Literature DB >> 28967912

Histone H3K4 monomethylation catalyzed by Trr and mammalian COMPASS-like proteins at enhancers is dispensable for development and viability.

Ryan Rickels1, Hans-Martin Herz2, Christie C Sze1, Kaixiang Cao1, Marc A Morgan1, Clayton K Collings1, Maria Gause3, Yoh-Hei Takahashi1, Lu Wang1, Emily J Rendleman1, Stacy A Marshall1, Annika Krueger2, Elizabeth T Bartom1, Andrea Piunti1, Edwin R Smith1, Nebiyu A Abshiru4, Neil L Kelleher4, Dale Dorsett3, Ali Shilatifard1,5.   

Abstract

Histone H3 lysine 4 monomethylation (H3K4me1) is an evolutionarily conserved feature of enhancer chromatin catalyzed by the COMPASS-like methyltransferase family, which includes Trr in Drosophila melanogaster and MLL3 (encoded by KMT2C) and MLL4 (encoded by KMT2D) in mammals. Here we demonstrate that Drosophila embryos expressing catalytically deficient Trr eclose and develop to productive adulthood. Parallel experiments with a trr allele that augments enzyme product specificity show that conversion of H3K4me1 at enhancers to H3K4me2 and H3K4me3 is also compatible with life and results in minimal changes in gene expression. Similarly, loss of the catalytic SET domains of MLL3 and MLL4 in mouse embryonic stem cells (mESCs) does not disrupt self-renewal. Drosophila embryos with trr alleles encoding catalytic mutants manifest subtle developmental abnormalities when subjected to temperature stress or altered cohesin levels. Collectively, our findings suggest that animal development can occur in the context of Trr or mammalian COMPASS-like proteins deficient in H3K4 monomethylation activity and point to a possible role for H3K4me1 on cis-regulatory elements in specific settings to fine-tune transcriptional regulation in response to environmental stress.

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Year:  2017        PMID: 28967912      PMCID: PMC5663216          DOI: 10.1038/ng.3965

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  37 in total

1.  Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Authors:  Nathaniel D Heintzman; Rhona K Stuart; Gary Hon; Yutao Fu; Christina W Ching; R David Hawkins; Leah O Barrera; Sara Van Calcar; Chunxu Qu; Keith A Ching; Wei Wang; Zhiping Weng; Roland D Green; Gregory E Crawford; Bing Ren
Journal:  Nat Genet       Date:  2007-02-04       Impact factor: 38.330

Review 2.  Epigenetic balance of gene expression by Polycomb and COMPASS families.

Authors:  Andrea Piunti; Ali Shilatifard
Journal:  Science       Date:  2016-06-03       Impact factor: 47.728

3.  Nipped-B, a Drosophila homologue of chromosomal adherins, participates in activation by remote enhancers in the cut and Ultrabithorax genes.

Authors:  R A Rollins; P Morcillo; D Dorsett
Journal:  Genetics       Date:  1999-06       Impact factor: 4.562

4.  Molecular genetic analysis of the Drosophila trithorax-related gene which encodes a novel SET domain protein.

Authors:  Y Sedkov; J J Benes; J R Berger; K M Riker; S Tillib; R S Jones; A Mazo
Journal:  Mech Dev       Date:  1999-04       Impact factor: 1.882

5.  Enhancer-associated H3K4 monomethylation by Trithorax-related, the Drosophila homolog of mammalian Mll3/Mll4.

Authors:  Hans-Martin Herz; Man Mohan; Alexander S Garruss; Kaiwei Liang; Yoh-Hei Takahashi; Kristen Mickey; Olaf Voets; C Peter Verrijzer; Ali Shilatifard
Journal:  Genes Dev       Date:  2012-11-19       Impact factor: 11.361

6.  Dosage-sensitive regulation of cohesin chromosome binding and dynamics by Nipped-B, Pds5, and Wapl.

Authors:  Maria Gause; Ziva Misulovin; Amy Bilyeu; Dale Dorsett
Journal:  Mol Cell Biol       Date:  2010-08-09       Impact factor: 4.272

7.  Enhancer Control of Transcriptional Bursting.

Authors:  Takashi Fukaya; Bomyi Lim; Michael Levine
Journal:  Cell       Date:  2016-06-09       Impact factor: 41.582

8.  Mll3 and Mll4 Facilitate Enhancer RNA Synthesis and Transcription from Promoters Independently of H3K4 Monomethylation.

