| Literature DB >> 29070014 |
Xiangyi Kong1,2,3, Hao Deng2, Shun Gong4,5, Theodore Alston2, Yanguo Kong6, Jingping Wang7.
Abstract
BACKGROUND: Studies have sought associations of the opioid receptor mu 1 (OPRM1) A118G polymorphism (rs1799971) with alcohol-dependence, but findings are inconsistent. We summarize the information as to associations of rs1799971 (A > G) and the alcohol-dependence.Entities:
Keywords: Alcohol-dependence; Meta-analysis; OPRM1 A118G; Polymorphism; Rs1799971
Mesh:
Substances:
Year: 2017 PMID: 29070014 PMCID: PMC5657079 DOI: 10.1186/s12881-017-0478-4
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Previous studies about genome- or phenome-wide association studies of alcohol dependence
| Association type | Author | Year | Country | PMID | Subjects number | Key findings |
|---|---|---|---|---|---|---|
| Genome-wide association studies | Gelernter J et al. [ | 2014 | USA | 24,166,409 | 16,087 | 1. They confirmed well-known risk loci mapped to alcohol-metabolizing enzyme genes, notably ADH1B in European-American (EA) and African-American (AA) populations and ADH1C in AAs, and identified novel risk loci mapping to the ADH gene cluster on chromosome 4 and extending centromerically beyond it to include GWS associations at LOC100507053 in AAs, PDLIM5 in EAs, and METAP in AAs. |
| Xu K et al. [ | 2015 | USA | 26,036,284 | 9500 | 1. The results confirmed significant associations of the well-known functional loci at ADH1B with MaxDrinks in EAs and AAs. The region of significant association on chromosome 4 was extended to LOC100507053 in AAs but not EAs. | |
| Mbarek H et al. [ | 2015 | Netherlands | 26,365,420 | 7842 | 1. GWAS SNP effect concordance analysis was performed between GWAS and a recent alcohol dependence GWAS using DSM-IV diagnosis. The twin-based heritability of alcohol dependence-AUDIT was estimated at 60% (55–69%). | |
| Polimanti R et al. [ | 2017 | USA | 26,458,734 | 5546 | 1. In the stage 1 sample, they observed 3 GWS SNP associations, rs200889048 and rs12490016 in EAs and rs1630623 in AAs and EAs meta-analyzed. | |
| Meyers JL et al. [ | 2017 | USA | 28,070,124 | 2382 | 1. Ten correlated SNPs located in an intergenic region on chromosome 3q26 were associated with fast beta (20–28 Hz) EEG power at | |
| Phenome-wide association studies | Polimanti R et al. [ | 2016 | USA | 27,187,070 | 26,394 | 1. They replicated prior associations with drinking behaviors and identified multiple novel phenome-wide significant and suggestive findings related to psychological traits, socioeconomic status, vascular/metabolic conditions, and reproductive health. |
Inclusion criteria for this meta-analysis
| Number | Inclusion criteria |
| 1 | Case-control studies. |
| 2 | The studies evaluated the associations between OPRM1 A118G polymorphism and alcohol dependence. |
| 3 | The studies included detailed genotyping data (total number of cases and controls, number of cases and controls with A/A, A/G, and G/G genotypes). |
| 4 | Studies focusing on human being. |
| Number | Exclusion criteria |
| 1 | The design of the experiments was not case-control. |
| 2 | The source of cases and controls, and other essential information were not provided. |
| 3 | The genotype distribution of the control population was not in accordance with the Hardy–Weinberg equilibrium (HWE). |
| 4 | Reviews and duplicated publications. |
Scale for methodological quality assessment
| Criteria | Score |
|---|---|
| 1. Representativeness of cases | |
| RA diagnosed according to acknowledged criteria. | 2 |
| Mentioned the diagnosed criteria but not specifically described. | 1 |
| Not Mentioned. | 0 |
| 2. Source of controls | |
| Population or community based | 3 |
| Hospital-based RA-free controls | 2 |
| Healthy volunteers without total description | 1 |
| RA-free controls with related diseases | 0.5 |
| Not described | 0 |
| 3. Sample size | |
| > 300 | 2 |
| 200–300 | 1 |
| < 200 | 0 |
| 4. Quality control of genotyping methods | |
| Repetition of partial/total tested samples with a different method | 2 |
| Repetition of partial/total tested samples with the same method | 1 |
| Not described | 0 |
| 5. Hardy-Weinberg equilibrium (HWE) | |
