| Literature DB >> 29067333 |
Jon Neville1, Steve Kopko2, Klaus Romero1, Brian Corrigan3, Bob Stafford1, Elizabeth LeRoy2, Steve Broadbent1, Martin Cisneroz4, Ethan Wilson5, Eric Reiman6, Hugo Vanderstichele7, Stephen P Arnerić1, Diane Stephenson1.
Abstract
INTRODUCTION: The exceedingly high rate of failed trials in Alzheimer's disease (AD) calls for immediate attention to improve efficiencies and learning from past, ongoing, and future trials. Accurate, highly rigorous standardized data are at the core of meaningful scientific research. Data standards allow for proper integration of clinical data sets and represent the essential foundation for regulatory endorsement of drug development tools. Such tools increase the potential for success and accuracy of trial results.Entities:
Keywords: Biomarkers; CDISC; Clinical outcome assessments; Clinical trials; Data science; Data standards; Drug development and Alzheimer's disease; Mild cognitive impairment; Regulatory science; Therapeutic Area User Guide; Translational science
Year: 2017 PMID: 29067333 PMCID: PMC5651436 DOI: 10.1016/j.trci.2017.03.006
Source DB: PubMed Journal: Alzheimers Dement (N Y) ISSN: 2352-8737
Description of relevant CDISC standards
| CDISC terms | Description |
|---|---|
| Study Data Tabulation Model (SDTM) | Specification for creation of data sets for data storage |
| Study Data Tabulation Model Implementation Guide (SDTMIG) | Describes how study sponsors should implement SDTM using “domains” |
| Clinical Data Acquisition Standards Harmonization (CDASH) | Describes the recommended fields to be captured in data acquisition |
| Analysis Data Model (ADaM) | Standard for analysis subsets. Describes the efficient generation, replication, and review of clinical trial statistical analyses, with traceability to SDTM |
| Therapeutic Area User Guide (TAUG) | Document intended to guide users on how to implement the standards in therapeutic area-specific studies |
Abbreviation: CDISC, Clinical Data Interchange Standards Consortium.
Fig. 1Development process for CDISC AD V2.0 TAUG. CAMD scientists assembled an inventory of the types of data relevant to clinical studies of AD and MCI. These were compared with data dictionaries from ADNI and the pooled items were reduced to 49 tables of data elements based on removing duplicates, concepts already covered by published CDISC standards, and items that were irrelevant or out of scope. The remaining elements were categorized as imaging biomarkers, CSF biomarkers, or COAs. A development team consisting of clinical SMEs and standards experts worked together to capture the relevant details of the scoped concepts and assemble them into a user guide showing how to represent them and relate records in CDISC SDTM. Abbreviations: AD, Alzheimer's disease; ADNI, Alzheimer's Disease Neuroimaging Initiative; CAMD, Coalition Against Major Diseases; CDISC, Clinical Data Interchange Standards Consortium; COA, clinical outcome assessment; CSF, cerebrospinal fluid; MCI, mild cognitive impairment; SDTM, Study Data Tabulation Model; SME, subject-matter expert; TAUG, Therapeutic Area User Guide.
