| Literature DB >> 29028667 |
Sandra Pinto-Cardoso1, Nichole R Klatt2, Gustavo Reyes-Terán1.
Abstract
PURPOSE OF REVIEW: Little is known on how different antiretroviral (ARV) drugs affect the gut microbiome in HIV infection; and conflicting data exists on the effect of ARV drugs on residual inflammation/immune activation and microbial translocation. RECENTEntities:
Mesh:
Substances:
Year: 2018 PMID: 29028667 PMCID: PMC5718259 DOI: 10.1097/COH.0000000000000428
Source DB: PubMed Journal: Curr Opin HIV AIDS ISSN: 1746-630X Impact factor: 4.283
Food and Drug Administration-approved individual antiretroviral drugs [1,2]
| Class of ARV drugs | NRTIs | NNRTIs | Protease inhibitors | Fusion Inhibitors | Entry Inhibitors | INSTIs |
| Phase of HIV replication cycle it blocks | Reverse transcription | Reverse transcription | Maturation | Entry | Entry | Integration |
| Protein target | HIV reverse transcriptase | HIV reverse transcriptase | HIV protease | HIV gp41 | Host CCR5 co-receptor | HIV integrase |
| ARV drug generic name (and known acronyms) | Abacavir (ABC) | Efavirenz (EFV) | Atazanavir (ATV) | Enfuvirtide (T-20) | Maraviroc (MVC) | Dolutegravir (DTG) |
| Didanosine (ddI, ddI EC) | Etravirine (ETR) | Darunavir (DRV) | Elvitegravir (EVG) | |||
| Emtricitabine (FTC) | Nevirapine (NVP) | Fosamprenavir (FPV) | Raltegravir (RAL) | |||
| Lamivudine (3TC) | Rilpivirine (RPV) | Indinavir (IDV) | ||||
| Stavudine (d4T) | Nelfinavir (NFV) | |||||
| Tenofovir disoproxil fumarate (TDF) | Ritonavir (RTV) | |||||
| Zidovudine (AZT, ZDV) | Saquinavir (SQV) | |||||
| Tenofovir alafenamide (TAF) | Tipranavir (TPV) |
ARV, antiretroviral; CCR5, C-C chemokine receptor type 5; FDA, Food and Drug Administration; gp41, glycoprotein 41; INSTIs, integrase strand transfer inhibitors; NNRTIs, nonnucleoside reverse transcriptase inhibitors; NRTIs, nucleoside reverse transcriptase inhibitors.
Current recommended antiretroviral therapy regimensa
| Recommended options | ||||||
| ARV drug class | NRTIs | NNRTIs | INSTIs | Protease inhibitors | Pharmacokinetic enhancer | Comments |
| INSTI-based | ABC + 3TC | – | DTG | – | – | If HLA-B*5701 negative |
| INSTI-based | TDF + FTC | – | DTG | – | – | |
| INSTI-based | TDF + FTC | – | EVG | – | Cobicistat | |
| INSTI-based | TAF + FTC | – | EVG | – | Cobicistat | |
| INSTI-based | TDF + FTC | – | RAL | – | – | |
| Protease inhibitor-based | TDF + FTC | – | – | DRV + RTV | – | |
| Protease inhibitor-based | TAF + FTC | – | – | DRV + RTV | – | |
| Alternative options | ||||||
| NNRTI-based | TDF + FTC | EFV | – | – | – | |
| NNRTI-based | TAF + FTC | EFV | – | – | – | |
| NNRTI-based | TDF + FTC | RPV | – | – | – | If pVL < 100 000 copies/ml and CD4+ > 200 cells/mm3 |
| NNRTI-based | TAF + FTC | RPV | – | – | – | If pVL < 100 000 copies/ml and CD4+ > 200 cells/mm3 |
| Protease inhibitor-based | TDF + FTC | – | – | ATV + RTV | – | |
| Protease inhibitor-based | TAF + FTC | – | – | ATV + RTV | – | |
| Protease inhibitor-based | TDF + FTC | – | – | ATV | Cobicistat | |
| Protease inhibitor-based | TAF + FTC | – | – | ATV | Cobicistat | |
| Protease inhibitor-based | ABC + 3TC | – | – | DRV + RTV | If HLA-B*5701 negative | |
| Protease inhibitor-based | ABC + 3TC | – | – | DRV | Cobicistat | If HLA-B*5701 negative |
| Protease inhibitor-based | TDF + FTC | – | – | DRV | Cobicistat | |
| Protease inhibitor-based | TAF + FTC | – | – | DRV | Cobicistat | |
aBased on the DHHS Panel on Antiretroviral Guidelines for Adults and Adolescents Guidelines: https://aidsinfo.nih.gov/guidelines/html/1/adult-and-adolescent-arv-guidelines/11/what-to-start.
INSTIs, integrase strand transfer inhibitors; NNRTIs, nonnucleoside reverse transcriptase inhibitors; NRTIs, nucleoside reverse transcriptase inhibitors.
