Literature DB >> 29067333

Accelerating drug development for Alzheimer's disease through the use of data standards.

Jon Neville1, Steve Kopko2, Klaus Romero1, Brian Corrigan3, Bob Stafford1, Elizabeth LeRoy2, Steve Broadbent1, Martin Cisneroz4, Ethan Wilson5, Eric Reiman6, Hugo Vanderstichele7, Stephen P Arnerić1, Diane Stephenson1.   

Abstract

INTRODUCTION: The exceedingly high rate of failed trials in Alzheimer's disease (AD) calls for immediate attention to improve efficiencies and learning from past, ongoing, and future trials. Accurate, highly rigorous standardized data are at the core of meaningful scientific research. Data standards allow for proper integration of clinical data sets and represent the essential foundation for regulatory endorsement of drug development tools. Such tools increase the potential for success and accuracy of trial results.
METHODS: The development of the Clinical Data Interchange Standards Consortium (CDISC) AD therapeutic area data standard was a comprehensive collaborative effort by CDISC and Coalition Against Major Diseases, a consortium of the Critical Path Institute. Clinical concepts for AD and mild cognitive impairment were defined and a data standards user guide was created from various sources of input, including data dictionaries used in AD clinical trials and observational studies.
RESULTS: A comprehensive collection of AD-specific clinical data standards consisting of clinical outcome measures, leading candidate genes, and cerebrospinal fluid and imaging biomarkers was developed. The AD version 2.0 (V2.0) Therapeutic Area User Guide was developed by diverse experts working with data scientists across multiple consortia through a comprehensive review and revision process. The AD CDISC standard is a publicly available resource to facilitate widespread use and implementation. DISCUSSION: The AD CDISC V2.0 data standard serves as a platform to catalyze reproducible research, data integration, and efficiencies in clinical trials. It allows for the mapping and integration of available data and provides a foundation for future studies, data sharing, and long-term registries in AD. The availability of consensus data standards for AD has the potential to facilitate clinical trial initiation and increase sharing and aggregation of data across observational studies and among clinical trials, thereby improving our understanding of disease progression and treatment.

Entities:  

Keywords:  Biomarkers; CDISC; Clinical outcome assessments; Clinical trials; Data science; Data standards; Drug development and Alzheimer's disease; Mild cognitive impairment; Regulatory science; Therapeutic Area User Guide; Translational science

Year:  2017        PMID: 29067333      PMCID: PMC5651436          DOI: 10.1016/j.trci.2017.03.006

Source DB:  PubMed          Journal:  Alzheimers Dement (N Y)        ISSN: 2352-8737


Introduction

Data standards and the current landscape of Alzheimer's disease drug development

Drug development in Alzheimer's disease (AD) is increasingly being aimed at early intervention, with the recognition that such strategies hold the most promise to slow or halt disease progression [1]. New drug development tools such as disease progression models, biomarkers, and outcome measures that can easily and rapidly incorporate new and existing sources of information are urgently needed to accelerate drug development at all stages of the AD disease spectrum. The development and regulatory endorsement of these tools has been hampered by the lack of consensus data standards that cover both clinical and biomarker assessments allowing for rapid integrated analyses derived from multiple data sources. The inability to compare data across different clinical trials arises in part because of differences between them, including data collection and format. Data standards enable the integration and analysis of data from multiple sources. This, in turn, allows for development of common open-source tools [2], [3]. Data standards provide the framework for consistent structure and understanding of data. Use of data standards results in an increase in efficiency of studies by maximizing data utility, minimizing reprocessing of data, and expediting regulatory review of new drug applications (NDAs). Standards also enable integrated analyses across different studies by allowing integration of data and reusability of programming statements within analysis software. Research organizations have responded to the need for data standards by creating many different sets of standards [4]. Pharmaceutical companies have also created their own internal data standards, whereas government agencies have recommended and even required use of specific standards to funders [5]. Given the rapid increase in global data availability [6] and an increasing number of experimental treatment modalities, an efficient way to compare effects on clinically meaningful outcomes is critical for selecting the most promising therapeutics to advance to the clinic. To maximize the knowledge from the growing number of costly and high risk AD intervention studies, it is imperative that the field attend to the importance of data standardization, beginning at study start-up.

Clinical Data Interchange Standards Consortium data standards

The development and widespread dissemination of universally accepted global clinical data standards is the mission of the Clinical Data Interchange Standards Consortium (CDISC), which has been developing global, platform-independent standards to streamline medical research since 1997 [7]. CDISC is a global nonprofit organization that catalyzes productive collaboration to develop freely available, industry-wide clinical research data standards. The primary CDISC standard governing the structure of data collected in clinical studies is the Study Data Tabulation Model (SDTM), which defines the variables and rules associated with specific observation classes including events, interventions, and findings. SDTM is one of the required standards that sponsors must use for NDAs submitted for the U.S. Food and Drug Administration (FDA) review [8]. The implementation of consensus-based CDISC clinical data standards serves to improve medical research and health care [9]. Such standards support the acquisition, exchange, archiving, and reporting of electronic clinical research data. Notably, CDISC standards are recognized by the FDA and Japan's Pharmaceuticals and Medical Devices Agency as the preferred standards for submission of clinical trial data and enable regulatory reviewers to use sophisticated review tools and conduct more efficient reviews. Public-private partnerships and precompetitive consortia have emerged as a common strategy to share the cost and risk of development of consensus data standards. The Alzheimer's Disease Neuroimaging Initiative (ADNI), formed in 2004, catalyzed awareness and external recognition of the importance of data standardization in the AD research community [10]. In a parallel effort, two nonprofit organizations, CDISC and the Critical Path Institute (C-Path), created the Coalition for the Acceleration of Standards and Therapies in 2012 to develop Therapeutic Area User Guides (TAUGs) for specific disease areas. The focus of the first CDISC therapeutic specific standard was AD, which used elements from ADNI. AD version 1.0 (V1.0) was completed in 2011. As of January 2017, a total of 27 TAUGs spanning a variety of different disease conditions have been developed by CDISC, most of them under the umbrella of Coalition for the Acceleration of Standards and Therapies. There are a growing number of public-private partnerships focused on AD [11]. The Coalition Against Major Diseases (CAMD), whose mission is to accelerate the path of drug development, is one of many consortia of C-Path [12]. CAMD is a coalition of stakeholders including industry, government agencies, nonprofit organizations, advocacy organizations, academic experts, and regulatory agencies collaborating to improve the efficiency of drug development for memory disorders [13], [14]. CAMD, in close partnership with CDISC and ADNI, represented the key groups that formed the collaborative framework for stakeholders working across consortia to successfully develop CDISC standards specific for AD. This study discusses the development of the first therapeutic area-specific CDISC standard, how the CDISC standards are used, the need for additional standards, and, most importantly, the need to implement these standards across clinical studies to maximize knowledge gained from past, current, and future clinical trials.