Fig. 2Concept modeling involves iterative discussions between clinical subject-matter experts and data modeling experts to parse the various concepts and relevant qualifiers that describe the pertinent information and data generated within a given research topic. The resulting “concept maps” (examples shown in panels A, B, and C) are the first stage in the development of data models that describe how individual data elements relate to each other so that the resulting data model accounts for and preserves these relationships. (A) A concept map depicting CSF sample processing and the parameters that can impact the results. The color-coding on the perimeter of gray boxes defines observation classes within the CDISC BRIDG model (not discussed). Yellow boxes correspond to the CDISC SDTM domain (data set) where the concepts described reside in SDTM. (B) Concept map depicting MRI for the acquisition of volumetric biomarkers. To fully represent an MRI scan data should be collected regarding subject characteristics, whether contrast enhancement was used, scanner-specific properties, and software properties that determine the anatomic location scanned, pulse-sequence data, and the analysis algorithm to name a few. The color-coding on the perimeter of gray boxes defines observation classes within the CDISC BRIDG model (not discussed). Yellow boxes correspond to the CDISC SDTM domain (data set) where the concepts described reside. (C) Concept map depicting PET scans. Molecular imaging biomarkers in AD V2.0 standards include radiotracers for FDG-PET and amyloid β. PET imaging parameters that are critical to capture include metabolic status/fasting of patient, reference region, and scanner type among others. Abbreviations: AG, procedure agents domain; BE, biospecimen events domain; BRIDG, biomedical research information domain grid; CDISC, Clinical Data Interchange Standards Consortium; CSF, cerebrospinal fluid; CT, computed tomography; FDG-PET, fluorodeoxyglucose–positron emission tomography; LB, laboratory test results domain; MO, morphology domain; MRI, magnetic resonance imaging; NV, nervous system findings domain; PR, procedures domain; SDTM, Study Data Tabulation Model; SUPPMO, supplemental morphology domain; SUPPNV, supplemental nervous systems findings domain.
Comparison of different study sponsors' implementation of ADAS-Cog
| Item | Study 1 | Study 2 | Study 3 | Study 4 | Study 5 | Study 6 | Study 7 |
|---|---|---|---|---|---|---|---|
| 1 | Word Recall | Word Recall | Word Recall | Word Recall | Word Recall | Word Recall | Word Recall |
| 2 | Commands | Name Obj./Fingers | Name Obj./Fingers | Commands | Name Obj./Fingers | Name Obj./Fingers | Name Obj./Fingers |
| 3 | Constr. Praxis | Delayed Recall | Commands | Constr. Praxis | Commands | Commands | Commands |
| 4 | Delayed Recall | Commands | Constr. Praxis | Delayed Recall | Delayed Recall | Constr. Praxis | Constr. Praxis |
| 5 | Name Obj./Fingers | Constr. Praxis | Idea. Praxis | Name Obj./Fingers | Constr. Praxis | Idea. Praxis | Idea. Praxis |
| 6 | Idea. Praxis | Idea. Praxis | Orientation | Idea. Praxis | Idea. Praxis | Orientation | Orientation |
| 7 | Orientation | Orientation | Word Recog. | Orientation | Orientation | Word Recog. | Word Recog. |
| 8 | Word Recog. | Word Recog. | Remem. Instr. | Word Recog. | Word Recog. | Remem. Instr. | Spoken Lang. Abil. |
| 9 | Remem. Instr. | Remem. Instr. | Spoken Lang. Abil. | Remem. Instr. | Remem. Instr. | Spoken Lang. Abil. | Comprehension |
| 10 | Comprehension | Spoken Lang. Abil. | Word Finding Dif. | Spoken Lang. Abil. | Spoken Lang. Abil. | Word Finding Dif. | Word Finding Dif. |
| 11 | Word Finding Dif. | Word Finding Dif. | Comprehension | Diff. Spont. Speech | Word Finding Dif. | Comprehension | Remem. Instr. |
| 12 | Spoken Lang. Abil. | Comprehension | Concentration | Comprehension | Comprehension | Concentration | |
| 13 | Number Cancel | Concentration | Concentration | Concentration |
Abbreviations: ADAS-Cog, Alzheimer's Disease Assessment Scale–Cognitive subscale; Constr. Praxis, constructional praxis; Diff. Spont. Speech, difficulty with spontaneous speech; Idea. Praxis, ideational praxis; Name Obj./Fingers, naming objects and fingers; Number Cancel., number cancellation; Remem. Instr., remembering instructions; Spoken Lang. Abil., spoken language ability; Word Finding Dif., word finding difficulty; Word Recog., word recognition.