Differential effects of ARV drugs on the gut microbiome: summary of the main findings
| Nowak | Pinto-Cardoso | Villanueva-Millán | |
| Type of cohort | Longitudinal | Cross-sectional | Cross-sectional |
| Sampling | Feces and blood (plasma) | Feces and blood (plasma) | Feces and blood (plasma and serum) |
| Cohort | 28 viremic HIV+ with pVL3 elite controllers9 HIV- controls | 33 HIV+ on ART10 HIV- controls | 45 HIV+ on ART5 untreated HIV+21 HIV- controls |
| Type of ART combinations and number of individuals (number per group) | NNRTIs with NRTIs ( | NNRTIs with NRTIs ( | NNRTIs with NRTIs ( |
| Time on ART | 10 months | 5 years | 13 years |
| Effective ART suppression | At 10-month follow-up: pVL < 40 ( | pVL < 40 for all ART patients | ART for at least 1 year and pVL less than 20 for at least 6 months |
| Markers of microbial translocation | sCD14LPSLBP | sCD14 | sCD14LBP |
| Markers of endothelial damage/turnover/activation | Not included | I-FABP | I-CAMV-CAM |
| Markers of systemic inflammation–immune activation | IL-6D-Dimer | IL-6D-DimerhsCRP% HLADR+ CD38+ CD8+ T cell | IL-6 |
| Effect of ARVs on alpha diversity (number of species) | No differences were observed between NNRTIs and protease inhibitors↓↓↓ Number bacterial taxa in ART patients compared with baseline*** | ↓ Protease inhibitors versus controls*↓ NNRTIs versus controls*≈ Protease inhibitors versus NNRTIs | ↓↓ Protease inhibitors versus controls **↓ NNRTIs versus controls *≈ INSTIs versus controls≈ Protease inhibitors versus NNRTIs versus INSTIs |
| Effects of ARVs on microbial translocation | Not assessedNegative correlation between LPS, LBP, sCD14, sCD163 and CD4+/CD8+ ratio | ↑ sCD14 protease inhibitors versus controls*≈ NNRTIs versus controls≈ Protease inhibitors versus NNRTIs | ↑ sCD14 protease inhibitors versus controls *↑ sCD14 NNRTIs versus controls *≈ sCD14 INSTIs versus controls |
| Effects of ARVs on gut microbiome | ↓↓ In Firmicutes: | Differential clustering of gut microbiome with ART regimens (Adonis R2 = 10.37%***)↓↓↓ | ↑ Proteobacteria in ART versus controls↓ Firmicutes in protease inhibitors versus controls*↓ Number of bacterial species in protease inhibitors versus controls*13 genera depleted (↓↓↓) in protease inhibitors versus controls, against 7 for NNRTIs and 6 for INSTIsINSTIs cluster inside the control cluster↓↓↓ F. prausnitzii in protease inhibitors versus controls***↑↑↑ |
| Effects of ARVs on systemic inflammation and immune activation | No correlation between IL-6 and D-dimer and observed bacterial species | ≈ Protease inhibitors versus NNRTIs≈ Protease inhibitors versus controls≈ NNRTIs versus controls | ↑ IL-6 protease inhibitors versus controls** |
| Effects of ARVs on endothelial damage/turnover/activation | Not assessed | ↑↑↑ I-FABP protease inhibitors versus controls ***↑↑ I-FABP protease inhibitors versus NNRTIs **≈ NNRTIs versus controls | ↑ I-CAM NNRTIs versus controls*↑ I-CAM INSTIs versus controls*↑↑ I-CAM protease inhibitors versus controls**↑↑ V-CAM protease inhibitors versus controls*** |
| Main findings and conclusions | Bacterial diversity correlated positively with CD4+ T-cell counts and negatively with markers of microbial translocation and monocyte activation | Long-term ART does not restore richness of the gut microbiomeBPB are depleted in treated HIV infectionAbsence of BPB correlates with increased endothelial barrier damage | INSTIs with NRTIs ART combination restores the richness of the gut microbiome to normal levels (control group) |
| Strengths | Longitudinal study | Dietary assessment | Inclusion of INSTIs in ART cohortCo-infection with HCV and HBV |
| Limitations acknowledged by authors | Did not control for dietLack of intestinal biopsies to corroborate findings in fecesControl group not matched for ethnical background | Did not control for sexual practicesAbsence of untreated HIV+ individualsSmall number of HIV- individuals | Did not control for confounding factors (HIV acquisition, diet) |
Symbols to denote a significant increase (↑) or decrease (↓) or no differences (≈) were used. The asterisks (*), (**), (***) are used according to the P-values, P < 0.05, P < 0.01 and P < 0.001, respectively, as reported in the individual manuscripts.
ART, antiretroviral therapy; ARV, antiretroviral; BPB, butyrate-producing bacteria; HBV, Hepatitis B virus; HCV, Hepatitis C virus; HIV+, HIV-infected; HIV-, HIV-uninfected; hsCRP, high-sensitivity C-reactive protein; I-CAM, intercellular adhesion molecule; I-FABP, intestinal-fatty acid-binding protein; IL-6, interleukin 6; INSTIs, integrase strand transfer inhibitors; LBP, LPS-binding protein; LPS, lipopolysaccharide; NNRTIs, nonnucleoside reverse transcriptase inhibitors; NRTIs, nucleoside reverse transcriptase inhibitors; pVL, plasma viral load (copies/ml); RTV, ritonavir; sCD14, soluble CD14; V-CAM, vascular cell adhesion molecule.