Literature DB >> 28948359

Evaluation of the inclusion of circular RNAs in mRNA profiling in forensic body fluid identification.

Yaqi Zhang1, Baonian Liu1, Chengchen Shao1, Hongmei Xu1, Aimin Xue1, Ziqin Zhao1, Yiwen Shen2, Qiqun Tang3, Jianhui Xie4.   

Abstract

The use of messenger RNA (mRNA) profiling is considered a promising method in the identification of forensically relevant body fluids which can provide crucial information for reconstructing a potential crime. However, casework samples are usually of limited quantity or have been subjected to degradation, which requires improvement of body fluid identification. Circular RNAs (circRNAs), a class of products from the backsplicing of pre-mRNAs, are shown to have high abundance, remarkable stability, and cell type-specific expression in human cells. In this study, we investigated whether the inclusion of circRNAs in mRNA profiling improve the detection of biomarkers including δ-aminolevulinate synthase 2 (ALAS2) and matrix metallopeptidase 7 (MMP7) in body fluid identification. The major circRNAs of ALAS2 and MMP7 were first identified and primer sets for the simultaneous detection of linear and circular transcripts were developed. The inclusion of circRNAs in mRNA profiling showed improved detection sensitivity and stability of biomarkers revealed by using serial dilutions, mixed samples, and menstrual bloodstains as well as degraded and aged samples. Therefore, the inclusion of circRNAs in mRNA profiling should facilitate the detection of mRNA markers in forensic body fluid identification.

Entities:  

Keywords:  Body fluid identification; Circular RNAs; Sensitivity; Stability; mRNA profiling

Mesh:

Substances:

Year:  2017        PMID: 28948359     DOI: 10.1007/s00414-017-1690-7

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  37 in total

1.  Molecular identification of vaginal fluid by microbial signature.

Authors:  Saverio Giampaoli; Andrea Berti; Federica Valeriani; Gianluca Gianfranceschi; Antonio Piccolella; Laura Buggiotti; Cesare Rapone; Alessio Valentini; Luigi Ripani; Vincenzo Romano Spica
Journal:  Forensic Sci Int Genet       Date:  2012-02-23       Impact factor: 4.882

2.  mRNA profiling for the identification of blood--results of a collaborative EDNAP exercise.

Authors:  C Haas; E Hanson; W Bär; R Banemann; A M Bento; A Berti; E Borges; C Bouakaze; A Carracedo; M Carvalho; A Choma; M Dötsch; M Durianciková; P Hoff-Olsen; C Hohoff; P Johansen; P A Lindenbergh; B Loddenkötter; B Ludes; O Maroñas; N Morling; H Niederstätter; W Parson; G Patel; C Popielarz; E Salata; P M Schneider; T Sijen; B Sviezená; L Zatkalíková; J Ballantyne
Journal:  Forensic Sci Int Genet       Date:  2010-02-06       Impact factor: 4.882

3.  Differentiation of five body fluids from forensic samples by expression analysis of four microRNAs using quantitative PCR.

Authors:  Eva Sauer; Ann-Kathrin Reinke; Cornelius Courts
Journal:  Forensic Sci Int Genet       Date:  2016-02-12       Impact factor: 4.882

Review 4.  Regulation of circRNA biogenesis.

Authors:  Ling-Ling Chen; Li Yang
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

5.  mRNA profiling using a minimum of five mRNA markers per body fluid and a novel scoring method for body fluid identification.

Authors:  Amy D Roeder; Cordula Haas
Journal:  Int J Legal Med       Date:  2012-12-20       Impact factor: 2.686

6.  Identification of gunshots to the head by detection of RNA in backspatter primarily expressed in brain tissue.

Authors:  Constantin Lux; Christian Schyma; Burkhard Madea; Cornelius Courts
Journal:  Forensic Sci Int       Date:  2014-02-07       Impact factor: 2.395

7.  Multiplex mRNA profiling for the identification of body fluids.

Authors:  Jane Juusola; Jack Ballantyne
Journal:  Forensic Sci Int       Date:  2005-08-11       Impact factor: 2.395

8.  Circular RNAs are abundant, conserved, and associated with ALU repeats.

Authors:  William R Jeck; Jessica A Sorrentino; Kai Wang; Michael K Slevin; Christin E Burd; Jinze Liu; William F Marzluff; Norman E Sharpless
Journal:  RNA       Date:  2012-12-18       Impact factor: 4.942

