Literature DB >> 29037439

Caenorhabditis elegans Dosage Compensation: Insights into Condensin-Mediated Gene Regulation.

Sarah Elizabeth Albritton1, Sevinç Ercan2.   

Abstract

Recent work demonstrating the role of chromosome organization in transcriptional regulation has sparked substantial interest in the molecular mechanisms that control chromosome structure. Condensin, an evolutionarily conserved multisubunit protein complex, is essential for chromosome condensation during cell division and functions in regulating gene expression during interphase. In Caenorhabditis elegans, a specialized condensin forms the core of the dosage compensation complex (DCC), which specifically binds to and represses transcription from the hermaphrodite X chromosomes. DCC serves as a clear paradigm for addressing how condensins target large chromosomal domains and how they function to regulate chromosome structure and transcription. Here, we discuss recent research on C. elegans DCC in the context of canonical condensin mechanisms as have been studied in various organisms.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  X chromosome; condensin; cooperation; dosage compensation; gene regulation; genome organization

Mesh:

Substances:

Year:  2017        PMID: 29037439      PMCID: PMC5741500          DOI: 10.1016/j.tig.2017.09.010

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  99 in total

1.  Condensin association with histone H2A shapes mitotic chromosomes.

Authors:  Kenji Tada; Hiroaki Susumu; Takeshi Sakuno; Yoshinori Watanabe
Journal:  Nature       Date:  2011-06-01       Impact factor: 49.962

2.  Chromosomal cohesin forms a ring.

Authors:  Stephan Gruber; Christian H Haering; Kim Nasmyth
Journal:  Cell       Date:  2003-03-21       Impact factor: 41.582

3.  Reconstitution of mitotic chromatids with a minimum set of purified factors.

Authors:  Keishi Shintomi; Tatsuro S Takahashi; Tatsuya Hirano
Journal:  Nat Cell Biol       Date:  2015-06-15       Impact factor: 28.824

4.  Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:  Mark B Gerstein; Zhi John Lu; Eric L Van Nostrand; Chao Cheng; Bradley I Arshinoff; Tao Liu; Kevin Y Yip; Rebecca Robilotto; Andreas Rechtsteiner; Kohta Ikegami; Pedro Alves; Aurelien Chateigner; Marc Perry; Mitzi Morris; Raymond K Auerbach; Xin Feng; Jing Leng; Anne Vielle; Wei Niu; Kahn Rhrissorrakrai; Ashish Agarwal; Roger P Alexander; Galt Barber; Cathleen M Brdlik; Jennifer Brennan; Jeremy Jean Brouillet; Adrian Carr; Ming-Sin Cheung; Hiram Clawson; Sergio Contrino; Luke O Dannenberg; Abby F Dernburg; Arshad Desai; Lindsay Dick; Andréa C Dosé; Jiang Du; Thea Egelhofer; Sevinc Ercan; Ghia Euskirchen; Brent Ewing; Elise A Feingold; Reto Gassmann; Peter J Good; Phil Green; Francois Gullier; Michelle Gutwein; Mark S Guyer; Lukas Habegger; Ting Han; Jorja G Henikoff; Stefan R Henz; Angie Hinrichs; Heather Holster; Tony Hyman; A Leo Iniguez; Judith Janette; Morten Jensen; Masaomi Kato; W James Kent; Ellen Kephart; Vishal Khivansara; Ekta Khurana; John K Kim; Paulina Kolasinska-Zwierz; Eric C Lai; Isabel Latorre; Amber Leahey; Suzanna Lewis; Paul Lloyd; Lucas Lochovsky; Rebecca F Lowdon; Yaniv Lubling; Rachel Lyne; Michael MacCoss; Sebastian D Mackowiak; Marco Mangone; Sheldon McKay; Desirea Mecenas; Gennifer Merrihew; David M Miller; Andrew Muroyama; John I Murray; Siew-Loon Ooi; Hoang Pham; Taryn Phippen; Elicia A Preston; Nikolaus Rajewsky; Gunnar Rätsch; Heidi Rosenbaum; Joel Rozowsky; Kim Rutherford; Peter Ruzanov; Mihail Sarov; Rajkumar Sasidharan; Andrea Sboner; Paul Scheid; Eran Segal; Hyunjin Shin; Chong Shou; Frank J Slack; Cindie Slightam; Richard Smith; William C Spencer; E O Stinson; Scott Taing; Teruaki Takasaki; Dionne Vafeados; Ksenia Voronina; Guilin Wang; Nicole L Washington; Christina M Whittle; Beijing Wu; Koon-Kiu Yan; Georg Zeller; Zheng Zha; Mei Zhong; Xingliang Zhou; Julie Ahringer; Susan Strome; Kristin C Gunsalus; Gos Micklem; X Shirley Liu; Valerie Reinke; Stuart K Kim; LaDeana W Hillier; Steven Henikoff; Fabio Piano; Michael Snyder; Lincoln Stein; Jason D Lieb; Robert H Waterston
Journal:  Science       Date:  2010-12-22       Impact factor: 47.728

Review 5.  TFIIIC bound DNA elements in nuclear organization and insulation.

