Literature DB >> 29072833

Radical Breakthroughs in Natural Product and Cofactor Biosynthesis.

Kenichi Yokoyama1.   

Abstract

The radical SAM (S-adenosyl-l-methionine) superfamily is one of the largest group of enzymes with >113000 annotated sequences [Landgraf, B. J., et al. (2016) Annu. Rev. Biochem. 85, 485-514]. Members of this superfamily catalyze the reductive cleavage of SAM using an oxygen sensitive 4Fe-4S cluster to transiently generate 5'-deoxyadenosyl radical that is subsequently used to initiate diverse free radical-mediated reactions. Because of the unique reactivity of free radicals, radical SAM enzymes frequently catalyze chemically challenging reactions critical for the biosynthesis of unique structures of cofactors and natural products. In this Perspective, I will discuss the impact of characterizing novel functions in radical SAM enzymes on our understanding of biosynthetic pathways and use two recent examples from my own group with a particular emphasis on two radical SAM enzymes that are responsible for carbon skeleton formation during the biosynthesis of a cofactor and natural products.

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Year:  2017        PMID: 29072833      PMCID: PMC5790616          DOI: 10.1021/acs.biochem.7b00878

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  38 in total

1.  3'-Enolpyruvyl-UMP, a novel and unexpected metabolite in nikkomycin biosynthesis.

Authors:  Cristian Ginj; Heinz Rüegger; Nikolaus Amrhein; Peter Macheroux
Journal:  Chembiochem       Date:  2005-11       Impact factor: 3.164

2.  Identification of a cyclic nucleotide as a cryptic intermediate in molybdenum cofactor biosynthesis.

Authors:  Bradley M Hover; Anna Loksztejn; Anthony A Ribeiro; Kenichi Yokoyama
Journal:  J Am Chem Soc       Date:  2013-04-29       Impact factor: 15.419

3.  Insights into molybdenum cofactor deficiency provided by the crystal structure of the molybdenum cofactor biosynthesis protein MoaC.

Authors:  M M Wuebbens; M T Liu; K Rajagopalan; H Schindelin
Journal:  Structure       Date:  2000-07-15       Impact factor: 5.006

4.  Radical SAM catalysis via an organometallic intermediate with an Fe-[5'-C]-deoxyadenosyl bond.

Authors:  Masaki Horitani; Krista Shisler; William E Broderick; Rachel U Hutcheson; Kaitlin S Duschene; Amy R Marts; Brian M Hoffman; Joan B Broderick
Journal:  Science       Date:  2016-05-12       Impact factor: 47.728

5.  Structure and stability of the molybdenum cofactor intermediate cyclic pyranopterin monophosphate.

Authors:  Jose Angel Santamaria-Araujo; Victor Wray; Guenter Schwarz
Journal:  J Biol Inorg Chem       Date:  2011-08-30       Impact factor: 3.358

6.  C-Terminal glycine-gated radical initiation by GTP 3',8-cyclase in the molybdenum cofactor biosynthesis.

Authors:  Bradley M Hover; Kenichi Yokoyama
Journal:  J Am Chem Soc       Date:  2015-03-02       Impact factor: 15.419

7.  Functionality of alternative splice forms of the first enzymes involved in human molybdenum cofactor biosynthesis.

Authors:  Petra Hänzelmann; Gunter Schwarz; Ralf R Mendel
Journal:  J Biol Chem       Date:  2002-03-12       Impact factor: 5.157

8.  The History of the Discovery of the Molybdenum Cofactor and Novel Aspects of its Biosynthesis in Bacteria.

Authors:  Silke Leimkühler; Margot M Wuebbens; K V Rajagopalan
Journal:  Coord Chem Rev       Date:  2011-05-01       Impact factor: 22.315

9.  Binding energy in the one-electron reductive cleavage of S-adenosylmethionine in lysine 2,3-aminomutase, a radical SAM enzyme.

Authors:  Susan C Wang; Perry A Frey
Journal:  Biochemistry       Date:  2007-10-18       Impact factor: 3.162

10.  Carbon extension in peptidylnucleoside biosynthesis by radical SAM enzymes.

Authors:  Edward A Lilla; Kenichi Yokoyama
Journal:  Nat Chem Biol       Date:  2016-09-19       Impact factor: 15.040

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  2 in total

Review 1.  Formation and Cleavage of C-C Bonds by Enzymatic Oxidation-Reduction Reactions.

Authors:  F Peter Guengerich; Francis K Yoshimoto
Journal:  Chem Rev       Date:  2018-06-22       Impact factor: 60.622

Review 2.  Following the electrons: peculiarities in the catalytic cycles of radical SAM enzymes.

Authors:  Mark W Ruszczycky; Aoshu Zhong; Hung-Wen Liu
Journal:  Nat Prod Rep       Date:  2018-07-18       Impact factor: 13.423

  2 in total

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