| Hardy-Weinberg equilibrium in control subjects | 1 |
| Hardy-Weinberg disequilibrium in control subjects | 0 |
The statistical methods used in this meta-analysis and there explanation
| Statistic means | Goals and Usages | Explanation |
|---|---|---|
| Labbe plot | To evaluate heterogeneity between the included studies | In Labbe figure, if the points basically present as a linear distribution, it can be taken as an evidence of homogeneity. |
| Cochran’s Q test | To evaluate heterogeneity between the included studies | Cochran’s Q test is an extension to the McNemar test for related samples that provides a method for testing for differences between three or more matched sets of frequencies or proportions. Heterogeneity was also considered significant if |
| I2 index test | To evaluate heterogeneity between the included studies | The I2 index measures the extent of true heterogeneity dividing the difference between the result of the Q test and its degrees of freedom (k – 1) by the Q value itself, and multiplied by 100. I2 values of 25%, 50% and 75% were used as evidence of low, moderate and high heterogeneity, respectively. |
| Sensitivity analysis | To examine the stability of the pooled results | A sensitivity analysis was performed using the one-at-a-time method, which involved omitting one study at a time and repeating the meta-analysis. If the omission of one study significantly changed the result, it implied that the result was sensitive to the studies included. |
| Contour-enhanced funnel plot | Publication bias test | Visual inspection of the Contour-enhanced funnel plots was used to assess potential publication bias. Asymmetry in the plots, which may be due to studies missing on the left-hand side of the plot that represents low statistical significance, suggested publication bias. If studies were missing in the high statistical significance areas (on the right-hand side of the plot), the funnel asymmetry was not considered to be due to publication bias |
Fig. 1Literature search and selection of articles
Characteristics of studies included in the meta-analysis
| Author | Year | Country | Ethnicity | Disease type | Genotyping | Source of controls | Alcohol-dependence (n) | Controls (n) | P for HWE | Quality | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total | AA | AG | GG | Total | AA | AG | GG | |||||||||
| Bergen et al. | 1997 | USA | Caucasian | Alcohol-dependence | Direct sequencing and PCR-RFLP | Population-based | 160 | 123 | 35 | 2 | 264 | 204 | 59 | 1 | 0.1285 | 7 |
| Sander et al. | 1998 | German | Caucasian | Alcohol-dependence | PCR-RFLP | Population-based | 327 | 261 | 62 | 4 | 340 | 289 | 49 | 2 | 0.9606 | 6 |
| Franke et al. | 2001 | German | Caucasian | Alcohol-dependence | Direct sequencing and PCR-RFLP | Mixed | 221 | 170 | 50 | 1 | 365 | 284 | 74 | 7 | 0.4024 | 8 |
| Schinka et al. | 2002 | USA | Caucasian | Alcohol-dependence | Puregene™ kit or standard phenol-chloroform method | Population-based | 179 | 152 | 27 | 0 | 297 | 220 | 73 | 4 | 0.4531 | 7 |
| Kim et al. | 2004 | Korea | Asian | Alcohol-dependence | PCR-RFLP | Hospital-based | 100 | 46 | 47 | 7 | 128 | 54 | 53 | 21 | 0.2014 | 8 |
| Kim et al. | 2004 | Korea | Asian | Alcohol-dependence | PCR-RFLP | Hospital-based | 112 | 37 | 61 | 14 | 140 | 68 | 57 | 15 | 0.5582 | 7 |
| Loh et al. | 2004 | China Taiwan | Asian | Alcohol-dependence | PCR-RFLP | Mixed | 154 | 59 | 77 | 18 | 146 | 70 | 56 | 20 | 0.1136 | 8 |
| Bart et al. | 2005 | USA | Caucasian | Alcohol-dependence | PCR-RFLP | Population-based | 389 | 299 | 90 | 170 | 147 | 23 | Not available | 8 | ||
| Nishizawa et al. | 2006 | Japan | Asian | Alcohol-dependence | PCR-RFLP | Population-based | 64 | 12 | 37 | 15 | 74 | 26 | 33 | 15 | 0.4493 | 8 |
| Zhang et al. | 2006 | USA and Russia | Caucasian | Alcohol-dependence | PCR-RFLP | Mixed | 318 | 246 | 68 | 4 | 338 | 256 | 78 | 4 | 0.4713 | 7 |
| Deb et al. | 2010 | India | Asian | Alcohol-dependence | PCR-RFLP | Mixed | 53 | 16 | 32 | 5 | 82 | 44 | 30 | 8 | 0.3967 | 8 |
| Miranda et al. | 2010 | USA | Caucasian | Alcohol-dependence | TaqMan assays | Population-based | 27 | 13 | 14 | 160 | 134 | 26 | > 0.05 | 8 | ||
