Literature DB >> 28981077

Cryo-electron microscopy snapshots of the spliceosome: structural insights into a dynamic ribonucleoprotein machine.

Sebastian M Fica1, Kiyoshi Nagai1.   

Abstract

The spliceosome excises introns from pre-messenger RNAs using an RNA-based active site that is cradled by a dynamic protein scaffold. A recent revolution in cryo-electron microscopy (cryo-EM) has led to near-atomic-resolution structures of key spliceosome complexes that provide insight into the mechanism of activation, splice site positioning, catalysis, protein rearrangements and ATPase-mediated dynamics of the active site. The cryo-EM structures rationalize decades of observations from genetic and biochemical studies and provide a molecular framework for future functional studies.

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Mesh:

Year:  2017        PMID: 28981077      PMCID: PMC6386135          DOI: 10.1038/nsmb.3463

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  100 in total

1.  An RNA switch at the 5' splice site requires ATP and the DEAD box protein Prp28p.

Authors:  J P Staley; C Guthrie
Journal:  Mol Cell       Date:  1999-01       Impact factor: 17.970

2.  A novel base-pairing interaction between U2 and U6 snRNAs suggests a mechanism for the catalytic activation of the spliceosome.

Authors:  H D Madhani; C Guthrie
Journal:  Cell       Date:  1992-11-27       Impact factor: 41.582

3.  The Prp19p-associated complex in spliceosome activation.

Authors:  Shih-Peng Chan; Der-I Kao; Wei-Yü Tsai; Soo-Chen Cheng
Journal:  Science       Date:  2003-09-11       Impact factor: 47.728

4.  Functional interactions of Prp8 with both splice sites at the spliceosomal catalytic center.

Authors:  M Siatecka; J L Reyes; M M Konarska
Journal:  Genes Dev       Date:  1999-08-01       Impact factor: 11.361

5.  Allele-specific genetic interactions between Prp8 and RNA active site residues suggest a function for Prp8 at the catalytic core of the spliceosome.

Authors:  C A Collins; C Guthrie
Journal:  Genes Dev       Date:  1999-08-01       Impact factor: 11.361

6.  Metal-ion coordination by U6 small nuclear RNA contributes to catalysis in the spliceosome.

Authors:  S L Yean; G Wuenschell; J Termini; R J Lin
Journal:  Nature       Date:  2000-12-14       Impact factor: 49.962

7.  The C-terminal region of hPrp8 interacts with the conserved GU dinucleotide at the 5' splice site.

Authors:  J L Reyes; E H Gustafson; H R Luo; M J Moore; M M Konarska
Journal:  RNA       Date:  1999-02       Impact factor: 4.942

8.  Characterization of interactions among the Cef1p-Prp19p-associated splicing complex.

Authors:  Melanie D Ohi; Kathleen L Gould
Journal:  RNA       Date:  2002-06       Impact factor: 4.942

9.  How Slu7 and Prp18 cooperate in the second step of yeast pre-mRNA splicing.

Authors:  Shelly-Ann James; William Turner; Beate Schwer
Journal:  RNA       Date:  2002-08       Impact factor: 4.942

10.  A conformational rearrangement in the spliceosome is dependent on PRP16 and ATP hydrolysis.

Authors:  B Schwer; C Guthrie
Journal:  EMBO J       Date:  1992-12       Impact factor: 11.598

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  68 in total

1.  An SMU Splicing Factor Complex Within Nuclear Speckles Contributes to Magnesium Homeostasis in Arabidopsis.

Authors:  Zhihang Feng; Hiroshi Nagao; Baohai Li; Naoyuki Sotta; Yusuke Shikanai; Katsushi Yamaguchi; Shuji Shigenobu; Takehiro Kamiya; Toru Fujiwara
Journal:  Plant Physiol       Date:  2020-06-29       Impact factor: 8.340

2.  An Allosteric Network for Spliceosome Activation Revealed by High-Throughput Suppressor Analysis in Saccharomyces cerevisiae.

Authors:  David A Brow
Journal:  Genetics       Date:  2019-03-21       Impact factor: 4.562

Review 3.  Understanding the mechanistic basis of non-coding RNA through molecular dynamics simulations.

Authors:  Giulia Palermo; Lorenzo Casalino; Alessandra Magistrato; J Andrew McCammon
Journal:  J Struct Biol       Date:  2019-03-15       Impact factor: 2.867

Review 4.  Group II Intron RNPs and Reverse Transcriptases: From Retroelements to Research Tools.

Authors:  Marlene Belfort; Alan M Lambowitz
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-04-01       Impact factor: 10.005

5.  A U2-snRNP-independent role of SF3b in promoting mRNA export.

Authors:  Ke Wang; Changping Yin; Xian Du; Suli Chen; Jianshu Wang; Li Zhang; Lantian Wang; Yong Yu; Binkai Chi; Min Shi; Changshou Wang; Robin Reed; Yu Zhou; Jing Huang; Hong Cheng
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-28       Impact factor: 11.205

6.  All-atom simulations disentangle the functional dynamics underlying gene maturation in the intron lariat spliceosome.

Authors:  Lorenzo Casalino; Giulia Palermo; Angelo Spinello; Ursula Rothlisberger; Alessandra Magistrato
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-11       Impact factor: 11.205

Review 7.  Structural Basis of Nuclear pre-mRNA Splicing: Lessons from Yeast.

Authors:  Clemens Plaschka; Andrew J Newman; Kiyoshi Nagai
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-05-01       Impact factor: 10.005

Review 8.  The roles of structural dynamics in the cellular functions of RNAs.

Authors:  Laura R Ganser; Megan L Kelly; Daniel Herschlag; Hashim M Al-Hashimi
Journal:  Nat Rev Mol Cell Biol       Date:  2019-08       Impact factor: 94.444

9.  Spliceosome Profiling Visualizes Operations of a Dynamic RNP at Nucleotide Resolution.

Authors:  Jordan E Burke; Adam D Longhurst; Daria Merkurjev; Jade Sales-Lee; Beiduo Rao; James J Moresco; John R Yates; Jingyi Jessica Li; Hiten D Madhani
Journal:  Cell       Date:  2018-05-03       Impact factor: 41.582

10.  Aberrant RNA Splicing in Cancer.

Authors:  Luisa Escobar-Hoyos; Katherine Knorr; Omar Abdel-Wahab
Journal:  Annu Rev Cancer Biol       Date:  2018-11-28
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