Literature DB >> 28973882

Speed regulation of genetic cascades allows for evolvability in the body plan specification of insects.

Xin Zhu1, Heike Rudolf2, Lucas Healey2, Paul François3, Susan J Brown1, Martin Klingler2, Ezzat El-Sherif4.   

Abstract

During the anterior-posterior fate specification of insects, anterior fates arise in a nonelongating tissue (called the "blastoderm"), and posterior fates arise in an elongating tissue (called the "germband"). However, insects differ widely in the extent to which anterior-posterior fates are specified in the blastoderm versus the germband. Here we present a model in which patterning in both the blastoderm and germband of the beetle Tribolium castaneum is based on the same flexible mechanism: a gradient that modulates the speed of a genetic cascade of gap genes, resulting in the induction of sequential kinematic waves of gap gene expression. The mechanism is flexible and capable of patterning both elongating and nonelongating tissues, and hence converting blastodermal to germband fates and vice versa. Using RNAi perturbations, we found that blastodermal fates could be shifted to the germband, and germband fates could be generated in a blastoderm-like morphology. We also suggest a molecular mechanism underlying our model, in which gradient levels regulate the switch between two enhancers: One enhancer is responsible for sequential gene activation, and the other is responsible for freezing temporal rhythms into spatial patterns. This model is consistent with findings in Drosophila melanogaster, where gap genes were found to be regulated by two nonredundant "shadow" enhancers.

Entities:  

Keywords:  cascade; clock-and-wavefront; enhancer switching; evolution; kinematic waves

Mesh:

Substances:

Year:  2017        PMID: 28973882      PMCID: PMC5642680          DOI: 10.1073/pnas.1702478114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  65 in total

1.  Delimiting the conserved features of hunchback function for the trunk organization of insects.

Authors:  Henrique Marques-Souza; Manuel Aranda; Diethard Tautz
Journal:  Development       Date:  2008-01-23       Impact factor: 6.868

2.  Early and late periodic patterns of even skipped expression are controlled by distinct regulatory elements that respond to different spatial cues.

Authors:  T Goto; P Macdonald; T Maniatis
Journal:  Cell       Date:  1989-05-05       Impact factor: 41.582

3.  Asymmetrically expressed axin required for anterior development in Tribolium.

Authors:  Jinping Fu; Nico Posnien; Renata Bolognesi; Tamara D Fischer; Parker Rayl; Georg Oberhofer; Peter Kitzmann; Susan J Brown; Gregor Bucher
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-02       Impact factor: 11.205

4.  Evidence for an expansion-based temporal Shh gradient in specifying vertebrate digit identities.

Authors:  Brian D Harfe; Paul J Scherz; Sahar Nissim; Hua Tian; Andrew P McMahon; Clifford J Tabin
Journal:  Cell       Date:  2004-08-20       Impact factor: 41.582

5.  Multiple Wnt genes are required for segmentation in the short-germ embryo of Tribolium castaneum.

Authors:  Renata Bolognesi; Laila Farzana; Tamara D Fischer; Susan J Brown
Journal:  Curr Biol       Date:  2008-10-28       Impact factor: 10.834

Review 6.  It takes time to make a pinky: unexpected insights into how SHH patterns vertebrate digits.

Authors:  Rolf Zeller
Journal:  Sci STKE       Date:  2004-11-16

7.  Grasshopper hunchback expression reveals conserved and novel aspects of axis formation and segmentation.

Authors:  N H Patel; D C Hayward; S Lall; N R Pirkl; D DiPietro; E E Ball
Journal:  Development       Date:  2001-09       Impact factor: 6.868

8.  A theoretical framework for the regulation of Shh morphogen-controlled gene expression.

Authors:  Michael Cohen; Karen M Page; Ruben Perez-Carrasco; Chris P Barnes; James Briscoe
Journal:  Development       Date:  2014-10       Impact factor: 6.868

9.  Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks.

Authors:  Enrico Cannavò; Pierre Khoueiry; David A Garfield; Paul Geeleher; Thomas Zichner; E Hilary Gustafson; Lucia Ciglar; Jan O Korbel; Eileen E M Furlong
Journal:  Curr Biol       Date:  2015-12-10       Impact factor: 10.834

10.  Canalization of gene expression and domain shifts in the Drosophila blastoderm by dynamical attractors.

Authors:  Svetlana Surkova; Alexander V Spirov; Vitaly V Gursky; Hilde Janssens; Ah-Ram Kim; Ovidiu Radulescu; Carlos E Vanario-Alonso; David H Sharp; Maria Samsonova; John Reinitz
Journal:  PLoS Comput Biol       Date:  2009-03-13       Impact factor: 4.475

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  14 in total

Review 1.  Towards a physical understanding of developmental patterning.

Authors:  Jose Negrete; Andrew C Oates
Journal:  Nat Rev Genet       Date:  2021-05-10       Impact factor: 53.242

2.  The mlpt/Ubr3/Svb module comprises an ancient developmental switch for embryonic patterning.

Authors:  Suparna Ray; Miriam I Rosenberg; Hélène Chanut-Delalande; Amélie Decaras; Barbara Schwertner; William Toubiana; Tzach Auman; Irene Schnellhammer; Matthias Teuscher; Philippe Valenti; Abderrahman Khila; Martin Klingler; François Payre
Journal:  Elife       Date:  2019-03-21       Impact factor: 8.140

3.  Anterior-posterior patterning of segments in Anopheles stephensi offers insights into the transition from sequential to simultaneous segmentation in holometabolous insects.

Authors:  Alys M Cheatle Jarvela; Catherine S Trelstad; Leslie Pick
Journal:  J Exp Zool B Mol Dev Evol       Date:  2021-11-03       Impact factor: 2.368

4.  A re-inducible gap gene cascade patterns the anterior-posterior axis of insects in a threshold-free fashion.

Authors:  Alena Boos; Jutta Distler; Heike Rudolf; Martin Klingler; Ezzat El-Sherif
Journal:  Elife       Date:  2018-12-20       Impact factor: 8.140

5.  Modularity, criticality, and evolvability of a developmental gene regulatory network.

Authors:  Berta Verd; Nicholas Am Monk; Johannes Jaeger
Journal:  Elife       Date:  2019-06-06       Impact factor: 8.140

6.  Geometric models for robust encoding of dynamical information into embryonic patterns.

Authors:  Laurent Jutras-Dubé; Ezzat El-Sherif; Paul François
Journal:  Elife       Date:  2020-08-10       Impact factor: 8.713

7.  A damped oscillator imposes temporal order on posterior gap gene expression in Drosophila.

Authors:  Berta Verd; Erik Clark; Karl R Wotton; Hilde Janssens; Eva Jiménez-Guri; Anton Crombach; Johannes Jaeger
Journal:  PLoS Biol       Date:  2018-02-16       Impact factor: 8.029

8.  Growth zone segmentation in the milkweed bug Oncopeltus fasciatus sheds light on the evolution of insect segmentation.

Authors:  Tzach Auman; Ariel D Chipman
Journal:  BMC Evol Biol       Date:  2018-11-28       Impact factor: 3.260

9.  Sox enters the picture.

Authors:  Felix Kaufholz; Natascha Turetzek
Journal:  Elife       Date:  2018-10-01       Impact factor: 8.140

10.  Evidence for the temporal regulation of insect segmentation by a conserved sequence of transcription factors.

Authors:  Erik Clark; Andrew D Peel
Journal:  Development       Date:  2018-05-03       Impact factor: 6.868

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