Authors:  Jacob G Kirkland; Jesse R Raab; Rohinton T Kamakaka
Journal:  Biochim Biophys Acta       Date:  2012-09-21

6.  The C. elegans dosage compensation complex propagates dynamically and independently of X chromosome sequence.

Authors:  Sevinç Ercan; Lindsay L Dick; Jason D Lieb
Journal:  Curr Biol       Date:  2009-10-22       Impact factor: 10.834

7.  A shared role for RBF1 and dCAP-D3 in the regulation of transcription with consequences for innate immunity.

Authors:  Michelle S Longworth; James A Walker; Endre Anderssen; Nam-Sung Moon; Andrew Gladden; Margarete M S Heck; Sridhar Ramaswamy; Nicholas J Dyson
Journal:  PLoS Genet       Date:  2012-04-05       Impact factor: 5.917

8.  SMC condensin entraps chromosomal DNA by an ATP hydrolysis dependent loading mechanism in Bacillus subtilis.

Authors:  Larissa Wilhelm; Frank Bürmann; Anita Minnen; Ho-Chul Shin; Christopher P Toseland; Byung-Ha Oh; Stephan Gruber
Journal:  Elife       Date:  2015-05-07       Impact factor: 8.140

9.  Cohesin relocation from sites of chromosomal loading to places of convergent transcription.

Authors:  Armelle Lengronne; Yuki Katou; Saori Mori; Shihori Yokobayashi; Gavin P Kelly; Takehiko Itoh; Yoshinori Watanabe; Katsuhiko Shirahige; Frank Uhlmann
Journal:  Nature       Date:  2004-06-30       Impact factor: 49.962

10.  Transcription factors mediate condensin recruitment and global chromosomal organization in fission yeast.

Authors:  Kyoung-Dong Kim; Hideki Tanizawa; Osamu Iwasaki; Ken-Ichi Noma
Journal:  Nat Genet       Date:  2016-08-22       Impact factor: 38.330

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  15 in total

1.  Binding of an X-Specific Condensin Correlates with a Reduction in Active Histone Modifications at Gene Regulatory Elements.

Authors:  Lena Annika Street; Ana Karina Morao; Lara Heermans Winterkorn; Chen-Yu Jiao; Sarah Elizabeth Albritton; Mohammed Sadic; Maxwell Kramer; Sevinç Ercan
Journal:  Genetics       Date:  2019-05-22       Impact factor: 4.562

Review 2.  The Role of Xist in X-Chromosome Dosage Compensation.

Authors:  Anna Sahakyan; Yihao Yang; Kathrin Plath
Journal:  Trends Cell Biol       Date:  2018-06-14       Impact factor: 20.808

3.  Dual roles for nuclear RNAi Argonautes in Caenorhabditis elegans dosage compensation.

Authors:  Michael B Davis; Eshna Jash; Bahaar Chawla; Rebecca A Haines; Lillian E Tushman; Ryan Troll; Györgyi Csankovszki
Journal:  Genetics       Date:  2022-05-05       Impact factor: 4.402

4.  A role for condensin in mediating transcriptional adaptation to environmental stimuli.

Authors:  Lucy Lancaster; Harshil Patel; Gavin Kelly; Frank Uhlmann
Journal:  Life Sci Alliance       Date:  2021-06-03

5.  Difference in phenotypic severity of presumed null alleles of capg-1.

Authors:  Sarah VanDiepenbos; Györgyi Csankovszki
Journal:  MicroPubl Biol       Date:  2020-05-10

6.  Structure, dynamics and roX2-lncRNA binding of tandem double-stranded RNA binding domains dsRBD1,2 of Drosophila helicase Maleless.

Authors:  Pravin Kumar Ankush Jagtap; Marisa Müller; Pawel Masiewicz; Sören von Bülow; Nele Merret Hollmann; Po-Chia Chen; Bernd Simon; Andreas W Thomae; Peter B Becker; Janosch Hennig
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

7.  Structural Basis of an Asymmetric Condensin ATPase Cycle.

Authors:  Markus Hassler; Indra A Shaltiel; Marc Kschonsak; Bernd Simon; Fabian Merkel; Lena Thärichen; Henry J Bailey; Jakub Macošek; Sol Bravo; Jutta Metz; Janosch Hennig; Christian H Haering
Journal:  Mol Cell       Date:  2019-06-20       Impact factor: 17.970

Review 8.  Condensin action and compaction.

Authors:  Matthew Robert Paul; Andreas Hochwagen; Sevinç Ercan
Journal:  Curr Genet       Date:  2018-10-25       Impact factor: 3.886

9.  Non-canonical Drosophila X chromosome dosage compensation and repressive topologically associated domains.

Authors:  Hangnoh Lee; Brian Oliver
Journal:  Epigenetics Chromatin       Date:  2018-10-24       Impact factor: 4.954

Review 10.  Emerging Roles for Chromo Domain Proteins in Genome Organization and Cell Fate in C. elegans.

Authors:  Abhimanyu DasGupta; Tammy L Lee; Chengyin Li; Arneet L Saltzman
Journal:  Front Cell Dev Biol       Date:  2020-10-23
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