Authors:  Kristel M Dorighi; Tomek Swigut; Telmo Henriques; Natarajan V Bhanu; Benjamin S Scruggs; Nataliya Nady; Christopher D Still; Benjamin A Garcia; Karen Adelman; Joanna Wysocka
Journal:  Mol Cell       Date:  2017-05-05       Impact factor: 17.970

Review 9.  Looping back to leap forward: transcription enters a new era.

Authors:  Michael Levine; Claudia Cattoglio; Robert Tjian
Journal:  Cell       Date:  2014-03-27       Impact factor: 41.582

10.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Authors:  Mark D Robinson; Davis J McCarthy; Gordon K Smyth
Journal:  Bioinformatics       Date:  2009-11-11       Impact factor: 6.937

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  73 in total

Review 1.  The Many Roles of Cohesin in Drosophila Gene Transcription.

Authors:  Dale Dorsett
Journal:  Trends Genet       Date:  2019-05-23       Impact factor: 11.639

2.  FBXW7 Triggers Degradation of KMT2D to Favor Growth of Diffuse Large B-cell Lymphoma Cells.

Authors:  Rizwan Saffie; Nan Zhou; Delphine Rolland; Özlem Önder; Venkatesha Basrur; Sydney Campbell; Kathryn E Wellen; Kojo S J Elenitoba-Johnson; Brian C Capell; Luca Busino
Journal:  Cancer Res       Date:  2020-04-29       Impact factor: 12.701

Review 3.  Targeting DNA repair in cancer: current state and novel approaches.

Authors:  Apostolos Klinakis; Dimitris Karagiannis; Theodoros Rampias
Journal:  Cell Mol Life Sci       Date:  2019-10-14       Impact factor: 9.261

Review 4.  Towards a comprehensive catalogue of validated and target-linked human enhancers.

Authors:  Molly Gasperini; Jacob M Tome; Jay Shendure
Journal:  Nat Rev Genet       Date:  2020-01-27       Impact factor: 53.242

Review 5.  Studying Transcriptional Enhancers: The Founder Fallacy, Validation Creep, and Other Biases.

Authors:  Marc S Halfon
Journal:  Trends Genet       Date:  2018-12-13       Impact factor: 11.639

Review 6.  Epigenetic regulation of intestinal stem cell differentiation.

Authors:  Michael P Verzi; Ramesh A Shivdasani
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2020-07-06       Impact factor: 4.052

7.  The Trithorax group protein dMLL3/4 instructs the assembly of the zygotic genome at fertilization.

Authors:  Pedro Prudêncio; Leonardo G Guilgur; João Sobral; Jörg D Becker; Rui Gonçalo Martinho; Paulo Navarro-Costa
Journal:  EMBO Rep       Date:  2018-07-23       Impact factor: 8.807

Review 8.  Eukaryotic core promoters and the functional basis of transcription initiation.

Authors:  Vanja Haberle; Alexander Stark
Journal:  Nat Rev Mol Cell Biol       Date:  2018-10       Impact factor: 94.444

Review 9.  COMPASS Ascending: Emerging clues regarding the roles of MLL3/KMT2C and MLL2/KMT2D proteins in cancer.

Authors:  Richard J Fagan; Andrew K Dingwall
Journal:  Cancer Lett       Date:  2019-05-22       Impact factor: 8.679

10.  Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers.

Authors:  Jian Yan; Shi-An A Chen; Andrea Local; Tristin Liu; Yunjiang Qiu; Kristel M Dorighi; Sebastian Preissl; Chloe M Rivera; Chaochen Wang; Zhen Ye; Kai Ge; Ming Hu; Joanna Wysocka; Bing Ren
Journal:  Cell Res       Date:  2018-01-09       Impact factor: 25.617

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