Methods

The primary foundational CDISC data standards are the SDTM, the Analysis Data Model (ADaM), and the Clinical Data Acquisition Standards Harmonization (CDASH) model. SDTM is a standard specification for structuring and organizing data, whereas ADaM is used for the analysis of data sets. CDASH provides traceability from SDTM data sets back to data collection instruments. A complete guide for CDISC SDTM implementation is available [15]. Table 1 identifies these foundational CDISC standards and their descriptions.
Table 1

Description of relevant CDISC standards

CDISC termsDescription
Study Data Tabulation Model (SDTM)Specification for creation of data sets for data storage
Study Data Tabulation Model Implementation Guide (SDTMIG)Describes how study sponsors should implement SDTM using “domains”
Clinical Data Acquisition Standards Harmonization (CDASH)Describes the recommended fields to be captured in data acquisition
Analysis Data Model (ADaM)Standard for analysis subsets. Describes the efficient generation, replication, and review of clinical trial statistical analyses, with traceability to SDTM
Therapeutic Area User Guide (TAUG)Document intended to guide users on how to implement the standards in therapeutic area-specific studies

Abbreviation: CDISC, Clinical Data Interchange Standards Consortium.

Description of relevant CDISC standards Abbreviation: CDISC, Clinical Data Interchange Standards Consortium. The development of the AD CDISC data standard occurred in a series of stages that gathered input from a diverse set of experts including CAMD members, subject-matter experts within ADNI, and CDISC experts. Clinical scientists contributed to an understanding of the clinical concepts and interrelationships that affect the usability and analysis of the data that results from the application of these concepts in a well-controlled study. CDISC experts, whose expertise includes the ability to fit these concepts within the confines of the standard data model, in turn worked with the broader standards community to ensure the resulting specifications were accurate, consistent, and appropriate within the context of the full body of existing CDISC standards and their associated rules. A TAUG is a compilation of concepts, including concept maps (defined subsequently), brief narratives explaining the concept in the context of a disease area, and implementation examples illustrating the implementation of these concepts across the various CDISC standards (Table 1). The primary sources of input to the AD TAUG were (1) inventories of clinical concepts identified by consensus with CAMD scientists and (2) ADNI data dictionaries. Subject-matter experts from CAMD and ADNI provided clinical expert input into the development of these standards, whereas working groups of CDISC experts mapped concepts relevant to AD to CDISC SDTM and developed controlled terminology to support the use of these standards in clinical trials. CDASH and ADaM were out of scope for both versions 1.0 and 2.0 of the AD TAUGs. Fig. 1 illustrates the process used by developers of standards for vetting the inputs and for compiling and publishing the content in the CDISC AD TAUG V2.0. The development and final public release of AD V2.0 outlined in Fig. 1 was carried out for more than a period of 12 months.
Fig. 1

Development process for CDISC AD V2.0 TAUG. CAMD scientists assembled an inventory of the types of data relevant to clinical studies of AD and MCI. These were compared with data dictionaries from ADNI and the pooled items were reduced to 49 tables of data elements based on removing duplicates, concepts already covered by published CDISC standards, and items that were irrelevant or out of scope. The remaining elements were categorized as imaging biomarkers, CSF biomarkers, or COAs. A development team consisting of clinical SMEs and standards experts worked together to capture the relevant details of the scoped concepts and assemble them into a user guide showing how to represent them and relate records in CDISC SDTM. Abbreviations: AD, Alzheimer's disease; ADNI, Alzheimer's Disease Neuroimaging Initiative; CAMD, Coalition Against Major Diseases; CDISC, Clinical Data Interchange Standards Consortium; COA, clinical outcome assessment; CSF, cerebrospinal fluid; MCI, mild cognitive impairment; SDTM, Study Data Tabulation Model; SME, subject-matter expert; TAUG, Therapeutic Area User Guide.

