| Literature DB >> 29051537 |
Zheyi Li1, Juli Pan2, Jinling Ma2, Zhen Zhang3, Yuxing Bai4.
Abstract
Spontaneous bone regeneration could occur to reestablish mandibular bony continuity in patients who underwent partial or total mandibulectomy for tumors with periosteum-preserving. However, scarce data is available related to the precise role of periosteum in this bone regeneration. Therefore we aimed to investigate the gene expression of periosteum that were involved in the mandibular bone regeneration. Mandibular segmental defects were created in six mini-pigs with periosteum preserved. The periosteum of defects and control site were harvested at 1 and 2 weeks. Gene ontology (GO) analysis showed that the mechanisms concerning immature wound healing were clearly up-regulated at week 1. In contrast, by week-2, the GO categories of skeletal development, ossification and bone mineralization were significantly over-represented at week-2 with several genes encoding cell differentiation, extracellular matrix formation, and anatomical structure development. Furthermore, Tgfβ/Bmp, Wnt and Notch signaling were all related to the osteogenic process in this study. Besides osteogenesis, genes related to angiogenesis and neurogenesis were also prominent at week-2. These findings revealed that the gene expression profile of the periosteum's cells participating in bone regeneration varied in different time points, and numbers of candidate genes that differentially expressed during early healing stages of intramembranous bone regeneration were suggested.Entities:
Mesh:
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Year: 2017 PMID: 29051537 PMCID: PMC5648814 DOI: 10.1038/s41598-017-13586-8
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1The surgical procedure. (a) The intact periosteum was bluntly and carefully detached from the cortical surface to expose the mandible. (b,c) 3-cm segmental mandible was resected with periosteum preserved, and a reconstruction plate was fixed across the defect.
Figure 2Histological examinations of periosteum of (a) control site, (b) defect site at week 1 and (c) defect site at week 2.
Numbers of statistically significant differentially regulated genes.
| Numbers of differentially significant genes | |||
|---|---|---|---|
| Increase | Decrease | Total | |
| Week 1 vs. cs. | 297 | 142 | 439 |
| Week 2 vs. 1 | 783 | 891 | 1674 |
| Week 2 vs. cs. | 1065 | 877 | 1942 |
Figure 3Volcano plots. (a) Week 1 vs. cs. (b) Week 2 vs. cs. (c) Week 2 vs. week 1. Red points indicate the mRNAs whose fold change ≥ 2.0 or ≤−2.0 and a P value ≤ 0.05.
Over-represented gene ontology (GO) terms (P < 0.05) in comparison between periosteum of defects site and control site at week 1, with number of genes indicated in parentheses.
| Down-regulated at week 1 | Up-regulated at week 1 |
|---|---|
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|
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| GO:0005783~endoplasmic reticulum (12) | GO:0031224~intrinsic to membrane (96) |
| GO:0005759~mitochondrial matrix (5) | GO:0016021~integral to membrane (93) |
| GO:0008305~integrin complex (7) | |
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|
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| GO:0022610~biological adhesion (9) | GO:0009611~response to wounding (16) |
| GO:0034613~cellular protein localization (15) | GO:0045449~regulation of transcription (9) |
| GO:0030001~metal ion transport (12) | GO:0050817~coagulation (11) |
| GO:0006508~proteolysis (20) | GO:0007610~behavior (6) |
| GO:0006886~intracellular protein transport (7) | GO:0045449~regulation of transcription (7) |
| GO:0006979~response to oxidative stress (4) | GO:0030154~cell differentiation (26) |
| GO:0006955~immune response (27) | |
| GO:0002526~acute inflammatory response (8) | |
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| GO:0030414~peptidase inhibitor activity (13) | GO:0046914~transition metal ion binding (42) |
| GO:0004857~enzyme inhibitor activity (14) | GO:0005529~sugar binding (10) |
| GO:0004175~endopeptidase activity (16) | GO:0020037~heme binding (10) |
| GO:0008270~zinc ion binding (21) |
Over-represented gene ontology (GO) terms (P < 0.05) in comparison between periosteum of defects site at week 2 and 1, with number of genes indicated in parentheses.
