Literature DB >> 29485151

Following the electrons: peculiarities in the catalytic cycles of radical SAM enzymes.

Mark W Ruszczycky1, Aoshu Zhong, Hung-Wen Liu.   

Abstract

Radical SAM enzymes use S-adenosyl-l-methionine as an oxidant to initiate radical-mediated transformations that would otherwise not be possible with Lewis acid/base chemistry alone. These reactions are either redox neutral or oxidative leading to certain expectations regarding the role of SAM as either a reusable cofactor or the ultimate electron acceptor during each turnover. However, these expectations are frequently not realized resulting in fundamental questions regarding the redox handling and movement of electrons associated with these biological catalysts. Herein we provide a focused perspective on several of these questions and associated hypotheses with an emphasis on recently discovered radical SAM enzymes.

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Year:  2018        PMID: 29485151      PMCID: PMC6051909          DOI: 10.1039/c7np00058h

Source DB:  PubMed          Journal:  Nat Prod Rep        ISSN: 0265-0568            Impact factor:   13.423


  74 in total

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Authors:  Mark W Ruszczycky; Hung-Wen Liu
Journal:  Isr J Chem       Date:  2015-02-20       Impact factor: 3.333

2.  Structures of the peptide-modifying radical SAM enzyme SuiB elucidate the basis of substrate recognition.

Authors:  Katherine M Davis; Kelsey R Schramma; William A Hansen; John P Bacik; Sagar D Khare; Mohammad R Seyedsayamdost; Nozomi Ando
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-11       Impact factor: 11.205

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Authors:  Xinjian Ji; Yongzhen Li; Wei Ding; Qi Zhang
Journal:  Angew Chem Int Ed Engl       Date:  2015-07-03       Impact factor: 15.336

Review 4.  S-adenosylmethionine as an oxidant: the radical SAM superfamily.

Authors:  Susan C Wang; Perry A Frey
Journal:  Trends Biochem Sci       Date:  2007-02-08       Impact factor: 13.807

5.  GenK-catalyzed C-6' methylation in the biosynthesis of gentamicin: isolation and characterization of a cobalamin-dependent radical SAM enzyme.

Authors:  Hak Joong Kim; Reid M McCarty; Yasushi Ogasawara; Yung-nan Liu; Steven O Mansoorabadi; Jake LeVieux; Hung-wen Liu
Journal:  J Am Chem Soc       Date:  2013-05-21       Impact factor: 15.419

6.  Characterization of a C3 Deoxygenation Pathway Reveals a Key Branch Point in Aminoglycoside Biosynthesis.

Authors:  Meinan Lv; Xinjian Ji; Junfeng Zhao; Yongzhen Li; Chen Zhang; Li Su; Wei Ding; Zixin Deng; Yi Yu; Qi Zhang
Journal:  J Am Chem Soc       Date:  2016-05-17       Impact factor: 15.419

7.  Menaquinone biosynthesis: formation of aminofutalosine requires a unique radical SAM enzyme.

Authors:  Nilkamal Mahanta; Dmytro Fedoseyenko; Tohru Dairi; Tadhg P Begley
Journal:  J Am Chem Soc       Date:  2013-10-07       Impact factor: 15.419

8.  In vitro characterization of AtsB, a radical SAM formylglycine-generating enzyme that contains three [4Fe-4S] clusters.

Authors:  Tyler L Grove; Kyung-Hoon Lee; Jennifer St Clair; Carsten Krebs; Squire J Booker
Journal:  Biochemistry       Date:  2008-06-18       Impact factor: 3.162

9.  Structure and biosynthesis of a macrocyclic peptide containing an unprecedented lysine-to-tryptophan crosslink.

Authors:  Kelsey R Schramma; Leah B Bushin; Mohammad R Seyedsayamdost
Journal:  Nat Chem       Date:  2015-04-20       Impact factor: 24.427

10.  7-Carboxy-7-deazaguanine Synthase: A Radical S-Adenosyl-l-methionine Enzyme with Polar Tendencies.