| Dou et al. | 2011 | China | Asian | Alcohol-dependence | PCR-RFLP | Population-based | 118 | 48 | 53 | 17 | 218 | 74 | 110 | 34 | 0.5127 | 6 |
| Koller et al. | 2012 | Germany | Caucasian | Alcohol-dependence | Fluorescence resonance energy transfer method | Hospital-based | 1845 | 1461 | 353 | 31 | 1863 | 1417 | 419 | 27 | 0.5275 | 9 |
| Huang et al. | 2012 | China | Asian | Alcohol-dependence | PCR-RFLP | Population-based | 45 | 33 | 11 | 1 | 45 | 33 | 12 | 0 | 0.3021 | 6 |
| Francesc | 2015 | Spain | Caucasian | Alcohol-dependence | PCR-RFLP | Population-based | 630 | 425 | 190 | 15 | 133 | 101 | 30 | 2 | 0.893 | 7 |
| Jin | 2015 | China | Asian | Alcohol-dependence | PCR-RFLP | Population-based | 58 | 41 | 12 | 5 | 50 | 39 | 9 | 2 | 0.1487 | 7 |
The results of meta-analysis for various genotype models
| Genetic model | Heterogeneity test | Test of Association | Publication bias | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Name | Explanation | Ethnicity | Q value | d.f. | I-squared | Tau-squared |
| Heterogeneity | Effect model | Pooled OR | 95% CI | Z value |
| Statistical significance | |
| Allele model | G vs. A | Caucasian | 17.38 | 6 | 65.5% | 0.0493 | 0.008 | Yes | Random | 0.985 | [0.797, 1.217] | 0.14 | 0.888 | No | No |
| Asian | 14.90 | 7 | 53.0% | 0.0564 | 0.037 | Yes | Random | 1.100 | [0.871, 1.390] | 0.80 | 0.421 | No | |||
| Total | 34.85 | 14 | 59.8% | 0.0487 | 0.002 | Yes | Random | 1.037 | [0.890, 1.210] | 0.47 | 0.640 | No | |||
| Homozygote model | GG vs. AA | Caucasian | 5.60 | 6 | 0.0% | NA | 0.469 | No | Random | 1.119 | [0.731, 1.714] | 0.52 | 0.605 | No | No |
| Asian | 10.22 | 7 | 31.5% | NA | 0.176 | No | Random | 1.146 | [0.743, 1.767] | 0.62 | 0.538 | No | |||
| Total | 15.81 | 14 | 11.4% | NA | 0.325 | No | Random | 1.118 | [0.830, 1.506] | 0.74 | 0.462 | No | |||
| Heterozygote model | AG vs. AA | Caucasian | 16.71 | 6 | 64.1% | 0.0575 | 0.010 | Yes | Random | 0.983 | [0.780, 1.237] | 0.15 | 0.882 | No | No |
| Asian | 15.58 | 7 | 55.1% | 0.1296 | 0.029 | Yes | Random | 1.433 | [1.015, 2.023] | 2.04 | 0.041 | No | |||
| Total | 42.72 | 14 | 67.2% | 0.1017 | 0.000 | Yes | Random | 1.155 | [0.935, 1.427] | 1.34 | 0.181 | No | |||
| Dominant model | AG + GG vs. AA | Caucasian | 41.43 | 8 | 80.7% | 0.1518 | 0.000 | Yes | Random | 1.185 | [0.882, 1.593] | 1.13 | 0.259 | No | No |
| Asian | 16.65 | 7 | 58.0% | 0.1310 | 0.020 | Yes | Random | 1.379 | [0.983, 1.934] | 1.86 | 0.063 | No | |||
| Total | 63.64 | 16 | 74.9% | 0.1467 | 0.000 | Yes | Random | 1.261 | [1.008, 1.578] | 2.03 | 0.042 | No | |||
| Recessive model | GG vs. AA + AG | Caucasian | 5.24 | 6 | 0.0% | NA | 0.513 | No | Random | 1.142 | [0.746, 1.747] | 0.61 | 0.542 | No | No |
| Asian | 6.21 | 7 | 0.0% | NA | 0.516 | No | Random | 0.919 | [0.673, 1.255] | 0.53 | 0.595 | No | |||
| Total | 12.06 | 14 | 0.0% | NA | 0.602 | No | Random | 0.991 | [0.771, 1.275] | 0.07 | 0.946 | No | |||
Fig. 2Labbe plots, sensitivity analysis plots, and contour-enhanced funnel plots of the included studies focusing on the association of the OPRM1 A118G polymorphism with alcohol dependence risk. Labbe plots in allele model (a), heterozygote model (b), and dominant model (c). Sensitivity analysis in allele model (d), heterozygote model (e), and dominant model (f). Contour-enhanced funnel plots in allele model (g), heterozygote model (h), and dominant model (i)
Fig. 6Forest plots (individual and pooled effects with 95% CI) regarding the association of the OPRM1 A118G polymorphism with alcohol dependence in the dominant model
Fig. 3Forest plots (individual and pooled effects with 95% CI) regarding the association of the OPRM1 A118G polymorphism with alcohol dependence in the allele model
Fig. 4Forest plots (individual and pooled effects with 95% CI) regarding the association of the OPRM1 A118G polymorphism with alcohol dependence in the homozygote model
Fig. 5Forest plots (individual and pooled effects with 95% CI) regarding the association of the OPRM1 A118G polymorphism with alcohol dependence in the heterozygote model
Fig. 7Forest plots (individual and pooled effects with 95% CI) regarding the association of the OPRM1 A118G polymorphism with alcohol dependence in the recessive model