Development process for CDISC AD V2.0 TAUG. CAMD scientists assembled an inventory of the types of data relevant to clinical studies of AD and MCI. These were compared with data dictionaries from ADNI and the pooled items were reduced to 49 tables of data elements based on removing duplicates, concepts already covered by published CDISC standards, and items that were irrelevant or out of scope. The remaining elements were categorized as imaging biomarkers, CSF biomarkers, or COAs. A development team consisting of clinical SMEs and standards experts worked together to capture the relevant details of the scoped concepts and assemble them into a user guide showing how to represent them and relate records in CDISC SDTM. Abbreviations: AD, Alzheimer's disease; ADNI, Alzheimer's Disease Neuroimaging Initiative; CAMD, Coalition Against Major Diseases; CDISC, Clinical Data Interchange Standards Consortium; COA, clinical outcome assessment; CSF, cerebrospinal fluid; MCI, mild cognitive impairment; SDTM, Study Data Tabulation Model; SME, subject-matter expert; TAUG, Therapeutic Area User Guide. The foremost tool available to developers of standards for building understanding of clinical concepts within these multidisciplinary teams is the “concept map” [16]. Concept maps are the result of concept modeling, whereby knowledge imparted to data modelers from clinical scientists is represented in visual models that describe the process of how a concept is applied and how it results in data elements in a database. These maps enable the experts to ensure that they have reached a common understanding of the concept illustrated. The maps also serve as the first step in fitting the concept into the data model. The interdisciplinary approach ensures that these resulting data models accurately capture the concept and are usable by implementers and analysts. Examples of concept maps developed in the TAUG AD V2.0 are illustrated in Fig. 2.
Fig. 2

Concept modeling involves iterative discussions between clinical subject-matter experts and data modeling experts to parse the various concepts and relevant qualifiers that describe the pertinent information and data generated within a given research topic. The resulting “concept maps” (examples shown in panels A, B, and C) are the first stage in the development of data models that describe how individual data elements relate to each other so that the resulting data model accounts for and preserves these relationships. (A) A concept map depicting CSF sample processing and the parameters that can impact the results. The color-coding on the perimeter of gray boxes defines observation classes within the CDISC BRIDG model (not discussed). Yellow boxes correspond to the CDISC SDTM domain (data set) where the concepts described reside in SDTM. (B) Concept map depicting MRI for the acquisition of volumetric biomarkers. To fully represent an MRI scan data should be collected regarding subject characteristics, whether contrast enhancement was used, scanner-specific properties, and software properties that determine the anatomic location scanned, pulse-sequence data, and the analysis algorithm to name a few. The color-coding on the perimeter of gray boxes defines observation classes within the CDISC BRIDG model (not discussed). Yellow boxes correspond to the CDISC SDTM domain (data set) where the concepts described reside. (C) Concept map depicting PET scans. Molecular imaging biomarkers in AD V2.0 standards include radiotracers for FDG-PET and amyloid β. PET imaging parameters that are critical to capture include metabolic status/fasting of patient, reference region, and scanner type among others. Abbreviations: AG, procedure agents domain; BE, biospecimen events domain; BRIDG, biomedical research information domain grid; CDISC, Clinical Data Interchange Standards Consortium; CSF, cerebrospinal fluid; CT, computed tomography; FDG-PET, fluorodeoxyglucose–positron emission tomography; LB, laboratory test results domain; MO, morphology domain; MRI, magnetic resonance imaging; NV, nervous system findings domain; PR, procedures domain; SDTM, Study Data Tabulation Model; SUPPMO, supplemental morphology domain; SUPPNV, supplemental nervous systems findings domain.

Concept modeling involves iterative discussions between clinical subject-matter experts and data modeling experts to parse the various concepts and relevant qualifiers that describe the pertinent information and data generated within a given research topic. The resulting “concept maps” (examples shown in panels A, B, and C) are the first stage in the development of data models that describe how individual data elements relate to each other so that the resulting data model accounts for and preserves these relationships. (A) A concept map depicting CSF sample processing and the parameters that can impact the results. The color-coding on the perimeter of gray boxes defines observation classes within the CDISC BRIDG model (not discussed). Yellow boxes correspond to the CDISC SDTM domain (data set) where the concepts described reside in SDTM. (B) Concept map depicting MRI for the acquisition of volumetric biomarkers. To fully represent an MRI scan data should be collected regarding subject characteristics, whether contrast enhancement was used, scanner-specific properties, and software properties that determine the anatomic location scanned, pulse-sequence data, and the analysis algorithm to name a few. The color-coding on the perimeter of gray boxes defines observation classes within the CDISC BRIDG model (not discussed). Yellow boxes correspond to the CDISC SDTM domain (data set) where the concepts described reside. (C) Concept map depicting PET scans. Molecular imaging biomarkers in AD V2.0 standards include radiotracers for FDG-PET and amyloid β. PET imaging parameters that are critical to capture include metabolic status/fasting of patient, reference region, and scanner type among others. Abbreviations: AG, procedure agents domain; BE, biospecimen events domain; BRIDG, biomedical research information domain grid; CDISC, Clinical Data Interchange Standards Consortium; CSF, cerebrospinal fluid; CT, computed tomography; FDG-PET, fluorodeoxyglucose–positron emission tomography; LB, laboratory test results domain; MO, morphology domain; MRI, magnetic resonance imaging; NV, nervous system findings domain; PR, procedures domain; SDTM, Study Data Tabulation Model; SUPPMO, supplemental morphology domain; SUPPNV, supplemental nervous systems findings domain. The AD CDISC V2.0 standard represents broad consensus from the external scientific community. Once the draft therapeutic guide for AD was compiled, it was sent out for a focused review to ensure that the concepts were represented accurately and conformed to rules of the standard. The CDISC standards development team responded to all reviewer comments received and made any necessary changes in an iterative way. This comment resolution process culminated in the first of two reviews by the CDISC Standards Review Council, which is tasked with ensuring the quality of all CDISC TAUGs. In the later stages of the CDISC standards development process, the draft TAUG was released for a broader public review, during which the global user community was invited to make comments and request changes. The Standards Review Council reviewed all comments and addressed each one to achieve the best standard. Once approved, the new domain was made available for public use. The consensus process that was followed and public availability of the CDISC standard is aimed at encouraging widespread agreement and future implementation.

Results

The creation of AD CDISC standards in SDTM format served as the basis for the AD-specific data standards user guide. A number of the included concepts are applicable across different diseases, such as the approach to handling imaging data. In addition to defining a standard format for representing data from common assessments (i.e., medical history), the standards describe how to record a number of factors that are specific for AD trials and may influence the outcome of analyses.