| Up-regulated at week 1 | Up-regulated at week 2 |
|---|---|
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| GO:0031224~intrinsic to membrane (60) | GO:0005576~extracellular region (77) |
| GO:0043299~intracellular organelle (58) | GO:0031012~extracellular matrix (43) |
| GO:0005886~plasma membrane (31) | GO:0005783~endoplasmic reticulum (32) |
| Biological process | Biological process |
| GO:0006955~immune response (42) | GO:0032502~developmental process (70) |
| GO:0019882~antigen processing and presentation (15) | G0:0048856~anatomical structure development (65) |
| GO:0006954~inflammatory response (15) | GO:0048731~system development (54) |
| GO:0048002~antigen processing and presentation of peptide antigen (5) | GO:0048513~organ development (46) |
| GO:0009611~response to wounding (13) | GO:0030154~cell differentiation (26) |
| GO:0006952~defense response (16) | GO:005087~neurological system process (12) |
| GO:0002526~acute inflammatory response (8) | GO:0007155~cell adhesion (28) |
| GO:0040007~growth (21) | GO:0001501~skeletal system development (18) |
| GO:0007169~transmembrane receptor protein tyrosine kinase signaling pathway (12) | GO:0060348~bone development (12) |
| GO:0009967~positive regulation of signal transduction (17) | GO:0030500~regulation of bone mineralization (7) |
| GO:0007249~I-kB kinase/NF-kB cascade (5) | GO:0001503~ossification (6) |
| GO:0030278~regulation of ossification (7) | |
| GO:0031214~biomineral formation (4) | |
| GO:0003018~vascular process in circulatory system (5) | |
| GO:0001944~vasculature development (4) | |
| GO:0001525~angiogenesis (4) | |
| GO:0007179~transforming growth factor beta receptor signaling pathway (9) | |
| GO:0007219~Notch signaling pathway (5) | |
| GO:0030509~Bmp signaling pathway (6) | |
| GO:0030111~regulation of Wnt receptor signaling pathway (5) | |
| GO:0016055~Wnt receptor signaling pathway (9) | |
| GO:0035023~ regulation of Rho protein signal transduction (9) | |
| GO:0007169~transmembrane receptor protein tyrosine kinase signaling pathway (3) | |
| GO:0046578~regulation of Ras protein signal transduction (3) | |
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| GO:0005509~calcium ion binding (16) | GO:0030246~carbohydrate binding (14) |
| GO:0005524~ATP binding (20) | GO:0005529~sugar binding (10) |
| GO:0032559~adenyl ribonucleotide binding (20) | GO:0005520~insulin-like growth factor binding (4) |
| GO:0043169~cation binding (46) | GO:0032403~protein complex binding (4) |
| GO:0046872~metal ion binding (45) | GO:0009975~cyclase activity (3) |
| GO:0032403~protein complex binding (4) | |
| GO:0005518~collagen binding (2) | |
| GO:0022857~transmembrane transporter activity (16) |
Over-represented gene ontology (GO) terms (P < 0.05) in comparison between periosteum of defects site and control site at week 2, with number of genes indicated in parentheses.
