Literature DB >> 29072301

Epitranscriptomics: Shrinking maps of RNA modifications.

Anya V Grozhik1, Samie R Jaffrey1.   

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Year:  2017        PMID： 29072301     DOI： 10.1038/nature24156

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


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  13 in total

1.  Transcriptome-wide mapping reveals reversible and dynamic N(1)-methyladenosine methylome.

Authors:  Xiaoyu Li; Xushen Xiong; Kun Wang; Lixia Wang; Xiaoting Shu; Shiqing Ma; Chengqi Yi
Journal:  Nat Chem Biol       Date:  2016-02-10       Impact factor: 15.040

2.  The presence of modified nucleotides is required for cloverleaf folding of a human mitochondrial tRNA.

Authors:  M Helm; H Brulé; F Degoul; C Cepanec; J P Leroux; R Giegé; C Florentz
Journal:  Nucleic Acids Res       Date:  1998-04-01       Impact factor: 16.971

3.  An active role for the ribosome in determining the fate of oxidized mRNA.

Authors:  Carrie L Simms; Benjamin H Hudson; John W Mosior; Ali S Rangwala; Hani S Zaher
Journal:  Cell Rep       Date:  2014-11-13       Impact factor: 9.423

4.  Nm-seq maps 2'-O-methylation sites in human mRNA with base precision.

Authors:  Qing Dai; Sharon Moshitch-Moshkovitz; Dali Han; Nitzan Kol; Ninette Amariglio; Gideon Rechavi; Dan Dominissini; Chuan He
Journal:  Nat Methods       Date:  2017-05-15       Impact factor: 28.547

5.  Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons.

Authors:  Kate D Meyer; Yogesh Saletore; Paul Zumbo; Olivier Elemento; Christopher E Mason; Samie R Jaffrey
Journal:  Cell       Date:  2012-05-17       Impact factor: 41.582

6.  The dynamic N(1)-methyladenosine methylome in eukaryotic messenger RNA.

Authors:  Dan Dominissini; Sigrid Nachtergaele; Sharon Moshitch-Moshkovitz; Eyal Peer; Nitzan Kol; Moshe Shay Ben-Haim; Qing Dai; Ayelet Di Segni; Mali Salmon-Divon; Wesley C Clark; Guanqun Zheng; Tao Pan; Oz Solomon; Eran Eyal; Vera Hershkovitz; Dali Han; Louis C Doré; Ninette Amariglio; Gideon Rechavi; Chuan He
Journal:  Nature       Date:  2016-02-10       Impact factor: 49.962

7.  Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA.

Authors:  Schraga Schwartz; Douglas A Bernstein; Maxwell R Mumbach; Marko Jovanovic; Rebecca H Herbst; Brian X León-Ricardo; Jesse M Engreitz; Mitchell Guttman; Rahul Satija; Eric S Lander; Gerald Fink; Aviv Regev
Journal:  Cell       Date:  2014-09-11       Impact factor: 41.582

8.  The m1A landscape on cytosolic and mitochondrial mRNA at single-base resolution.

Authors:  Modi Safra; Aldema Sas-Chen; Ronit Nir; Roni Winkler; Aharon Nachshon; Dan Bar-Yaacov; Matthias Erlacher; Walter Rossmanith; Noam Stern-Ginossar; Schraga Schwartz
Journal:  Nature       Date:  2017-10-25       Impact factor: 49.962

9.  Improvements to the HITS-CLIP protocol eliminate widespread mispriming artifacts.

Authors:  Austin E Gillen; Tomomi M Yamamoto; Enos Kline; Jay R Hesselberth; Peter Kabos
Journal:  BMC Genomics       Date:  2016-05-05       Impact factor: 3.969

10.  High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis.

Authors:  Schraga Schwartz; Sudeep D Agarwala; Maxwell R Mumbach; Marko Jovanovic; Philipp Mertins; Alexander Shishkin; Yuval Tabach; Tarjei S Mikkelsen; Rahul Satija; Gary Ruvkun; Steven A Carr; Eric S Lander; Gerald R Fink; Aviv Regev
Journal:  Cell       Date:  2013-11-21       Impact factor: 41.582
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  13 in total

Review 1.  Discovering and Mapping the Modified Nucleotides That Comprise the Epitranscriptome of mRNA.

Authors:  Bastian Linder; Samie R Jaffrey
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-06-03       Impact factor: 10.005

Review 2.  Chemical Modifications in the Life of an mRNA Transcript.

Authors:  Sigrid Nachtergaele; Chuan He
Journal:  Annu Rev Genet       Date:  2018-09-19       Impact factor: 16.830

3.  Anomalous Reverse Transcription through Chemical Modifications in Polyadenosine Stretches.

Authors:  Wipapat Kladwang; Ved V Topkar; Bei Liu; Ramya Rangan; Tracy L Hodges; Sarah C Keane; Hashim Al-Hashimi; Rhiju Das
Journal:  Biochemistry       Date:  2020-06-01       Impact factor: 3.162

4.  YTHDF2 Recognition of N1-Methyladenosine (m1A)-Modified RNA Is Associated with Transcript Destabilization.

Authors:  Kyung W Seo; Ralph E Kleiner
Journal:  ACS Chem Biol       Date:  2019-12-12       Impact factor: 5.100

5.  CAP-MAP: cap analysis protocol with minimal analyte processing, a rapid and sensitive approach to analysing mRNA cap structures.

Authors:  Alison Galloway; Abdelmadjid Atrih; Renata Grzela; Edward Darzynkiewicz; Michael A J Ferguson; Victoria H Cowling
Journal:  Open Biol       Date:  2020-02-26       Impact factor: 6.411

6.  Sequence- and structure-specific cytosine-5 mRNA methylation by NSUN6.

Authors:  Tommaso Selmi; Shobbir Hussain; Sabine Dietmann; Matthias Heiß; Kayla Borland; Sophia Flad; Jean-Michel Carter; Rebecca Dennison; Ya-Lin Huang; Stefanie Kellner; Susanne Bornelöv; Michaela Frye
Journal:  Nucleic Acids Res       Date:  2021-01-25       Impact factor: 16.971

7.  Eukaryotic Translation Elongation is Modulated by Single Natural Nucleotide Derivatives in the Coding Sequences of mRNAs.

Authors:  Thomas Philipp Hoernes; David Heimdörfer; Daniel Köstner; Klaus Faserl; Felix Nußbaumer; Raphael Plangger; Christoph Kreutz; Herbert Lindner; Matthias David Erlacher
Journal:  Genes (Basel)       Date:  2019-01-25       Impact factor: 4.096

8.  Transcriptome-wide profiling of multiple RNA modifications simultaneously at single-base resolution.

Authors:  Vahid Khoddami; Archana Yerra; Timothy L Mosbruger; Aaron M Fleming; Cynthia J Burrows; Bradley R Cairns
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-14       Impact factor: 11.205

9.  Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis.

Authors:  Adrian Viehweger; Sebastian Krautwurst; Kevin Lamkiewicz; Ramakanth Madhugiri; John Ziebuhr; Martin Hölzer; Manja Marz
Journal:  Genome Res       Date:  2019-08-22       Impact factor: 9.043

10.  Repurposing RNA sequencing for discovery of RNA modifications in clinical cohorts.

Authors:  Kar-Tong Tan; Ling-Wen Ding; Chan-Shuo Wu; Daniel G Tenen; Henry Yang
Journal:  Sci Adv       Date:  2021-08-04       Impact factor: 14.136
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