Data standards are critical to interpreting integrated study data

On completion of V1.0 of the AD TAUG, the AD CDISC standards were prioritized to effectively integrate the AD placebo data from multiple distinct AD trials in the unified AD C-Path Online Data Repository database [17]. The CAMD AD database, which serves as a single integrated database, consists of item-level, patient-level anonymized data from the placebo arm of 24 clinical trials contributed by nine industry sponsors and the Alzheimer's Disease Cooperative Study Group. Development of the integrated database required the remapping of legacy clinical trial data to the CDISC AD standard. The common outcome measure across the different AD trials was Alzheimer's Disease Assessment Scale–Cognitive subscale (ADAS-Cog). Importantly, it was discovered when integrating the data to the AD CDISC standard that the ADAS-Cog instrument was not represented the same in each study. Table 2 illustrates the unique aspects of each sponsor's trial according to the ADAS-Cog measures. The AD CDISC standard served to highlight the differences in ADAS-Cog item level measures across different studies and was used to align the outcome measures across distinct trials in the development of the AD CAMD database.
Table 2

Comparison of different study sponsors' implementation of ADAS-Cog

ItemStudy 1Study 2Study 3Study 4Study 5Study 6Study 7
1Word RecallWord RecallWord RecallWord RecallWord RecallWord RecallWord Recall
2CommandsName Obj./FingersName Obj./FingersCommandsName Obj./FingersName Obj./FingersName Obj./Fingers
3Constr. PraxisDelayed RecallCommandsConstr. PraxisCommandsCommandsCommands
4Delayed RecallCommandsConstr. PraxisDelayed RecallDelayed RecallConstr. PraxisConstr. Praxis
5Name Obj./FingersConstr. PraxisIdea. PraxisName Obj./FingersConstr. PraxisIdea. PraxisIdea. Praxis
6Idea. PraxisIdea. PraxisOrientationIdea. PraxisIdea. PraxisOrientationOrientation
7OrientationOrientationWord Recog.OrientationOrientationWord Recog.Word Recog.
8Word Recog.Word Recog.Remem. Instr.Word Recog.Word Recog.Remem. Instr.Spoken Lang. Abil.
9Remem. Instr.Remem. Instr.Spoken Lang. Abil.Remem. Instr.Remem. Instr.Spoken Lang. Abil.Comprehension
10ComprehensionSpoken Lang. Abil.Word Finding Dif.Spoken Lang. Abil.Spoken Lang. Abil.Word Finding Dif.Word Finding Dif.
11Word Finding Dif.Word Finding Dif.ComprehensionDiff. Spont. SpeechWord Finding Dif.ComprehensionRemem. Instr.
12Spoken Lang. Abil.ComprehensionConcentrationComprehensionComprehensionConcentration
13Number CancelConcentrationConcentrationConcentration

Abbreviations: ADAS-Cog, Alzheimer's Disease Assessment Scale–Cognitive subscale; Constr. Praxis, constructional praxis; Diff. Spont. Speech, difficulty with spontaneous speech; Idea. Praxis, ideational praxis; Name Obj./Fingers, naming objects and fingers; Number Cancel., number cancellation; Remem. Instr., remembering instructions; Spoken Lang. Abil., spoken language ability; Word Finding Dif., word finding difficulty; Word Recog., word recognition.

NOTE. Seven Clinical Report Forms (CRFs) from seven individual sponsors were provided to the Coalition Against Major Diseases team for analysis. Each study originates from distinctive sponsors. All points of contact for the different data sources could not confirm with certainty that the order of the ADAS-Cog items in the CRFs reflected the order in which they were administered in the clinical trials. The order in which ADAS-Cog items were reported across the seven CRFs varied for a total number of items ranging from two to 10. Four CRFs reported the trials as having used the 13-item ADAS-Cog scale, two CRFs reported using 12 items of the 13-item ADAS-Cog, and one CRF reported the use of the 11-item ADAS-Cog scale. All CRFs reported the administration of word recall first, and no CRF reported administering word recognition last (which is recommended in the ADAS-Cog administration instructions); three CRFs reported administering word recognition as the seventh item/cognitive test, and four CRFs reported administering word recognition as the eighth item/cognitive test.

Comparison of different study sponsors' implementation of ADAS-Cog Abbreviations: ADAS-Cog, Alzheimer's Disease Assessment Scale–Cognitive subscale; Constr. Praxis, constructional praxis; Diff. Spont. Speech, difficulty with spontaneous speech; Idea. Praxis, ideational praxis; Name Obj./Fingers, naming objects and fingers; Number Cancel., number cancellation; Remem. Instr., remembering instructions; Spoken Lang. Abil., spoken language ability; Word Finding Dif., word finding difficulty; Word Recog., word recognition. NOTE. Seven Clinical Report Forms (CRFs) from seven individual sponsors were provided to the Coalition Against Major Diseases team for analysis. Each study originates from distinctive sponsors. All points of contact for the different data sources could not confirm with certainty that the order of the ADAS-Cog items in the CRFs reflected the order in which they were administered in the clinical trials. The order in which ADAS-Cog items were reported across the seven CRFs varied for a total number of items ranging from two to 10. Four CRFs reported the trials as having used the 13-item ADAS-Cog scale, two CRFs reported using 12 items of the 13-item ADAS-Cog, and one CRF reported the use of the 11-item ADAS-Cog scale. All CRFs reported the administration of word recall first, and no CRF reported administering word recognition last (which is recommended in the ADAS-Cog administration instructions); three CRFs reported administering word recognition as the seventh item/cognitive test, and four CRFs reported administering word recognition as the eighth item/cognitive test.

