Literature DB >> 31178123

Surveying Gut Microbiome Research in Africans: Toward Improved Diversity and Representation.

Ryan Brewster1, Fiona B Tamburini2, Edgar Asiimwe1, Ovokeraye Oduaran3, Scott Hazelhurst4, Ami S Bhatt5.   

Abstract

Descriptive and translational investigations into the human gut microbiome (GM) are rapidly expanding; however, studies are largely restricted to industrialized populations in the USA and Europe. Little is known about microbial variability and its implications for health and disease in other parts of the world. Populations in Africa are particularly underrepresented. What limited research has been performed has focused on a few subject domains, including the impact of long-term lifestyle and dietary factors on GM ecology, its maturation during infancy, and the interrelationships between the microbiome, infectious disease, and undernutrition. Recently, international consortia have laid the groundwork for large-scale genomics and microbiome studies on the continent, with a particular interest in the epidemiologic transition to noncommunicable disease. Here, we survey the current landscape of GM scholarship in Africa and propose actionable recommendations to improve research capacity and output.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Africa; global health; microbiome

Mesh:

Year:  2019        PMID: 31178123      PMCID: PMC6764420          DOI: 10.1016/j.tim.2019.05.006

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  97 in total

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Journal:  Nature       Date:  2003-12-18       Impact factor: 49.962

2.  Safety and efficacy of an attenuated vaccine against severe rotavirus gastroenteritis.

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Journal:  N Engl J Med       Date:  2006-01-05       Impact factor: 91.245

Review 3.  Microbes, immunoregulation, and the gut.

Authors:  G A W Rook; L R Brunet
Journal:  Gut       Date:  2005-03       Impact factor: 23.059

4.  Reduced enterobacterial and increased staphylococcal colonization of the infantile bowel: an effect of hygienic lifestyle?

Authors:  Ingegerd Adlerberth; Erika Lindberg; Nils Aberg; Bill Hesselmar; Robert Saalman; Inga-Lisa Strannegård; Agnes E Wold
Journal:  Pediatr Res       Date:  2005-11-30       Impact factor: 3.756

5.  Intestinal colonization with Enterobacteriaceae in Pakistani and Swedish hospital-delivered infants.

Authors:  I Adlerberth; B Carlsson; P de Man; F Jalil; S R Khan; P Larsson; L Mellander; C Svanborg; A E Wold; L A Hanson
Journal:  Acta Paediatr Scand       Date:  1991 Jun-Jul

6.  Probiotics and prebiotics for severe acute malnutrition (PRONUT study): a double-blind efficacy randomised controlled trial in Malawi.

Authors:  Marko Kerac; James Bunn; Andrew Seal; Mariam Thindwa; Andrew Tomkins; Kate Sadler; Paluku Bahwere; Steve Collins
Journal:  Lancet       Date:  2009-07-11       Impact factor: 79.321

7.  Efficacy of human rotavirus vaccine against rotavirus gastroenteritis during the first 2 years of life in European infants: randomised, double-blind controlled study.

Authors:  T Vesikari; A Karvonen; R Prymula; V Schuster; J C Tejedor; R Cohen; F Meurice; H H Han; S Damaso; A Bouckenooghe
Journal:  Lancet       Date:  2007-11-24       Impact factor: 79.321

Review 8.  Bacterial iron homeostasis.

Authors:  Simon C Andrews; Andrea K Robinson; Francisco Rodríguez-Quiñones
Journal:  FEMS Microbiol Rev       Date:  2003-06       Impact factor: 16.408

Review 9.  The human intestinal microbiome: a new frontier of human biology.

Authors:  Masahira Hattori; Todd D Taylor
Journal:  DNA Res       Date:  2009-01-15       Impact factor: 4.458

10.  The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing.

Authors:  Les Dethlefsen; Sue Huse; Mitchell L Sogin; David A Relman
Journal:  PLoS Biol       Date:  2008-11-18       Impact factor: 8.029

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  19 in total

Review 1.  Prevotella diversity, niches and interactions with the human host.

Authors:  Adrian Tett; Edoardo Pasolli; Giulia Masetti; Danilo Ercolini; Nicola Segata
Journal:  Nat Rev Microbiol       Date:  2021-05-28       Impact factor: 60.633

Review 2.  Exploring Bacterial Attributes That Underpin Symbiont Life in the Monogastric Gut.