Authors:  Nathan A Bruender; Tsehai A J Grell; Daniel P Dowling; Reid M McCarty; Catherine L Drennan; Vahe Bandarian
Journal:  J Am Chem Soc       Date:  2017-01-25       Impact factor: 15.419

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  9 in total

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Authors:  Richard Ayikpoe; Thacien Ngendahimana; Michelle Langton; Sheila Bonitatibus; Lindsey M Walker; Sandra S Eaton; Gareth R Eaton; Maria-Eirini Pandelia; Sean J Elliott; John A Latham
Journal:  Biochemistry       Date:  2019-01-25       Impact factor: 3.162

Review 2.  Enzymatic Cascade Reactions in Biosynthesis.

Authors:  Christopher T Walsh; Bradley S Moore
Journal:  Angew Chem Int Ed Engl       Date:  2019-02-20       Impact factor: 15.336

3.  Biosynthesis of Oxetanocin-A Includes a B12-Dependent Radical SAM Enzyme That Can Catalyze both Oxidative Ring Contraction and the Demethylation of SAM.

Authors:  Aoshu Zhong; Yu-Hsuan Lee; Yung-Nan Liu; Hung-Wen Liu
Journal:  Biochemistry       Date:  2021-02-09       Impact factor: 3.162

4.  Analysis of RNA Methylation by Phylogenetically Diverse Cfr Radical S-Adenosylmethionine Enzymes Reveals an Iron-Binding Accessory Domain in a Clostridial Enzyme.

Authors:  James D Gumkowski; Ryan J Martinie; Patrick S Corrigan; Juan Pan; Matthew R Bauerle; Mohamed Almarei; Squire J Booker; Alexey Silakov; Carsten Krebs; Amie K Boal
Journal:  Biochemistry       Date:  2019-07-12       Impact factor: 3.162

5.  β-NAD as a building block in natural product biosynthesis.

Authors:  Lena Barra; Takayoshi Awakawa; Kohei Shirai; Zhijuan Hu; Ghader Bashiri; Ikuro Abe
Journal:  Nature       Date:  2021-12-08       Impact factor: 49.962

6.  HygY Is a Twitch Radical SAM Epimerase with Latent Dehydrogenase Activity Revealed upon Mutation of a Single Cysteine Residue.

Authors:  Ronald A Besandre; Zhang Chen; Ian Davis; Jiawei Zhang; Mark Walter Ruszczycky; Aimin Liu; Hung-Wen Liu
Journal:  J Am Chem Soc       Date:  2021-09-07       Impact factor: 15.419

7.  Dioxane Bridge Formation during the Biosynthesis of Spectinomycin Involves a Twitch Radical S-Adenosyl Methionine Dehydrogenase That May Have Evolved from an Epimerase.

Authors:  Jiawei Zhang; Xueli Hou; Zhang Chen; Yeonjin Ko; Mark W Ruszczycky; Yutian Chen; Jiahai Zhou; Hung-Wen Liu
Journal:  J Am Chem Soc       Date:  2022-05-27       Impact factor: 16.383

8.  Identification of the Enzymes Mediating the Maturation of the Seryl-tRNA Synthetase Inhibitor SB-217452 during the Biosynthesis of Albomycins.

Authors:  Richiro Ushimaru; Zhang Chen; Houyuan Zhao; Po-Hsun Fan; Hung-Wen Liu
Journal:  Angew Chem Int Ed Engl       Date:  2020-01-29       Impact factor: 15.336

Review 9.  Activation modes in biocatalytic radical cyclization reactions.

Authors:  Yuxuan Ye; Haigen Fu; Todd K Hyster
Journal:  J Ind Microbiol Biotechnol       Date:  2021-06-04       Impact factor: 4.258

  9 in total

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