V1.0 as the cornerstone to V2.0

V1.0 of the AD TAUG was published in 2011 and focused on standards from mild-to-moderate stages of AD, the target population for most therapeutic trials that had been carried out historically [18]. Concepts covered in V1.0 included items from the ADAS-Cog, apolipoprotein E (APOE) genotype, and laboratory tests for cerebrospinal fluid (CSF), amyloid β (Aβ), and tau biofluid protein biomarkers. The process required development of multiple new SDTM domains as part of the standards development project, definition of new controlled terminology such as for the various APOE haplotypes, and the rules associated with organizing and relating the data in SDTM. With the advent of diagnostic criteria for early AD [19], [20] and the initiation of clinical trials in earlier stages of the disease spectrum, there was a necessity to update the AD CDISC standards. The primary focus of the revised clinical data standards was on AD biomarkers, which have posed challenges for sponsors in terms of standardization [21], [22], [23]. V2.0, published in 2013, expanded on V1.0 to include neuroimaging biomarkers and an extended set of sample handling for CSF. Biomarker acquisition parameters were a key focus in expanding the relevance of the TAUG to earlier stages of AD, namely studies of mild cognitive impairment (MCI). Clinical outcome assessments were also added to V2.0 and include Clinical Dementia Rating scale, Functional Assessment Questionnaire, Disability Assessment for Dementia, Alzheimer's Disease Cooperative Study–Activities of Daily Living–MCI, Neuropsychiatric Inventory, Clinical Global Impression, and Geriatric Depression Scale. Table 3 highlights the concepts and domains included in the AD TAUG V2.0.
Table 3

Concepts covered by the Alzheimer's CDISC User Guide, V2.0

ConceptComments
APOE genotypeShows how to represent genotype as one record per allele
Family history of AD
Volumetric MRITotal brain volume, hippocampus volume (left and right), ventricular space volume, and BBSI
PET, PET-CT (FDG, Florbetapir, PiB)SUVR, scan parameters, radiotracers, and procedure details (fasting status, and so forth)
CSF biomarkers and samplingProcedure details (location of puncture, time of day, needle gauge, and so forth.), storage tube composition, freeze thaw cycles, Aβ, total tau, and phosphor-tau measures
Clinical outcome assessment instruments
 ADAS-CogAlzheimer's Disease Assessment Scale–Cognitive subscale. Includes item- and subitem-level scores
 MMSEMini–Mental State Examination. Will be made available to licensees through the copyright-holder's website
 CDRClinical Dementia Rating. Standard specifications developed. Negotiations ongoing with copyright holder on how to publish these specifications
 FAQFunctional Assessment Questionnaire
 MHIS-NACCModified Hachinski Ischemic Scale—NACC Version
 DADDisability Assessment for Dementia
 ADCS-ADL MCIAlzheimer's Disease Cooperative Study–Activities of Daily Living–MCI
 NPINeuropsychiatric Inventory

Abbreviations: AD, Alzheimer's disease; APOE, apolipoprotein E; BBSI, brain boundary shift integral; CSF, cerebrospinal fluid; CT, computed tomography; MCI, mild cognitive impairment; MRI, magnetic resonance imaging; NACC, National Alzheimer's Coordinating Center version; PET, positron emission tomography; PiB, Pittsburgh compound B; SUVR, standard uptake value ratio.

Concepts covered by the Alzheimer's CDISC User Guide, V2.0 Abbreviations: AD, Alzheimer's disease; APOE, apolipoprotein E; BBSI, brain boundary shift integral; CSF, cerebrospinal fluid; CT, computed tomography; MCI, mild cognitive impairment; MRI, magnetic resonance imaging; NACC, National Alzheimer's Coordinating Center version; PET, positron emission tomography; PiB, Pittsburgh compound B; SUVR, standard uptake value ratio.

Addition of specific biomarker standards

Protein biomarkers measured in CSF have been a key focus for AD researchers and are used frequently in AD randomized controlled clinical trials [24]. Aβ, total tau, and phospho-tau show the most promise as prognostic biomarkers [25], [26] and have been qualified by the European Medicines Agency for use in clinical trials at the predementia stage [27], [28]. A large number of factors contribute to the measure of each protein and there has been increasing recognition of the importance of a multitude of parameters involved in collection and sample handling [29]. Such parameters are relevant across multiple central nervous system disease states, which has led to the development of consensus guidelines [30]. CSF biomarker values can vary according to a multitude of acquisition and processing parameters, including site of the lumbar puncture, the tube type used for sample storage, and the analytical measurement technique [31]. Such biomarker variables are oftentimes not reported in peer-reviewed publications or clinical protocols. The parameters included in the CSF concept map are known to impact the predictive accuracy of AD CSF analytes in identifying early AD subjects who are more likely to progress to AD dementia [32], [33]. Fig. 2A shows which parameters are relevant to contributing to the final biomarker analyte value and should therefore be controlled for and documented at each step along the way. Standardization of neuroimaging biomarkers is also a focus of the AD CDISC standards. Neuroimaging concepts were defined to cover multiple modalities including fluorodeoxyglucose–positron emission tomography (PET), structural magnetic resonance imaging, and PET neuroimaging. Fig. 2A and B shows the concept maps used to drive the CDISC standards development for neuroimaging in AD. Table 3 outlines the concepts and parameters that are included in the AD V2.0 TAUG. Developers identified ways to represent a variety of imaging parameters including PET scan tracer administration, scanner type, radiolabeled tracers, software type, scanner-specific features, and reference region in addition to fundamental parameters at collection time (time of day, fasting level, and so forth). Many of the factors captured in the concepts are defined in protocols such as ADNI, yet not predefined or even identified as important to capture in other studies.