NOTE. Seven Clinical Report Forms (CRFs) from seven individual sponsors were provided to the Coalition Against Major Diseases team for analysis. Each study originates from distinctive sponsors. All points of contact for the different data sources could not confirm with certainty that the order of the ADAS-Cog items in the CRFs reflected the order in which they were administered in the clinical trials. The order in which ADAS-Cog items were reported across the seven CRFs varied for a total number of items ranging from two to 10. Four CRFs reported the trials as having used the 13-item ADAS-Cog scale, two CRFs reported using 12 items of the 13-item ADAS-Cog, and one CRF reported the use of the 11-item ADAS-Cog scale. All CRFs reported the administration of word recall first, and no CRF reported administering word recognition last (which is recommended in the ADAS-Cog administration instructions); three CRFs reported administering word recognition as the seventh item/cognitive test, and four CRFs reported administering word recognition as the eighth item/cognitive test.
Concepts covered by the Alzheimer's CDISC User Guide, V2.0
| Concept | Comments |
|---|---|
| Shows how to represent genotype as one record per allele | |
| Family history of AD | |
| Volumetric MRI | Total brain volume, hippocampus volume (left and right), ventricular space volume, and BBSI |
| PET, PET-CT (FDG, Florbetapir, PiB) | SUVR, scan parameters, radiotracers, and procedure details (fasting status, and so forth) |
| CSF biomarkers and sampling | Procedure details (location of puncture, time of day, needle gauge, and so forth.), storage tube composition, freeze thaw cycles, Aβ, total tau, and phosphor-tau measures |
| Clinical outcome assessment instruments | |
| ADAS-Cog | Alzheimer's Disease Assessment Scale–Cognitive subscale. Includes item- and subitem-level scores |
| MMSE | Mini–Mental State Examination. Will be made available to licensees through the copyright-holder's website |
| CDR | Clinical Dementia Rating. Standard specifications developed. Negotiations ongoing with copyright holder on how to publish these specifications |
| FAQ | Functional Assessment Questionnaire |
| MHIS-NACC | Modified Hachinski Ischemic Scale—NACC Version |
| DAD | Disability Assessment for Dementia |
| ADCS-ADL MCI | Alzheimer's Disease Cooperative Study–Activities of Daily Living–MCI |
| NPI | Neuropsychiatric Inventory |
Abbreviations: AD, Alzheimer's disease; APOE, apolipoprotein E; BBSI, brain boundary shift integral; CSF, cerebrospinal fluid; CT, computed tomography; MCI, mild cognitive impairment; MRI, magnetic resonance imaging; NACC, National Alzheimer's Coordinating Center version; PET, positron emission tomography; PiB, Pittsburgh compound B; SUVR, standard uptake value ratio.
Future recommendations to enable efficient execution of novel AD treatments
Prospective use of AD CDISC biomarker and clinical data standards in ongoing and prospective clinical trials of subjects with AD Continued engagement with submission of data and methodology to regulatory agencies in alignment with AD CDISC standards Expanded alliances of all stakeholder groups in implementing the use of AD CDISC standards, particularly precompetitive consortium working on discovery, validation, and regulatory endorsement of AD biomarkers. Enhanced focus on preanalytical factors in all biomarker studies Initiate data standards development for the aggregation of biosensor performance measures (both wearable devices and remote monitoring) that are increasingly being integrated into both observational and clinical trials designs Full engagement and active participation of all stakeholders and sponsors conducting AD clinical trials and biomarker discovery research, such as diagnostic companies and manufacturers, in embracing the use of AD CDISC standards and providing input on future versions of the standards Development of open-source data handling and analysis tools (based on the standards) that provide incentive and added value to users and that facilitate the use of the common data through capture, analysis, submission, regulatory review, and approvals Increased incentives to comply with CDISC standards (RFAs, funding, industry incentives; e.g., TBI seed grant RFA) Development of translational standards in the area of biomarkers (biomarkers that enable decision making from animals to clinic) (i.e., preclinical common data elements [CDEs] for TBI, Smith et al., 2015 |
Abbreviations: AD, Alzheimer's disease; CDE, common data element; CDISC, Clinical Data Interchange Standards Consortium; RFA, request for application; TBI, traumatic brian injury.