P Kharazmi1, S Kalia2,3, H Lui2,3, Z J Wang4, T K Lee1,2,3. 1. Biomedical Engineering Program, University of British Columbia, Vancouver, BC, Canada. 2. Department of Dermatology and Skin Science, University of British Columbia, Vancouver, BC, Canada. 3. Departments of Cancer Control Research and Integrative Oncology, British Columbia Cancer Agency, Vancouver, BC, Canada. 4. Department of Electrical and Computer Engineering, University of British Columbia, Vancouver, BC, Canada.
Abstract
BACKGROUND: Basal cell carcinoma (BCC) is the most common skin cancer, which is highly damaging in its advanced stages. Computer-aided techniques provide a feasible option for early detection of BCC. However, automated BCC detection techniques immensely rely on handcrafting high-level precise features. Such features are not only computationally complex to design but can also represent a very limited aspect of the lesion characteristics. This paper proposes an automated BCC detection technique that directly learns the features from image data, eliminating the need for handcrafted feature design. METHODS: The proposed method is composed of 2 parts. First, an unsupervised feature learning framework is proposed which attempts to learn hidden characteristics of the data including vascular patterns directly from the images. This is done through the design of a sparse autoencoder (SAE). After the unsupervised learning, we treat each of the learned kernel weights of the SAE as a filter. Convolving each filter with the lesion image yields a feature map. Feature maps are condensed to reduce the dimensionality and are further integrated with patient profile information. The overall features are then fed into a softmax classifier for BCC classification. RESULTS: On a set of 1199 BCC images, the proposed framework achieved an area under the curve of 91.1%, while the visualization of learned features confirmed meaningful clinical interpretation of the features. CONCLUSION: The proposed framework provides a non-invasive fast BCC detection tool that incorporates both dermoscopic lesional features and clinical patient information, without the need for complex handcrafted feature extraction.
BACKGROUND:Basal cell carcinoma (BCC) is the most common skin cancer, which is highly damaging in its advanced stages. Computer-aided techniques provide a feasible option for early detection of BCC. However, automated BCC detection techniques immensely rely on handcrafting high-level precise features. Such features are not only computationally complex to design but can also represent a very limited aspect of the lesion characteristics. This paper proposes an automated BCC detection technique that directly learns the features from image data, eliminating the need for handcrafted feature design. METHODS: The proposed method is composed of 2 parts. First, an unsupervised feature learning framework is proposed which attempts to learn hidden characteristics of the data including vascular patterns directly from the images. This is done through the design of a sparse autoencoder (SAE). After the unsupervised learning, we treat each of the learned kernel weights of the SAE as a filter. Convolving each filter with the lesion image yields a feature map. Feature maps are condensed to reduce the dimensionality and are further integrated with patient profile information. The overall features are then fed into a softmax classifier for BCC classification. RESULTS: On a set of 1199 BCC images, the proposed framework achieved an area under the curve of 91.1%, while the visualization of learned features confirmed meaningful clinical interpretation of the features. CONCLUSION: The proposed framework provides a non-invasive fast BCC detection tool that incorporates both dermoscopic lesional features and clinical patient information, without the need for complex handcrafted feature extraction.
Authors: Babak Saravi; Frank Hassel; Sara Ülkümen; Alisia Zink; Veronika Shavlokhova; Sebastien Couillard-Despres; Martin Boeker; Peter Obid; Gernot Michael Lang Journal: J Pers Med Date: 2022-03-22
Authors: Philipp Tschandl; Cliff Rosendahl; Bengu Nisa Akay; Giuseppe Argenziano; Andreas Blum; Ralph P Braun; Horacio Cabo; Jean-Yves Gourhant; Jürgen Kreusch; Aimilios Lallas; Jan Lapins; Ashfaq Marghoob; Scott Menzies; Nina Maria Neuber; John Paoli; Harold S Rabinovitz; Christoph Rinner; Alon Scope; H Peter Soyer; Christoph Sinz; Luc Thomas; Iris Zalaudek; Harald Kittler Journal: JAMA Dermatol Date: 2019-01-01 Impact factor: 10.282
Authors: Julia Höhn; Achim Hekler; Eva Krieghoff-Henning; Jakob Nikolas Kather; Jochen Sven Utikal; Friedegund Meier; Frank Friedrich Gellrich; Axel Hauschild; Lars French; Justin Gabriel Schlager; Kamran Ghoreschi; Tabea Wilhelm; Heinz Kutzner; Markus Heppt; Sebastian Haferkamp; Wiebke Sondermann; Dirk Schadendorf; Bastian Schilling; Roman C Maron; Max Schmitt; Tanja Jutzi; Stefan Fröhling; Daniel B Lipka; Titus Josef Brinker Journal: J Med Internet Res Date: 2021-07-02 Impact factor: 5.428
Authors: Andre G C Pacheco; Gustavo R Lima; Amanda S Salomão; Breno Krohling; Igor P Biral; Gabriel G de Angelo; Fábio C R Alves; José G M Esgario; Alana C Simora; Pedro B C Castro; Felipe B Rodrigues; Patricia H L Frasson; Renato A Krohling; Helder Knidel; Maria C S Santos; Rachel B do Espírito Santo; Telma L S G Macedo; Tania R P Canuto; Luíz F S de Barros Journal: Data Brief Date: 2020-08-25
Authors: Rafaela Carvalho; Ana C Morgado; Catarina Andrade; Tudor Nedelcu; André Carreiro; Maria João M Vasconcelos Journal: Diagnostics (Basel) Date: 2021-12-24