Literature DB >> 29029130

Alternative Sample Types for HIV-1 Antiretroviral Drug Resistance Testing.

Dolly Singh1, Adit Dhummakupt1, Lilly Siems1, Deborah Persaud1.   

Abstract

Monitoring human immunodeficiency virus type 1 (HIV-1) drug resistance is critical for assessing ART effectiveness and treatment outcomes for HIV-1-infected individuals, including children, worldwide. Traditionally, testing for HIV-1 drug resistance has primarily been performed on plasma samples, and with commercially available, clinically validated assays that are costly and difficult to access. While plasma is the preferred sample for HIV-1 drug resistance genotyping, plasma analysis requires sophisticated laboratory equipment, personnel, space, and stringent storage conditions for maintenance of sample integrity and transport. With the limitations in feasibility and affordability of providing these ideal conditions for plasma genotyping in resource-constrained settings, the field has gained substantial experience with the dried blood spot (DBS) technique as an alternative. Moreover, DBS analysis can be used to comprehensively monitor the spread of the epidemic with applications to more-sensitive and quantitative technologies to assess HIV-1 globally.
© The Author 2017. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  HIV-1; antiretroviral drug resistance; dried blood spot

Mesh:

Substances:

Year:  2017        PMID: 29029130      PMCID: PMC5853792          DOI: 10.1093/infdis/jix386

Source DB:  PubMed          Journal:  J Infect Dis        ISSN: 0022-1899            Impact factor:   5.226


  30 in total

1.  Update on World Health Organization HIV drug resistance prevention and assessment strategy: 2004-2011.

Authors:  M R Jordan; D E Bennett; M A Wainberg; D Havlir; S Hammer; C Yang; L Morris; M Peeters; A M Wensing; N Parkin; J B Nachega; A Phillips; A De Luca; E Geng; A Calmy; E Raizes; P Sandstrom; C P Archibald; J Perriëns; C M McClure; S Y Hong; J H McMahon; N Dedes; D Sutherland; S Bertagnolio
Journal:  Clin Infect Dis       Date:  2012-05       Impact factor: 9.079

2.  HIV-1 resistance genotyping on dried serum spots.

Authors:  Jean-Christophe Plantier; Raoudha Dachraoui; Véronique Lemée; Marie Gueudin; Françoise Borsa-Lebas; François Caron; François Simon
Journal:  AIDS       Date:  2005-03-04       Impact factor: 4.177

3.  Detection of drug resistance mutations at low plasma HIV-1 RNA load in a European multicentre cohort study.

Authors:  Mattia C F Prosperi; Nicola Mackie; Simona Di Giambenedetto; Maurizio Zazzi; Ricardo Camacho; Iuri Fanti; Carlo Torti; Anders Sönnerborg; Rolf Kaiser; Francisco M Codoñer; Kristel Van Laethem; Loveleen Bansi; David A M C van de Vijver; Anna Maria Geretti; Andrea De Luca
Journal:  J Antimicrob Chemother       Date:  2011-05-30       Impact factor: 5.790

Review 4.  Alarming increase in pretreatment HIV drug resistance in children living in sub-Saharan Africa: a systematic review and meta-analysis.

Authors:  R S Boerma; K C E Sigaloff; A S Akanmu; S Inzaule; M Boele van Hensbroek; T F Rinke de Wit; J C Calis
Journal:  J Antimicrob Chemother       Date:  2016-12-20       Impact factor: 5.790

5.  The use of dried blood spot specimens for HIV-1 drug resistance genotyping in young children initiating antiretroviral therapy.

Authors:  Anna T Salimo; Johanna Ledwaba; Ashraf Coovadia; Elaine J Abrams; Karl-Günter Technau; Louise Kuhn; Lynn Morris; Gillian M Hunt
Journal:  J Virol Methods       Date:  2015-07-17       Impact factor: 2.014

6.  Stability of HIV RNA in plasma specimens stored at different temperatures.

Authors:  B Amellal; R Murphy; A Maiga; G Brucker; C Katlama; V Calvez; A G Marcelin
Journal:  HIV Med       Date:  2008-08-27       Impact factor: 3.180

7.  HIV-1 drug resistance testing from dried blood spots collected in rural Tanzania using the ViroSeq HIV-1 Genotyping System.

Authors:  Asgeir Johannessen; Carolina Garrido; Natalia Zahonero; Ezra Naman; Carmen de Mendoza
Journal:  J Antimicrob Chemother       Date:  2010-11-25       Impact factor: 5.790

8.  Global trends in antiretroviral resistance in treatment-naive individuals with HIV after rollout of antiretroviral treatment in resource-limited settings: a global collaborative study and meta-regression analysis.

Authors:  Ravindra K Gupta; Michael R Jordan; Binta J Sultan; Andrew Hill; Daniel H J Davis; John Gregson; Anthony W Sawyer; Raph L Hamers; Nicaise Ndembi; Deenan Pillay; Silvia Bertagnolio
Journal:  Lancet       Date:  2012-07-23       Impact factor: 79.321

9.  HIV drug resistance mutations in proviral DNA from a community treatment program.

Authors:  Anne Derache; Hyoung-Shik Shin; Maya Balamane; Elizabeth White; Dennis Israelski; Jeffrey D Klausner; Alexandra H Freeman; David Katzenstein
Journal:  PLoS One       Date:  2015-01-30       Impact factor: 3.240

10.  Use of Dried Blood Spots to Elucidate Full-Length Transmitted/Founder HIV-1 Genomes.

Authors:  Jesus F Salazar-Gonzalez; Maria G Salazar; Damien C Tully; Colin B Ogilvie; Gerald H Learn; Todd M Allen; Sonya L Heath; Paul Goepfert; Katharine J Bar
Journal:  Pathog Immun       Date:  2016
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  4 in total

1.  Whatman FTA cards versus plasma specimens for the quantitation of HIV-1 RNA using two real-time PCR assays.

Authors:  Abdourahamane Yacouba; Malika Congo; Gérard Komonsira Dioma; Hermann Somlare; David Coulidiaty; Kalifa Ouattara; Lassana Sangare
Journal:  Access Microbiol       Date:  2020-06-17

2.  Real-Life Feasibility of HIV Drug Resistance Testing Using Dried Filter Analytes in Kenyan Children and Adolescents Living with HIV.

Authors:  Akarsh Manne; Alexander DeLong; Winstone Nyandiko; Allison K DeLong; Rachel Vreeman; Vladimir Novitsky; Anthony Ngeresa; Edwin Sang; Ashley Chory; Josephine Aluoch; Eslyne Jepkemboi; Millicent Orido; Celestine Ashimosi; Festus Sang; Joseph W Hogan; Rami Kantor
Journal:  Microbiol Spectr       Date:  2022-04-07

3.  Separation of Plasma from Whole Blood by Use of the cobas Plasma Separation Card: a Compelling Alternative to Dried Blood Spots for Quantification of HIV-1 Viral Load.

Authors:  Sergio Carmona; Britta Seiverth; Dieketseng Magubane; Lucia Hans; Matthias Hoppler
Journal:  J Clin Microbiol       Date:  2019-03-28       Impact factor: 5.948

Review 4.  Probe Capture Enrichment Methods for HIV and HCV Genome Sequencing and Drug Resistance Genotyping.

Authors:  Chantal Munyuza; Hezhao Ji; Emma R Lee
Journal:  Pathogens       Date:  2022-06-16
  4 in total

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