Authors:  Gerald W Tannock
Journal:  Appl Environ Microbiol       Date:  2022-08-29       Impact factor: 5.005

Review 3.  The Influence of Nutrition on Intestinal Permeability and the Microbiome in Health and Disease.

Authors:  Orsolya Inczefi; Péter Bacsur; Tamás Resál; Csilla Keresztes; Tamás Molnár
Journal:  Front Nutr       Date:  2022-04-25

4.  The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations.

Authors:  Adrian Tett; Kun D Huang; Francesco Asnicar; Hannah Fehlner-Peach; Edoardo Pasolli; Nicolai Karcher; Federica Armanini; Paolo Manghi; Kevin Bonham; Moreno Zolfo; Francesca De Filippis; Cara Magnabosco; Richard Bonneau; John Lusingu; John Amuasi; Karl Reinhard; Thomas Rattei; Fredrik Boulund; Lars Engstrand; Albert Zink; Maria Carmen Collado; Dan R Littman; Daniel Eibach; Danilo Ercolini; Omar Rota-Stabelli; Curtis Huttenhower; Frank Maixner; Nicola Segata
Journal:  Cell Host Microbe       Date:  2019-10-10       Impact factor: 21.023

5.  Analysis of global human gut metagenomes shows that metabolic resilience potential for short-chain fatty acid production is strongly influenced by lifestyle.

Authors:  David K Jacobson; Tanvi P Honap; Andrew T Ozga; Nicolas Meda; Thérèse S Kagoné; Hélène Carabin; Paul Spicer; Raul Y Tito; Alexandra J Obregon-Tito; Luis Marin Reyes; Luzmila Troncoso-Corzo; Emilio Guija-Poma; Krithivasan Sankaranarayanan; Cecil M Lewis
Journal:  Sci Rep       Date:  2021-01-18       Impact factor: 4.379

6.  Dysbiotic Fecal Microbiome in HIV-1 Infected Individuals in Ghana.

Authors:  Prince Kofi Parbie; Taketoshi Mizutani; Aya Ishizaka; Ai Kawana-Tachikawa; Lucky Ronald Runtuwene; Sayuri Seki; Christopher Zaab-Yen Abana; Dennis Kushitor; Evelyn Yayra Bonney; Sampson Badu Ofori; Satoshi Uematsu; Seiya Imoto; Yasumasa Kimura; Hiroshi Kiyono; Koichi Ishikawa; William Kwabena Ampofo; Tetsuro Matano
Journal:  Front Cell Infect Microbiol       Date:  2021-05-18       Impact factor: 5.293

7.  The gut microbiome but not the resistome is associated with urogenital schistosomiasis in preschool-aged children.

Authors:  Derick N M Osakunor; Patrick Munk; Takafira Mduluza; Thomas N Petersen; Christian Brinch; Alasdair Ivens; Theresa Chimponda; Seth A Amanfo; Janice Murray; Mark E J Woolhouse; Frank M Aarestrup; Francisca Mutapi
Journal:  Commun Biol       Date:  2020-04-02

8.  Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species.

Authors:  Serena Manara; Francesco Asnicar; Francesco Beghini; Davide Bazzani; Fabio Cumbo; Moreno Zolfo; Eleonora Nigro; Nicolai Karcher; Paolo Manghi; Marisa Isabell Metzger; Edoardo Pasolli; Nicola Segata
Journal:  Genome Biol       Date:  2019-12-28       Impact factor: 13.583

9.  Gut microbiome profiling of a rural and urban South African cohort reveals biomarkers of a population in lifestyle transition.

Authors:  O H Oduaran; F B Tamburini; V Sahibdeen; R Brewster; F X Gómez-Olivé; K Kahn; S A Norris; S M Tollman; R Twine; A N Wade; R G Wagner; Z Lombard; A S Bhatt; S Hazelhurst
Journal:  BMC Microbiol       Date:  2020-10-31       Impact factor: 3.605

10.  Functional diversity of microbial ecologies estimated from ancient human coprolites and dental calculus.

Authors:  David K Jacobson; Tanvi P Honap; Cara Monroe; Justin Lund; Brett A Houk; Anna C Novotny; Cynthia Robin; Elisabetta Marini; Cecil M Lewis
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-10-05       Impact factor: 6.237

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