Literature DB >> 29016805

Dissecting human gliomas by single-cell RNA sequencing.

Itay Tirosh1, Mario L Suvà1,2,3.   

Abstract

Diffuse gliomas are the most common human primary brain tumors and remain incurable. They are complex entities in which diverse genetic and nongenetic effects determine tumor biology and clinical course. Our current understanding of gliomas in patients is primarily based on genomic and transcriptomic methods that have profiled them as bulk, providing critical information yet masking the diversity of cells within each tumor. Recent advances in single-cell DNA and RNA profiling have paved the way to studying tumors at cellular resolution. Here, we review initial studies deploying single-cell analysis in clinical glioma samples, with a focus on RNA expression profiling. We highlight how these studies provide new insights into glioma biology, tumor heterogeneity, cancer cell lineages, cancer stem cell programs, the tumor microenvironment, and glioma classification.
© The Author(s) 2017. Published by Oxford University Press on behalf of the Society for Neuro-Oncology. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  diffuse gliomas; heterogeneity; single-cell RNA sequencing

Mesh:

Year:  2018        PMID: 29016805      PMCID: PMC5761500          DOI: 10.1093/neuonc/nox126

Source DB:  PubMed          Journal:  Neuro Oncol        ISSN: 1522-8517            Impact factor:   12.300


  53 in total

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Journal:  Cell Stem Cell       Date:  2010-05-07       Impact factor: 24.633

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Journal:  Mol Cell       Date:  2017-02-16       Impact factor: 17.970

4.  Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons.

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Review 5.  The 2016 World Health Organization Classification of Tumors of the Central Nervous System: a summary.

Authors:  David N Louis; Arie Perry; Guido Reifenberger; Andreas von Deimling; Dominique Figarella-Branger; Webster K Cavenee; Hiroko Ohgaki; Otmar D Wiestler; Paul Kleihues; David W Ellison
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6.  De-repression of PDGFRβ transcription promotes acquired resistance to EGFR tyrosine kinase inhibitors in glioblastoma patients.

Authors:  David Akhavan; Alexandra L Pourzia; Alex A Nourian; Kevin J Williams; David Nathanson; Ivan Babic; Genaro R Villa; Kazuhiro Tanaka; Ali Nael; Huijun Yang; Julie Dang; Harry V Vinters; William H Yong; Mitchell Flagg; Fuyuhiko Tamanoi; Takashi Sasayama; C David James; Harley I Kornblum; Tim F Cloughesy; Webster K Cavenee; Steven J Bensinger; Paul S Mischel
Journal:  Cancer Discov       Date:  2013-03-26       Impact factor: 39.397

7.  Glioblastoma-infiltrated innate immune cells resemble M0 macrophage phenotype.

Authors:  Konrad Gabrusiewicz; Benjamin Rodriguez; Jun Wei; Yuuri Hashimoto; Luke M Healy; Sourindra N Maiti; Ginu Thomas; Shouhao Zhou; Qianghu Wang; Ahmed Elakkad; Brandon D Liebelt; Nasser K Yaghi; Ravesanker Ezhilarasan; Neal Huang; Jeffrey S Weinberg; Sujit S Prabhu; Ganesh Rao; Raymond Sawaya; Lauren A Langford; Janet M Bruner; Gregory N Fuller; Amit Bar-Or; Wei Li; Rivka R Colen; Michael A Curran; Krishna P Bhat; Jack P Antel; Laurence J Cooper; Erik P Sulman; Amy B Heimberger
Journal:  JCI Insight       Date:  2016-02-25

8.  EGFR variant heterogeneity in glioblastoma resolved through single-nucleus sequencing.

Authors:  Joshua M Francis; Cheng-Zhong Zhang; Cecile L Maire; Joonil Jung; Veronica E Manzo; Viktor A Adalsteinsson; Heather Homer; Sam Haidar; Brendan Blumenstiel; Chandra Sekhar Pedamallu; Azra H Ligon; J Christopher Love; Matthew Meyerson; Keith L Ligon
Journal:  Cancer Discov       Date:  2014-06-03       Impact factor: 39.397

9.  EGFR gene amplification--rearrangement in human glioblastomas.

Authors:  K Schwechheimer; S Huang; W K Cavenee
Journal:  Int J Cancer       Date:  1995-07-17       Impact factor: 7.396

10.  A restricted cell population propagates glioblastoma growth after chemotherapy.

Authors:  Jian Chen; Yanjiao Li; Tzong-Shiue Yu; Renée M McKay; Dennis K Burns; Steven G Kernie; Luis F Parada
Journal:  Nature       Date:  2012-08-23       Impact factor: 49.962

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  25 in total

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Journal:  Cell       Date:  2019-05-30       Impact factor: 41.582

Review 2.  Developmental origins and oncogenic pathways in malignant brain tumors.

Authors:  Q Richard Lu; Lily Qian; Xianyao Zhou
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2019-04-03       Impact factor: 5.814

3.  Targeting pyrimidine metabolism for glioblastoma therapy.

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Journal:  Neuro Oncol       Date:  2020-02-20       Impact factor: 12.300

4.  Tunneling nanotubes: A bridge for heterogeneity in glioblastoma and a new therapeutic target?

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Journal:  Cancer Rep (Hoboken)       Date:  2019-05-08

Review 5.  Beyond the message: advantages of snapshot proteomics with single-cell mass cytometry in solid tumors.

Authors:  Akshitkumar M Mistry; Allison R Greenplate; Rebecca A Ihrie; Jonathan M Irish
Journal:  FEBS J       Date:  2019-01-07       Impact factor: 5.542

6.  Advancement of Single-Cell Sequencing in Medulloblastoma.

Authors:  Deepanshu Verma; Namyashree Nayak; Ashuthosh Singh; Ashutosh Kumar Singh; Neha Garg
Journal:  Methods Mol Biol       Date:  2022

Review 7.  Single-Cell RNA-Sequencing in Glioma.

Authors:  Eli Johnson; Katherine L Dickerson; Ian D Connolly; Melanie Hayden Gephart
Journal:  Curr Oncol Rep       Date:  2018-04-10       Impact factor: 5.075

8.  Genetic Hallmarks and Heterogeneity of Glioblastoma in the Single-Cell Omics Era.

Authors:  Andrea Degl'Innocenti; Nicoletta di Leo; Gianni Ciofani
Journal:  Adv Ther (Weinh)       Date:  2019-12-01

9.  A multiparametric pharmacogenomic strategy for drug repositioning predicts therapeutic efficacy for glioblastoma cell lines.

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Journal:  Neurooncol Adv       Date:  2021-12-31

Review 10.  Imaging of the glioma microenvironment by TSPO PET.

Authors:  Bastian Zinnhardt; Federico Roncaroli; Claudia Foray; Erjon Agushi; Bahiya Osrah; Gaëlle Hugon; Andreas H Jacobs; Alexandra Winkeler
Journal:  Eur J Nucl Med Mol Imaging       Date:  2021-03-15       Impact factor: 9.236

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