Discussion

Clinical trials in AD have been conducted with a diversity of approaches in the way in which data are acquired and reported. This confounds cross-comparison between studies and makes it difficult to pool and share data for integrated analyses of multiple trials. Efficiency can be gained through the use of consensus data standards. The current V2.0 AD CDISC standards encompass outcome measures and biomarkers that are relevant to AD clinical trials of drugs targeting AD dementia and predementia stages including mild AD and MCI. ADNI set out early ambitious goals to meet one of its primary objectives of improving the detection of AD at the earliest stages through the use of biomarkers. The success of ADNI can be attributed to the early agreement that defined data collection standards would be implemented at all sites and all data would be shared with researchers around the world [10], [34], [35]. ADNI protocols served as the foundation for the development of the AD CDISC standards. The CDISC TAUG for AD V1.0 enabled CAMD to develop the first standardized database of AD clinical trials [14]. This database, available to qualified researchers, is being used to provide novel insights into AD and served as the foundation for the development of the first-ever regulatory-endorsed clinical trial simulation tool (for mild and moderate AD) [36]. This tool, now being used by academics and industry, could not have been developed based on meta-analyses of disparate data. Although it was assumed that ADAS-Cog represents a standardized clinical outcome, particularly given its widespread use, it was clear to the CAMD developers that the item-level data varied significantly across the different trials. This included variations in total number of items (11-, 12-, and 13-item versions), item order, and word lists. Such differences posed significant challenges for analysis. By remapping the data to CDISC standards, all 11 common ADAS-Cog items are aligned across studies, whereas still retaining an indication of their original implementation. CDISC standards are evolving entities. Revisions of the standards are a mechanism to integrate new scientific advances. The evolution of V1.0 to V2.0 of the AD CDISC standard provides a prime example of this. It is anticipated that future versions of the AD CDISC standard (V3.0) will focus on prevention trials, particularly given that treatment at presymptomatic disease states represent a focus of ongoing and prospective clinical trials [1]. Future revisions may include elements related to novel outcome measures [37], [38] and biomarkers such as functional magnetic resonance imaging used to assess connectivity and cognitive reserve [39].

Precompetitive initiatives

Collaborative networks have become a mainstay in AD based on the success of flagship public-private partnerships such as ADNI and CAMD. Presently there are >30 consortia with a focus on AD [11] and many new initiatives being launched in other disease areas. Precompetitive forums like the Collaboration for Alzheimer's Prevention provide an effective platform to champion the implementation of AD CDISC standards [40], [41]. The success of these consortia depends on the ability to easily analyze data available from AD trials. International initiatives such as the European Medical Information Framework, the European Prevention of Alzheimer's Dementia, the Alzheimer's Prevention Initiative, and the Global Alzheimer Platform have all recognized the critical value of data standards and have committed to their implementation so that data from these efforts can be integrated. In addition, the Global Alzheimer's Association Interactive Network is “advancing research into the causes, prevention and treatment of Alzheimer's and other neurodegenerative diseases through a global cooperative of sharing, investigation and discovery” (http://www.gaain.org) [6], [42].

Focus on biomarkers

AD biomarkers that have been a focus of standardization include CSF analytes [22], [31], [43], plasma proteins [44], [45], and neuroimaging parameters [46], [47]. Given that >70% of the variability in biofluid measurements in blood is attributable to preanalytical factors [44], it is critical to standardize sample collection procedures. CDISC data standards should not be confused with protocol standards for biomarker acquisition. However, having a set of consensus-based data standards that capture the concepts relevant to these protocols serves to highlight the importance of acquisition parameters and provides a standardized way of representing data collected according to a given protocol. This allows analysts to quickly filter subsets of aggregated data that were collected in a similar fashion. Finally, there is a need to consider developing CDISC standards for nascent promising biomarkers including novel imaging methodologies, metabolomics, proteomics, electroencephalogram, and even digital health platform technologies. This will reduce the time for validation and encourage data integration across studies. It is anticipated that prospective use of CDISC standards will expedite regulatory endorsement of biomarkers in the future for related central nervous system conditions and provide a path for the development of future standards [43].

Regulatory implications of data standards

Regulatory agencies have encouraged consistent data collection and aggregation across multiple disease areas [48], [49]. Since December 2016, FDA and Japan's Pharmaceuticals and Medical Devices Agency require the use of CDISC data standards for all NDA and certain investigational new drug submissions [50]. In recognition of the challenges posed by the sharing and aggregation of large data sets, regulatory agencies have launched the Letter of Support Initiative to highlight promising biomarkers, encourage data sharing, and stimulate additional studies [51], [52]. Two of the first three letters of support issued for clinical biomarkers were issued to CAMD and focused on AD for exploratory prognostic CSF biomarkers (Aβ, tau, and phospho-tau) and the use of low baseline volume of the hippocampus as a biomarker for enrichment in trials at early stages of AD [53]. Notably, these letters, signed by FDA leadership, clearly recommended the use of AD CDISC standards in future AD trials.

Conclusions

The AD CDISC data standard holds the promise of implementing a reproducible research framework that spans from first studies in man through the approval of new medicines. The use of CDISC standards aids in the understanding of the course of disease progression, improves the ability to detect statistically significant signals, and maximizes our ability to learn from both successes and failures. CDISC standards can be leveraged to enable the extraction of knowledge from ongoing and future AD trials. Table 4 highlights the key recommendations for the efficient execution and the development of drug development tools that accelerate the delivery of novel AD treatments. The use of the AD data standard will permit complex data modeling of disease progression from asymptomatic to dementia stages of this devastating condition in urgent need of effective intervention.
Table 4

Future recommendations to enable efficient execution of novel AD treatments

Prospective use of AD CDISC biomarker and clinical data standards in ongoing and prospective clinical trials of subjects with AD

Continued engagement with submission of data and methodology to regulatory agencies in alignment with AD CDISC standards

