Literature DB >> 30765413

Structural Basis of Nuclear pre-mRNA Splicing: Lessons from Yeast.

Clemens Plaschka1, Andrew J Newman1, Kiyoshi Nagai1.   

Abstract

Noncoding introns are removed from nuclear precursor messenger RNA (pre-mRNA) in a two-step phosphoryl transfer reaction by the spliceosome, a dynamic multimegadalton enzyme. Cryo-electron microscopy (cryo-EM) structures of the Saccharomyces cerevisiae spliceosome were recently determined in eight key states. Combined with the wealth of available genetic and biochemical data, these structures have revealed new insights into the mechanisms of spliceosome assembly, activation, catalysis, and disassembly. The structures show how a single RNA catalytic center forms during activation and accomplishes both steps of the splicing reaction. The structures reveal how spliceosomal helicases remodel the spliceosome for active site formation, substrate docking, reaction product undocking, and spliceosome disassembly and how they facilitate splice site proofreading. Although human spliceosomes contain additional proteins, their cryo-EM structures suggest that the underlying mechanism is conserved across all eukaryotes. In this review, we summarize the current structural understanding of pre-mRNA splicing.
Copyright © 2019 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2019        PMID: 30765413      PMCID: PMC6496352          DOI: 10.1101/cshperspect.a032391

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  84 in total

1.  The 3.8 Å structure of the U4/U6.U5 tri-snRNP: Insights into spliceosome assembly and catalysis.

Authors:  Ruixue Wan; Chuangye Yan; Rui Bai; Lin Wang; Min Huang; Catherine C L Wong; Yigong Shi
Journal:  Science       Date:  2016-01-07       Impact factor: 47.728

2.  Sad1 counteracts Brr2-mediated dissociation of U4/U6.U5 in tri-snRNP homeostasis.

Authors:  Yu-Hsin Huang; Che-Sheng Chung; Der-I Kao; Tzu-Chung Kao; Soo-Chen Cheng
Journal:  Mol Cell Biol       Date:  2013-11-04       Impact factor: 4.272

3.  An amazing sequence arrangement at the 5' ends of adenovirus 2 messenger RNA.

Authors:  L T Chow; R E Gelinas; T R Broker; R J Roberts
Journal:  Cell       Date:  1977-09       Impact factor: 41.582

4.  The human U5-200kD DEXH-box protein unwinds U4/U6 RNA duplices in vitro.

Authors:  B Laggerbauer; T Achsel; R Lührmann
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-14       Impact factor: 11.205

5.  The "spliceosome": yeast pre-messenger RNA associates with a 40S complex in a splicing-dependent reaction.

Authors:  E Brody; J Abelson
Journal:  Science       Date:  1985-05-24       Impact factor: 47.728

6.  An evolutionarily conserved U5 snRNP-specific protein is a GTP-binding factor closely related to the ribosomal translocase EF-2.

Authors:  P Fabrizio; B Laggerbauer; J Lauber; W S Lane; R Lührmann
Journal:  EMBO J       Date:  1997-07-01       Impact factor: 11.598

7.  A comprehensive biochemical and genetic analysis of the yeast U1 snRNP reveals five novel proteins.

Authors:  A Gottschalk; J Tang; O Puig; J Salgado; G Neubauer; H V Colot; M Mann; B Séraphin; M Rosbash; R Lührmann; P Fabrizio
Journal:  RNA       Date:  1998-04       Impact factor: 4.942

Review 8.  Cryo-EM Studies of Pre-mRNA Splicing: From Sample Preparation to Model Visualization.

Authors:  Max E Wilkinson; Pei-Chun Lin; Clemens Plaschka; Kiyoshi Nagai
Journal:  Annu Rev Biophys       Date:  2018-03-01       Impact factor: 12.981

9.  Crystal structure of human spliceosomal U1 snRNP at 5.5 A resolution.

Authors:  Daniel A Pomeranz Krummel; Chris Oubridge; Adelaine K W Leung; Jade Li; Kiyoshi Nagai
Journal:  Nature       Date:  2009-03-26       Impact factor: 49.962

10.  Structure of a pre-catalytic spliceosome.

Authors:  Clemens Plaschka; Pei-Chun Lin; Kiyoshi Nagai
Journal:  Nature       Date:  2017-05-22       Impact factor: 49.962

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  15 in total

Review 1.  Altered RNA Processing in Cancer Pathogenesis and Therapy.

Authors:  Esther A Obeng; Connor Stewart; Omar Abdel-Wahab
Journal:  Cancer Discov       Date:  2019-10-14       Impact factor: 39.397

Review 2.  Structural and functional modularity of the U2 snRNP in pre-mRNA splicing.

Authors:  Clarisse van der Feltz; Aaron A Hoskins
Journal:  Crit Rev Biochem Mol Biol       Date:  2019-11-20       Impact factor: 8.250

3.  Network theory reveals principles of spliceosome structure and dynamics.

Authors:  Harpreet Kaur; Clarisse van der Feltz; Yichen Sun; Aaron A Hoskins
Journal:  Structure       Date:  2021-09-29       Impact factor: 5.006

4.  Engineering Crystal Packing in RNA-Protein Complexes II: A Historical Perspective from the Structural Studies of the Spliceosome.

Authors:  Adelaine Kwun-Wai Leung; Yasushi Kondo; Daniel A Pomeranz Krummel; Jade Li; Stephen R Price; Anne-Marie M van Roon
Journal:  Crystals (Basel)       Date:  2021-08-15       Impact factor: 2.589

5.  Mechanism of 5' splice site transfer for human spliceosome activation.

Authors:  Clément Charenton; Max E Wilkinson; Kiyoshi Nagai
Journal:  Science       Date:  2019-04-11       Impact factor: 47.728

6.  Unraveling the Molecular Mechanism of Pre-mRNA Splicing From Multi-Scale Simulations.

Authors:  Lorenzo Casalino; Alessandra Magistrato
Journal:  Front Mol Biosci       Date:  2019-08-06

7.  Identification of proteins associated with splicing factors Ntr1, Ntr2, Brr2 and Gpl1 in the fission yeast Schizosaccharomyces pombe.

Authors:  Ingrid Cipakova; Matus Jurcik; Veronika Rubintova; Marianna Borbova; Barbora Mikolaskova; Jan Jurcik; Jana Bellova; Peter Barath; Juraj Gregan; Lubos Cipak
Journal:  Cell Cycle       Date:  2019-06-20       Impact factor: 4.534

8.  Dynamic Supraspliceosomes Are Assembled on Different Transcripts Regardless of Their Intron Number and Splicing State.

Authors:  Naama Sebbag-Sznajder; Yehuda Brody; Hodaya Hochberg-Laufer; Yaron Shav-Tal; Joseph Sperling; Ruth Sperling
Journal:  Front Genet       Date:  2020-05-15       Impact factor: 4.599

9.  psiCLIP reveals dynamic RNA binding by DEAH-box helicases before and after exon ligation.

Authors:  Lisa M Strittmatter; Charlotte Capitanchik; Andrew J Newman; Martina Hallegger; Christine M Norman; Sebastian M Fica; Chris Oubridge; Nicholas M Luscombe; Jernej Ule; Kiyoshi Nagai
Journal:  Nat Commun       Date:  2021-03-05       Impact factor: 14.919

10.  A human postcatalytic spliceosome structure reveals essential roles of metazoan factors for exon ligation.

Authors:  Sebastian M Fica; Chris Oubridge; Max E Wilkinson; Andrew J Newman; Kiyoshi Nagai
Journal:  Science       Date:  2019-01-31       Impact factor: 47.728

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