ken Chen; Kenna R Shaw; Funda Meric-Bernstam; Kenneth L Scott; Song Yi; Nidhi Sahni; Han Liang; Gordon B Mills
Journal:  Cancer Cell       Date:  2018-03-12       Impact factor: 31.743

2.  Artificial intelligence in clinical research of cancers.

Authors:  Dan Shao; Yinfei Dai; Nianfeng Li; Xuqing Cao; Wei Zhao; Li Cheng; Zhuqing Rong; Lan Huang; Yan Wang; Jing Zhao
Journal:  Brief Bioinform       Date:  2022-01-17       Impact factor: 11.622

3.  Genomic Landscape of Cell-Free DNA in Patients with Colorectal Cancer.

Authors:  John H Strickler; Jonathan M Loree; Leanne G Ahronian; Aparna R Parikh; Donna Niedzwiecki; Allan Andresson Lima Pereira; Matthew McKinney; W Michael Korn; Chloe E Atreya; Kimberly C Banks; Rebecca J Nagy; Funda Meric-Bernstam; Richard B Lanman; AmirAli Talasaz; Igor F Tsigelny; Ryan B Corcoran; Scott Kopetz
Journal:  Cancer Discov       Date:  2017-12-01       Impact factor: 39.397

4.  Multidisciplinary molecular tumour board: a tool to improve clinical practice and selection accrual for clinical trials in patients with cancer.

Authors:  Christian Rolfo; Paolo Manca; Roberto Salgado; Peter Van Dam; Amelie Dendooven; Jose Ferri Gandia; Annemie Rutten; Willem Lybaert; Joanna Vermeij; Thomas Gevaert; Christine Weyn; Anneke Lefebure; Sofie Metsu; Steven Van Laere; Marc Peeters; Patrick Pauwels; Andreia Machado Coelho
Journal:  ESMO Open       Date:  2018-07-23

Review 5.  Collaborative, Multidisciplinary Evaluation of Cancer Variants Through Virtual Molecular Tumor Boards Informs Local Clinical Practices.

Authors:  Shruti Rao; Beth Pitel; Alex H Wagner; Simina M Boca; Matthew McCoy; Ian King; Samir Gupta; Ben Ho Park; Jeremy L Warner; James Chen; Peter K Rogan; Debyani Chakravarty; Malachi Griffith; Obi L Griffith; Subha Madhavan
Journal:  JCO Clin Cancer Inform       Date:  2020-07

6.  Prediction of response to anti-cancer drugs becomes robust via network integration of molecular data.

Authors:  Marcela Franco; Ashwini Jeggari; Sylvain Peuget; Franziska Böttger; Galina Selivanova; Andrey Alexeyenko
Journal:  Sci Rep       Date:  2019-02-20       Impact factor: 4.379

Review 7.  Personalized cancer therapy-leveraging a knowledge base for clinical decision-making.

Authors:  Ecaterina Ileana Dumbrava; Funda Meric-Bernstam
Journal:  Cold Spring Harb Mol Case Stud       Date:  2018-04-02

8.  IMPACT web portal: oncology database integrating molecular profiles with actionable therapeutics.

Authors:  Jennifer D Hintzsche; Minjae Yoo; Jihye Kim; Carol M Amato; William A Robinson; Aik Choon Tan
Journal:  BMC Med Genomics       Date:  2018-04-20       Impact factor: 3.063

Review 9.  A Review of Precision Oncology Knowledgebases for Determining the Clinical Actionability of Genetic Variants.

Authors:  Xuanyi Li; Jeremy L Warner
Journal:  Front Cell Dev Biol       Date:  2020-02-11
  9 in total

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