Expanded alliances of all stakeholder groups in implementing the use of AD CDISC standards, particularly precompetitive consortium working on discovery, validation, and regulatory endorsement of AD biomarkers. Enhanced focus on preanalytical factors in all biomarker studies

Initiate data standards development for the aggregation of biosensor performance measures (both wearable devices and remote monitoring) that are increasingly being integrated into both observational and clinical trials designs

Full engagement and active participation of all stakeholders and sponsors conducting AD clinical trials and biomarker discovery research, such as diagnostic companies and manufacturers, in embracing the use of AD CDISC standards and providing input on future versions of the standards

Development of open-source data handling and analysis tools (based on the standards) that provide incentive and added value to users and that facilitate the use of the common data through capture, analysis, submission, regulatory review, and approvals

Increased incentives to comply with CDISC standards (RFAs, funding, industry incentives; e.g., TBI seed grant RFA)

Development of translational standards in the area of biomarkers (biomarkers that enable decision making from animals to clinic) (i.e., preclinical common data elements [CDEs] for TBI, Smith et al., 2015 [54])

Abbreviations: AD, Alzheimer's disease; CDE, common data element; CDISC, Clinical Data Interchange Standards Consortium; RFA, request for application; TBI, traumatic brian injury.

Systematic review: The first therapeutic area user guide for AD CDISC standards had not previously integrated biomarkers. Given the growing importance of biomarker assays to understand disease progression, and the requirement of the FDA to have trials submitted using CDISC standards, we initiated an effort towards developing global consensus CDISC data standards for key AD biomarkers. Interpretation: AD data standards promote the acceleration of our understanding of AD. They provide a reproducible research framework that spans from first studies in man though the launch of new medicines. CDISC standards increase our ability to improve our ability to detect signals in new compounds, and maximize our ability to share learnings from both successes and failures. Future directions: Future use of the AD data standards (v2.0) will permit complex data modeling of disease progression from asymptomatic to dementia stages of this devastating disease, and improve the efficiency of future regulatory reviews. Future recommendations to enable efficient execution of novel AD treatments Prospective use of AD CDISC biomarker and clinical data standards in ongoing and prospective clinical trials of subjects with AD Continued engagement with submission of data and methodology to regulatory agencies in alignment with AD CDISC standards Expanded alliances of all stakeholder groups in implementing the use of AD CDISC standards, particularly precompetitive consortium working on discovery, validation, and regulatory endorsement of AD biomarkers. Enhanced focus on preanalytical factors in all biomarker studies Initiate data standards development for the aggregation of biosensor performance measures (both wearable devices and remote monitoring) that are increasingly being integrated into both observational and clinical trials designs Full engagement and active participation of all stakeholders and sponsors conducting AD clinical trials and biomarker discovery research, such as diagnostic companies and manufacturers, in embracing the use of AD CDISC standards and providing input on future versions of the standards Development of open-source data handling and analysis tools (based on the standards) that provide incentive and added value to users and that facilitate the use of the common data through capture, analysis, submission, regulatory review, and approvals Increased incentives to comply with CDISC standards (RFAs, funding, industry incentives; e.g., TBI seed grant RFA) Development of translational standards in the area of biomarkers (biomarkers that enable decision making from animals to clinic) (i.e., preclinical common data elements [CDEs] for TBI, Smith et al., 2015 [54]) Abbreviations: AD, Alzheimer's disease; CDE, common data element; CDISC, Clinical Data Interchange Standards Consortium; RFA, request for application; TBI, traumatic brian injury.
  46 in total

1.  CSF biomarkers for Alzheimer's disease: current utility and potential future use.

Authors:  David M Holtzman
Journal:  Neurobiol Aging       Date:  2011-12       Impact factor: 4.673

Review 2.  The FDA critical path initiative and its influence on new drug development.

Authors:  Janet Woodcock; Raymond Woosley
Journal:  Annu Rev Med       Date:  2008       Impact factor: 13.739

3.  Advancing research diagnostic criteria for Alzheimer's disease: the IWG-2 criteria.

Authors:  Bruno Dubois; Howard H Feldman; Claudia Jacova; Harald Hampel; José Luis Molinuevo; Kaj Blennow; Steven T DeKosky; Serge Gauthier; Dennis Selkoe; Randall Bateman; Stefano Cappa; Sebastian Crutch; Sebastiaan Engelborghs; Giovanni B Frisoni; Nick C Fox; Douglas Galasko; Marie-Odile Habert; Gregory A Jicha; Agneta Nordberg; Florence Pasquier; Gil Rabinovici; Philippe Robert; Christopher Rowe; Stephen Salloway; Marie Sarazin; Stéphane Epelbaum; Leonardo C de Souza; Bruno Vellas; Pieter J Visser; Lon Schneider; Yaakov Stern; Philip Scheltens; Jeffrey L Cummings
Journal:  Lancet Neurol       Date:  2014-06       Impact factor: 44.182

4.  The EADC-ADNI Harmonized Protocol for manual hippocampal segmentation on magnetic resonance: evidence of validity.

Authors:  Giovanni B Frisoni; Clifford R Jack; Martina Bocchetta; Corinna Bauer; Kristian S Frederiksen; Yawu Liu; Gregory Preboske; Tim Swihart; Melanie Blair; Enrica Cavedo; Michel J Grothe; Mariangela Lanfredi; Oliver Martinez; Masami Nishikawa; Marileen Portegies; Travis Stoub; Chadwich Ward; Liana G Apostolova; Rossana Ganzola; Dominik Wolf; Frederik Barkhof; George Bartzokis; Charles DeCarli; John G Csernansky; Leyla deToledo-Morrell; Mirjam I Geerlings; Jeffrey Kaye; Ronald J Killiany; Stephane Lehéricy; Hiroshi Matsuda; John O'Brien; Lisa C Silbert; Philip Scheltens; Hilkka Soininen; Stefan Teipel; Gunhild Waldemar; Andreas Fellgiebel; Josephine Barnes; Michael Firbank; Lotte Gerritsen; Wouter Henneman; Nikolai Malykhin; Jens C Pruessner; Lei Wang; Craig Watson; Henrike Wolf; Mony deLeon; Johannes Pantel; Clarissa Ferrari; Paolo Bosco; Patrizio Pasqualetti; Simon Duchesne; Henri Duvernoy; Marina Boccardi
Journal:  Alzheimers Dement       Date:  2014-09-27       Impact factor: 21.566

Review 5.  Pre-analytical and analytical factors influencing Alzheimer's disease cerebrospinal fluid biomarker variability.