9.  Circular RNAs are a large class of animal RNAs with regulatory potency.

Authors:  Sebastian Memczak; Marvin Jens; Antigoni Elefsinioti; Francesca Torti; Janna Krueger; Agnieszka Rybak; Luisa Maier; Sebastian D Mackowiak; Lea H Gregersen; Mathias Munschauer; Alexander Loewer; Ulrike Ziebold; Markus Landthaler; Christine Kocks; Ferdinand le Noble; Nikolaus Rajewsky
Journal:  Nature       Date:  2013-02-27       Impact factor: 49.962

10.  Complementary sequence-mediated exon circularization.

Authors:  Xiao-Ou Zhang; Hai-Bin Wang; Yang Zhang; Xuhua Lu; Ling-Ling Chen; Li Yang
Journal:  Cell       Date:  2014-09-18       Impact factor: 41.582

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  10 in total

1.  Evaluation of one-step RT-PCR multiplex assay for body fluid identification.

Authors:  Qinrui Yang; Baonian Liu; Yuxiang Zhou; Yining Yao; Zhihan Zhou; Hui Li; Chengchen Shao; Kuan Sun; Hongmei Xu; Qiqun Tang; Yiwen Shen; Jianhui Xie
Journal:  Int J Legal Med       Date:  2021-03-05       Impact factor: 2.686

2.  Evaluating the potential of housekeeping genes, rRNAs, snRNAs, microRNAs and circRNAs as reference genes for the estimation of PMI.

Authors:  Chunyan Tu; Tieshuai Du; Chengchen Shao; Zengjia Liu; Liliang Li; Yiwen Shen
Journal:  Forensic Sci Med Pathol       Date:  2018-04-24       Impact factor: 2.007

3.  Detection and discrimination of seminal fluid using attenuated total reflectance Fourier transform infrared (ATR FT-IR) spectroscopy combined with chemometrics.

Authors:  Sweety Sharma; Rajinder Singh
Journal:  Int J Legal Med       Date:  2019-12-09       Impact factor: 2.686

4.  Establishment of a co-analysis system for personal identification and body fluid identification: a preliminary report.

Authors:  Yuanyuan Xiao; Dezhi Chen; Duo Peng; Zhilong Li; Shengqiu Qu; Ranran Zhang; Guihong Liu; Yazi Zheng; Mengyu Tan; Jiaming Xue; Yimin Zhang; Jing Zhu; Weibo Liang
Journal:  Int J Legal Med       Date:  2022-09-08       Impact factor: 2.791

5.  CircSLC8A1 and circNFIX can be used as auxiliary diagnostic markers for sudden cardiac death caused by acute ischemic heart disease.

Authors:  Meihui Tian; Jiajia Xue; Cuiyun Dai; Enzhu Jiang; Baoli Zhu; Hao Pang
Journal:  Sci Rep       Date:  2021-02-25       Impact factor: 4.379

Review 6.  Circular RNAs in Sudden Cardiac Death Related Diseases: Novel Biomarker for Clinical and Forensic Diagnosis.

Authors:  Meihui Tian; Zhipeng Cao; Hao Pang
Journal:  Molecules       Date:  2021-02-21       Impact factor: 4.411

Review 7.  On the Identification of Body Fluids and Tissues: A Crucial Link in the Investigation and Solution of Crime.

Authors:  Titia Sijen; SallyAnn Harbison
Journal:  Genes (Basel)       Date:  2021-10-28       Impact factor: 4.096

8.  Quantitative analysis of noncoding RNA from paired fresh and formalin-fixed paraffin-embedded brain tissues.

Authors:  Yehui Lv; Shiying Li; Zhihong Li; Ruiyang Tao; Yu Shao; Yijiu Chen
Journal:  Int J Legal Med       Date:  2019-12-01       Impact factor: 2.686

9.  Distinct spectrum of microRNA expression in forensically relevant body fluids and probabilistic discriminant approach.

Authors:  Shuntaro Fujimoto; Sho Manabe; Chie Morimoto; Munetaka Ozeki; Yuya Hamano; Eriko Hirai; Hirokazu Kotani; Keiji Tamaki
Journal:  Sci Rep       Date:  2019-10-04       Impact factor: 4.379

10.  Association between circular RNA expression content and severity of coronary atherosclerosis in human coronary artery.

Authors:  Can Hou; Lingfeng Gu; Yi Guo; Yaqing Zhou; Lei Hua; Jiaxin Chen; Shu He; Sheng Zhang; Qiaowei Jia; Chenhui Zhao; Jing Zhang; Guangxu Xu; Enzhi Jia
Journal:  J Clin Lab Anal       Date:  2020-09-05       Impact factor: 3.124

  10 in total

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