| Down-regulated at week 2 | Up-regulated at week 2 |
|---|---|
|
| Cellular component |
| GO:0031224~intrinsic to membrane (116) | GO:0044421~extracellular region part (35) |
| GO:0016021~integral to membrane (113) | GO:0005615~extracellular space (27) |
| GO:0044459~plasma membrane part (30) | GO:0042611~MHC protein complex (14) |
| GO:0005792~microsome (7) | GO:0005624~membrane fraction (7) |
| GO:0005829~cytosol (10) | |
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| GO:0051252~regulation of RNA metabolic process (21) | GO:0006955~immune response (58) |
| GO:0006355~regulation of transcription, DNA-dependent (21) | GO:0048731~system development (41) |
| GO:0043408~regulation of MAPKKK cascade (9) | GO:0009611~response to wounding (19) |
| GO:0051952~regulation of amine transport (11) | GO:0007155~cell adhesion (20) |
| GO:0045449~regulation of transcription (27) | GO:0048513~organ development (19) |
| GO:0000165~MAPKKK cascade (13) | GO:0040007~growth (13) |
| GO:0042060~wound healing (5) | GO:0006954~inflammatory response (15) |
| GO:0048878~chemical homeostasis (5) | GO:0002504~antigen processing and presentation of peptide or polysaccharide antigen via MHC class II (6) |
| GO:0030001~metal ion transport (12) | GO:0019882~antigen processing and presentation (17) |
| GO:0006461~protein complex assembly (7) | GO:0022610~biological adhesion (20) |
| GO:0006812~cation transport (14) | GO:0001501~skeletal system development (12) |
| GO:0009988~cell-cell recognition (5) | GO:0060348~bone development (12) |
| GO:0030001~metal ion transport (12) | GO:0051302~regulation of cell division (5) |
| GO:0048584~positive regulation of response to stimulus (5) | GO:0030278~regulation of ossification (7) |
| GO:0042592~homeostatic process (8) | GO:0001525~angiogenesis (6) |
| GO:0050817~coagulation (4) | GO:0035265~organ growth (4) |
| GO:0001503~ossification (4) | |
| GO:0016049~cell growth (7) | |
| GO:0030111~regulation of Wnt receptor signaling pathway (7) | |
| GO:0043393~regulation of protein binding (5) | |
| GO:0001944~vasculature development (3) | |
| GO:0030574~collagen catabolic process (3) | |
| GO:0016055~Wnt receptor signaling pathway (4) | |
| GO:0021700~developmental maturation (5) | |
| GO:0007179~transforming growth factor beta receptor signaling pathway (3) | |
| GO:0042136~neurotransmitter biosynthetic process (3) | |
| GO:0007218~neuropeptide signaling pathway (4) | |
| Molecular function |
|
| GO:0046872~metal ion binding (78) | GO:0046914~transition metal ion binding (54) |
| GO:0005509~calcium ion binding (22) | GO:0030528~transcription regulator activity (24) |
| GO:0003700~transcription factor activity (18) | GO:0004175~endopeptidase activity (22) |
| GO:0005529~sugar binding (13) | GO:0008233~peptidase activity (27) |
| GO:0005516~calmodulin binding (5) | GO:0004950~chemokine receptor activity (8) |
| GO:0019955~cytokine binding (12) | |
| GO:0030246~carbohydrate binding (18) | |
| GO:0008083~growth factor activity (9) | |
| GO:0004857~enzyme inhibitor activity (11) |
Gene members of the “Skeletal development” gene ontology group over-represented in the list of differentially expressed genes between week 1 and 2 (positive value indicates up-regulation at week 2).