Authors:  Anthony Fourier; Erik Portelius; Henrik Zetterberg; Kaj Blennow; Isabelle Quadrio; Armand Perret-Liaudet
Journal:  Clin Chim Acta       Date:  2015-06-30       Impact factor: 3.786

Review 6.  The evolution of preclinical Alzheimer's disease: implications for prevention trials.

Authors:  Reisa Sperling; Elizabeth Mormino; Keith Johnson
Journal:  Neuron       Date:  2014-11-05       Impact factor: 17.173

Review 7.  The impact of the Alzheimer's Disease Neuroimaging Initiative 2: What role do public-private partnerships have in pushing the boundaries of clinical and basic science research on Alzheimer's disease?

Authors:  Dorothy M Jones-Davis; Neil Buckholtz
Journal:  Alzheimers Dement       Date:  2015-07       Impact factor: 21.566

8.  Development of a unified clinical trial database for Alzheimer's disease.

Authors:  Jon Neville; Steve Kopko; Steve Broadbent; Enrique Avilés; Robert Stafford; Christine M Solinsky; Lisa J Bain; Martin Cisneroz; Klaus Romero; Diane Stephenson
Journal:  Alzheimers Dement       Date:  2015-02-09       Impact factor: 21.566

Review 9.  The Alzheimer's Disease Neuroimaging Initiative: a review of papers published since its inception.

Authors:  Michael W Weiner; Dallas P Veitch; Paul S Aisen; Laurel A Beckett; Nigel J Cairns; Robert C Green; Danielle Harvey; Clifford R Jack; William Jagust; Enchi Liu; John C Morris; Ronald C Petersen; Andrew J Saykin; Mark E Schmidt; Leslie Shaw; Li Shen; Judith A Siuciak; Holly Soares; Arthur W Toga; John Q Trojanowski
Journal:  Alzheimers Dement       Date:  2013-08-07       Impact factor: 21.566

10.  Diagnostic Impact of Cerebrospinal Fluid Biomarker (Pre-)Analytical Variability in Alzheimer's Disease.

Authors:  Ellis Niemantsverdriet; Joery Goossens; Hanne Struyfs; Jean-Jacques Martin; Johan Goeman; Peter Paul De Deyn; Hugo Vanderstichele; Sebastiaan Engelborghs
Journal:  J Alzheimers Dis       Date:  2016       Impact factor: 4.472

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1.  Identifying Sleep-Related Factors Associated with Cognitive Function in a Hispanics/Latinos Cohort: A Dual Random Forest Approach.

Authors:  Li Xiaojin; Cui Licong; Wang Fei; Paul E Schulz; Guo-Qiang Zhang
Journal:  AMIA Annu Symp Proc       Date:  2022-02-21

2.  ADataViewer: exploring semantically harmonized Alzheimer's disease cohort datasets.

Authors:  Yasamin Salimi; Daniel Domingo-Fernández; Carlos Bobis-Álvarez; Martin Hofmann-Apitius; Colin Birkenbihl
Journal:  Alzheimers Res Ther       Date:  2022-05-21       Impact factor: 8.823

Review 3.  New Frontiers in Parkinson's Disease: From Genetics to the Clinic.

Authors:  Lamya S Shihabuddin; Patrik Brundin; J Timothy Greenamyre; Diane Stephenson; S Pablo Sardi
Journal:  J Neurosci       Date:  2018-10-31       Impact factor: 6.167

4.  New directions in clinical trials for frontotemporal lobar degeneration: Methods and outcome measures.

Authors:  Adam L Boxer; Michael Gold; Howard Feldman; Bradley F Boeve; Susan L-J Dickinson; Howard Fillit; Carole Ho; Robert Paul; Rodney Pearlman; Margaret Sutherland; Ajay Verma; Stephen P Arneric; Brian M Alexander; Bradford C Dickerson; Earl Ray Dorsey; Murray Grossman; Edward D Huey; Michael C Irizarry; William J Marks; Mario Masellis; Frances McFarland; Debra Niehoff; Chiadi U Onyike; Sabrina Paganoni; Michael A Panzara; Kenneth Rockwood; Jonathan D Rohrer; Howard Rosen; Robert N Schuck; Holly D Soares; Nadine Tatton
Journal:  Alzheimers Dement       Date:  2020-01-06       Impact factor: 21.566

5.  Standardized Data Structures in Rare Diseases: CDISC User Guides for Duchenne Muscular Dystrophy and Huntington's Disease.

Authors:  Ariana P Mullin; Diane Corey; Emily C Turner; Richard Liwski; Daniel Olson; Jackson Burton; Sudhir Sivakumaran; Lynn D Hudson; Klaus Romero; Diane T Stephenson; Jane Larkindale
Journal:  Clin Transl Sci       Date:  2020-08-25       Impact factor: 4.689

6.  Evaluating the Alzheimer's disease data landscape.

Authors:  Colin Birkenbihl; Yasamin Salimi; Daniel Domingo-Fernándéz; Simon Lovestone; Holger Fröhlich; Martin Hofmann-Apitius
Journal:  Alzheimers Dement (N Y)       Date:  2020-12-16
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