Literature DB >> 29035356

Circulating tumour DNA methylation markers for diagnosis and prognosis of hepatocellular carcinoma.

Rui-Hua Xu1, Wei Wei1,2, Michal Krawczyk2, Wenqiu Wang2, Huiyan Luo1,2, Ken Flagg2, Shaohua Yi2, William Shi2, Qingli Quan3, Kang Li3, Lianghong Zheng4, Heng Zhang5, Bennett A Caughey2, Qi Zhao1, Jiayi Hou2, Runze Zhang2, Yanxin Xu3, Huimin Cai3,4, Gen Li3,4, Rui Hou4, Zheng Zhong2, Danni Lin2, Xin Fu2, Jie Zhu2, Yaou Duan2, Meixing Yu3, Binwu Ying6, Wengeng Zhang3, Juan Wang7, Edward Zhang2, Charlotte Zhang2, Oulan Li2, Rongping Guo1, Hannah Carter2, Jian-Kang Zhu5, Xiaoke Hao7, Kang Zhang2,3,8.   

Abstract

An effective blood-based method for the diagnosis and prognosis of hepatocellular carcinoma (HCC) has not yet been developed. Circulating tumour DNA (ctDNA) carrying cancer-specific genetic and epigenetic aberrations may enable a noninvasive 'liquid biopsy' for diagnosis and monitoring of cancer. Here, we identified an HCC-specific methylation marker panel by comparing HCC tissue and normal blood leukocytes and showed that methylation profiles of HCC tumour DNA and matched plasma ctDNA are highly correlated. Using cfDNA samples from a large cohort of 1,098 HCC patients and 835 normal controls, we constructed a diagnostic prediction model that showed high diagnostic specificity and sensitivity (P < 0.001) and was highly correlated with tumour burden, treatment response, and stage. Additionally, we constructed a prognostic prediction model that effectively predicted prognosis and survival (P < 0.001). Together, these findings demonstrate in a large clinical cohort the utility of ctDNA methylation markers in the diagnosis, surveillance, and prognosis of HCC.

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Year:  2017        PMID: 29035356     DOI: 10.1038/nmat4997

Source DB:  PubMed          Journal:  Nat Mater        ISSN: 1476-1122            Impact factor:   43.841


  211 in total

Review 1.  Abbreviated Magnetic Resonance Imaging for HCC Surveillance.

Authors:  Naik Vietti Violi; Kathryn J Fowler; Claude B Sirlin; Bachir Taouli
Journal:  Clin Liver Dis (Hoboken)       Date:  2021-04-13

2.  Loci-specific differences in blood DNA methylation in HBV-negative populations at risk for hepatocellular carcinoma development.

Authors:  Katarzyna Lubecka; Kirsty Flower; Megan Beetch; Jay Qiu; Lucinda Kurzava; Hannah Buvala; Adam Ruhayel; Samer Gawrieh; Suthat Liangpunsakul; Tracy Gonzalez; George McCabe; Naga Chalasani; James M Flanagan; Barbara Stefanska
Journal:  Epigenetics       Date:  2018-07-30       Impact factor: 4.528

3.  Tumour biomarkers: A mark is a marker.

Authors:  Ulrike Harjes
Journal:  Nat Rev Cancer       Date:  2017-11-22       Impact factor: 60.716

4.  Towards clinical implementation of circulating cell-free DNA in precision medicine.

Authors:  Wei Zhang
Journal:  J Transl Genet Genom       Date:  2019-09-17

5.  DNA methylation markers in the diagnosis and prognosis of common leukemias.

Authors:  Hua Jiang; Zhiying Ou; Yingyi He; Meixing Yu; Shaoqing Wu; Gen Li; Jie Zhu; Ru Zhang; Jiayi Wang; Lianghong Zheng; Xiaohong Zhang; Wenge Hao; Liya He; Xiaoqiong Gu; Qingli Quan; Edward Zhang; Huiyan Luo; Wei Wei; Zhihuan Li; Guangxi Zang; Charlotte Zhang; Tina Poon; Daniel Zhang; Ian Ziyar; Run-Ze Zhang; Oulan Li; Linhai Cheng; Taylor Shimizu; Xinping Cui; Jian-Kang Zhu; Xin Sun; Kang Zhang
Journal:  Signal Transduct Target Ther       Date:  2020-01-10

6.  A liquid biopsy assay for identifying early-stage hepatocellular carcinoma in asymptomatic HBsAg-seropositive individuals.

Authors:  Chunfeng Qu; Yuchen Jiao; Yuting Wang
Journal:  Mol Cell Oncol       Date:  2019-05-28

7.  Promoter aberrant methylation status of ADRA1A is associated with hepatocellular carcinoma.

Authors:  Guoqiao Chen; Xiaoxiao Fan; Yirun Li; Lifeng He; Shanjuan Wang; Yili Dai; Cui Bin; Daizhan Zhou; Hui Lin
Journal:  Epigenetics       Date:  2020-01-14       Impact factor: 4.528

Review 8.  Utility of Liquid Biopsy Analysis in Detection of Hepatocellular Carcinoma, Determination of Prognosis, and Disease Monitoring: A Systematic Review.

Authors:  Vincent L Chen; Dabo Xu; Max S Wicha; Anna S Lok; Neehar D Parikh
Journal:  Clin Gastroenterol Hepatol       Date:  2020-04-11       Impact factor: 11.382

9.  Diagnostic Power of DNA Methylation Classifiers for Early Detection of Cancer.

Authors:  Dhruvajyoti Roy; Maarit Tiirikainen
Journal:  Trends Cancer       Date:  2020-02-03

10.  Ultrasensitive detection of circulating tumour DNA via deep methylation sequencing aided by machine learning.

Authors:  Naixin Liang; Bingsi Li; Ziqi Jia; Chenyang Wang; Pancheng Wu; Tao Zheng; Yanyu Wang; Fujun Qiu; Yijun Wu; Jing Su; Jiayue Xu; Feng Xu; Huiling Chu; Shuai Fang; Xingyu Yang; Chengju Wu; Zhili Cao; Lei Cao; Zhongxing Bing; Hongsheng Liu; Li Li; Cheng Huang; Yingzhi Qin; Yushang Cui; Han Han-Zhang; Jianxing Xiang; Hao Liu; Xin Guo; Shanqing Li; Heng Zhao; Zhihong Zhang
Journal:  Nat Biomed Eng       Date:  2021-06-15       Impact factor: 25.671

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