| Gene symbol | Gene name | Fold change |
|---|---|---|
| ACAN | Aggrecan 1 | 3.01 |
| ACVR2B | Activin A receptor, type IIB | −2.02 |
| BGLAP | Bone γ-Carboxyglutamate(gla) protein (osteocalcin) | 8.32 |
| BMP2 | Bone morphogenetic protein 2 | 2.30 |
| BMP4 | Bone morphogenetic protein 4 | 2.30 |
| COL11A2 | Collagen, type XI,α2 | 4.08 |
| COL1A2 | Procollagen, type, 1α2 | 2.03 |
| COL3A1 | Collagen, type XIII, α1 | 3.81 |
| COL5A2 | Collagen, type V, α2 | 2.17 |
| DMP1 | Dentin matrix protein 1 | 13.31 |
| FGFR1 | Fibroblast growth factor receptor 1 | 2.44 |
| HOXC4 | Homeobox C4 | 6.39 |
| MSX1 | Msh homeobox 1 | 6.87 |
| PTHLH | Parathyroid hormone-like hormone | 10.76 |
| PTGS2 | Prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) | 6.02 |
| RUNX2 | Runt-related transcription factor 2 | 4.82 |
| SPARCL1 | SPARC-like 1 (hevin) | 3.02 |
| STC1 | Stanniocalcin 1 | 3.38 |
| TGFB3 | Transforming growth factor, beta 3 | 5.53 |
| THBS3 | Thrombospondin 3 | 13.63 |
| SMAD5 | Smad homologue 5 (drosophila) | 2.07 |
| WNT5A | Wingless-type MMTV integration site family, member 5A | −2.08 |
List of genes belonging to Notch signalling pathway that were significantly over expressed between week 1 and 2 (positive value indicates up-regulation at week 3).
| Gene symbol | Gene name | Fold change |
|---|---|---|
| CFD | Complement factor D (adipsin) | 3.12 |
| DTX2 | Deltex homolog 2 (Drosophila) | −2.61 |
| FOXC1 | Forkhead box C1 | 2.77 |
| NOTCH4 | Notch homolog 4 (Drosophila) | 2.42 |
| NRG1 | Neuregulin 1 | −2.64 |
List of genes belonging to Tgfβ/Bmp signaling pathway that were significantly over expressed between week 1 and 2 (positive value indicates up-regulation at week 2).
| Gene symbol | Gene name | Fold change |
|---|---|---|
| ACVR1 | Activin A receptor, type I | 2.21 |
| BAMBI | BMP and activin membrane-bound inhibitor homolog (Xenopus laevis) | −3.17 |
| BMP2 | Bone morphogenetic protein 2 | 2.30 |
| BMPR1A | Bone morphogenetic protein receptor, type IA | 3.61 |
| COL1A2 | Procollagen, type, 1α2 | 2.03 |
| DLX5 | Homeobox protein DLX-5 isoform 2 | 3.84 |
| GATA3 | GATA binding protein 3 | 2.19 |
| MAP3K1 | Mitogen-activated protein kinase kinase kinase 1 | 9.53 |
| SFRP2 | Secreted frizzled-related protein 4 | 6.31 |
| SMAD5 | Smad homologue 5 (drosophila) | 2.07 |
| TGFB3 | Transforming growth factor, beta 3 | 5.53 |
| THBS3 | Thrombospondin 3 | 13.63 |
| ZFYVE9 | Zinc finger, FYVE domain containing 9 | 2.12 |
List of genes belonging to Wnt signaling pathway that were significantly over expressed between week 1 and 2 (positive value indicates up-regulation at week 2).
| Gene symbol | Gene name | Fold change |
|---|---|---|
| APC2 | Adenomatosis polyposis coli | 4.2 |
| AXIN2 | AXIN2 | −2.08 |
| CPZ | Carboxypeptidase Z | 8.3 |
| CCND1 | Cyclin D1 | 2.1 |
| DKK1 | dickkopf 1 homolog (Xenopus laevis) | 2.3 |
| DVL1 | Dishevelled, dsh homologue 1 (Drosophila) | 2.5 |
| FZD1 | Frizzled-1 | 2.1 |
| FZD2 | Frizzled-2 | 3.4 |
| FZRB | Frizzled-related protein | 9.7 |
| LZTS2 | Leucine zipper, putative tumor suppressor 2 | 2.1 |
| LRP1 | Prolow-density lipoprotein receptor-related protein 1 | 3.28 |
| LRP5 | Low-density lipoprotein receptor-related protein 5 | 2.05 |
| WIF1 | Wnt inhibitory factor 1 | 5.37 |
| WISP2 | WNT1-inducible-signaling pathway protein 2 | 6.15 |