Literature DB >> 29062976

Recent progress and open challenges in modeling p53 dynamics in single cells.

Eric Batchelor1, Alexander Loewer2.   

Abstract

In mammalian cells, the tumor suppressor p53 is activated upon a variety of cellular stresses and ensures an appropriate response ranging from arrest and repair to the induction of senescence and apoptosis. Quantitative measurements in individual living cells showed stimulus-dependent dynamics of p53 accumulation upon stress induction. Due to the complexity of the underlying biochemical interactions, mathematical models were indispensable for understanding the topology of the network regulating p53 dynamics. Recent work provides furhter insights into the causes of heterogeneous responses in individual cells, the rewiring of the network in response to different inputs and the role of the downstream processes in determining the cellular fate upon stress.

Entities:  

Year:  2017        PMID: 29062976      PMCID: PMC5650191          DOI: 10.1016/j.coisb.2017.04.007

Source DB:  PubMed          Journal:  Curr Opin Syst Biol        ISSN: 2452-3100


  47 in total

1.  Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delays.

Authors:  Nicholas A M Monk
Journal:  Curr Biol       Date:  2003-08-19       Impact factor: 10.834

2.  p53-Mdm2 loop controlled by a balance of its feedback strength and effective dampening using ATM and delayed feedback.

Authors:  J Wagner; L Ma; J J Rice; W Hu; A J Levine; G A Stolovitzky
Journal:  Syst Biol (Stevenage)       Date:  2005-09

Review 3.  A complex barcode underlies the heterogeneous response of p53 to stress.

Authors:  Fiona Murray-Zmijewski; Elizabeth A Slee; Xin Lu
Journal:  Nat Rev Mol Cell Biol       Date:  2008-09       Impact factor: 94.444

4.  Distinct mechanisms act in concert to mediate cell cycle arrest.

Authors:  Jared E Toettcher; Alexander Loewer; Gerard J Ostheimer; Michael B Yaffe; Bruce Tidor; Galit Lahav
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-12       Impact factor: 11.205

5.  Disorder and residual helicity alter p53-Mdm2 binding affinity and signaling in cells.

Authors:  Wade Borcherds; François-Xavier Theillet; Andrea Katzer; Ana Finzel; Katie M Mishall; Anne T Powell; Hongwei Wu; Wanda Manieri; Christoph Dieterich; Philipp Selenko; Alexander Loewer; Gary W Daughdrill
Journal:  Nat Chem Biol       Date:  2014-11-02       Impact factor: 15.040

6.  A plausible model for the digital response of p53 to DNA damage.

Authors:  Lan Ma; John Wagner; John Jeremy Rice; Wenwei Hu; Arnold J Levine; Gustavo A Stolovitzky
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-26       Impact factor: 11.205

7.  Rescue of embryonic lethality in Mdm2-deficient mice by absence of p53.

Authors:  S N Jones; A E Roe; L A Donehower; A Bradley
Journal:  Nature       Date:  1995-11-09       Impact factor: 49.962

8.  The ubiquitin ligase COP1 is a critical negative regulator of p53.

Authors:  David Dornan; Ingrid Wertz; Harumi Shimizu; David Arnott; Gretchen D Frantz; Patrick Dowd; Karen O'Rourke; Hartmut Koeppen; Vishva M Dixit
Journal:  Nature       Date:  2004-04-21       Impact factor: 49.962

9.  Oscillations and variability in the p53 system.

Authors:  Naama Geva-Zatorsky; Nitzan Rosenfeld; Shalev Itzkovitz; Ron Milo; Alex Sigal; Erez Dekel; Talia Yarnitzky; Yuvalal Liron; Paz Polak; Galit Lahav; Uri Alon
Journal:  Mol Syst Biol       Date:  2006-06-13       Impact factor: 11.429

10.  DNA damage strength modulates a bimodal switch of p53 dynamics for cell-fate control.

Authors:  Xi Chen; Jia Chen; Siting Gan; Huaji Guan; Yuan Zhou; Qi Ouyang; Jue Shi
Journal:  BMC Biol       Date:  2013-06-21       Impact factor: 7.431

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  7 in total

1.  A systematic approach to decipher crosstalk in the p53 signaling pathway using single cell dynamics.

Authors:  Fabian Konrath; Anna Mittermeier; Elena Cristiano; Jana Wolf; Alexander Loewer
Journal:  PLoS Comput Biol       Date:  2020-06-26       Impact factor: 4.475

2.  Frequency switching between oscillatory homeostats and the regulation of p53.

Authors:  Peter Ruoff; Nobuaki Nishiyama
Journal:  PLoS One       Date:  2020-05-20       Impact factor: 3.240

Review 3.  Mathematical Modeling of p53 Pathways.

Authors:  Eunjung Kim; Jae-Young Kim; Joo-Yong Lee
Journal:  Int J Mol Sci       Date:  2019-10-18       Impact factor: 5.923

4.  Apoptotic mechanism activated by blue light and cisplatinum in cutaneous squamous cell carcinoma cells.

Authors:  Maria Fiorella Tartaglione; María Eléxpuru Zabaleta; Raffaella Lazzarini; Francesco Piva; Elena Marinelli Busilacchi; Antonella Poloni; Caterina Ledda; Venerando Rapisarda; Lory Santarelli; Massimo Bracci
Journal:  Int J Mol Med       Date:  2021-02-12       Impact factor: 4.101

Review 5.  Cellular Responses to Platinum-Based Anticancer Drugs and UVC: Role of p53 and Implications for Cancer Therapy.

Authors:  David Murray; Razmik Mirzayans
Journal:  Int J Mol Sci       Date:  2020-08-11       Impact factor: 5.923

6.  Viability Assessment Following Anticancer Treatment Requires Single-Cell Visualization.

Authors:  Razmik Mirzayans; Bonnie Andrais; David Murray
Journal:  Cancers (Basel)       Date:  2018-08-01       Impact factor: 6.639

7.  Sliding mode controller-observer pair for p53 pathway.

Authors:  Muhammad Rizwan Azam; Vadim I Utkin; Ali Arshad Uppal; Aamer Iqbal Bhatti
Journal:  IET Syst Biol       Date:  2019-08       Impact factor: 1.615

  7 in total

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