Literature DB >> 28994776

Single-molecule Manipulation of G-quadruplexes by Magnetic Tweezers.

Huijuan You1, Shimin Le2, Hu Chen3, Linyan Qin4, Jie Yan5.   

Abstract

Non-canonical nucleic acid secondary structure G-quadruplexes (G4) are involved in diverse cellular processes, such as DNA replication, transcription, RNA processing, and telomere elongation. During these processes, various proteins bind and resolve G4 structures to perform their function. As the function of G4 often depends on the stability of its folded structure, it is important to investigate how G4 binding proteins regulate the stability of G4. This work presents a method to manipulate single G4 molecules using magnetic tweezers, which enables studies of the regulation of G4 binding proteins on a single G4 molecule in real time. In general, this method is suitable for a wide scope of applications in studies for proteins/ligands interactions and regulations on various DNA or RNA secondary structures.

Mesh:

Year:  2017        PMID: 28994776      PMCID: PMC5752271          DOI: 10.3791/56328

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  29 in total

1.  Near-field-magnetic-tweezer manipulation of single DNA molecules.

Authors:  Jie Yan; Dunja Skoko; John F Marko
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-07-12

2.  Quadruplex Nucleic Acids as Novel Therapeutic Targets.

Authors:  Stephen Neidle
Journal:  J Med Chem       Date:  2016-02-16       Impact factor: 7.446

Review 3.  Non-B DNA conformations, mutagenesis and disease.

Authors:  Robert D Wells
Journal:  Trends Biochem Sci       Date:  2007-05-09       Impact factor: 13.807

Review 4.  Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy.

Authors:  Keir C Neuman; Attila Nagy
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

5.  Stability and kinetics of c-MYC promoter G-quadruplexes studied by single-molecule manipulation.

Authors:  Huijuan You; Jingyuan Wu; Fangwei Shao; Jie Yan
Journal:  J Am Chem Soc       Date:  2015-02-13       Impact factor: 15.419

6.  RHAU helicase stabilizes G4 in its nucleotide-free state and destabilizes G4 upon ATP hydrolysis.

Authors:  Huijuan You; Simon Lattmann; Daniela Rhodes; Jie Yan
Journal:  Nucleic Acids Res       Date:  2016-10-05       Impact factor: 16.971

7.  Telomere- and telomerase-interacting protein that unfolds telomere G-quadruplex and promotes telomere extension in mammalian cells.

Authors:  Feng Wang; Ming-liang Tang; Zhi-xiong Zeng; Ren-yi Wu; Yong Xue; Yu-hua Hao; Dai-wen Pang; Yong Zhao; Zheng Tan
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-26       Impact factor: 11.205

Review 8.  Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?

Authors:  Shankar Balasubramanian; Laurence H Hurley; Stephen Neidle
Journal:  Nat Rev Drug Discov       Date:  2011-04       Impact factor: 84.694

9.  Two distinct overstretched DNA states.

Authors:  Hongxia Fu; Hu Chen; John F Marko; Jie Yan
Journal:  Nucleic Acids Res       Date:  2010-04-30       Impact factor: 16.971

Review 10.  G-quadruplexes and helicases.

Authors:  Oscar Mendoza; Anne Bourdoncle; Jean-Baptiste Boulé; Robert M Brosh; Jean-Louis Mergny
Journal:  Nucleic Acids Res       Date:  2016-02-15       Impact factor: 16.971

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  2 in total

1.  Folding/unfolding kinetics of G-quadruplexes upstream of the P1 promoter of the human BCL-2 oncogene.

Authors:  Yuanlei Cheng; Qingnan Tang; Yutong Li; Yashuo Zhang; Chuyuan Zhao; Jie Yan; Huijuan You
Journal:  J Biol Chem       Date:  2019-02-20       Impact factor: 5.157

2.  Single-Molecule Mechanical Analysis of Strand Invasion in Human Telomere DNA.

Authors:  Terren R Chang; Xi Long; Shankar Shastry; Joseph W Parks; Michael D Stone
Journal:  Biochemistry       Date:  2022-07-19       Impact factor: 3.321

  2 in total

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