Literature DB >> 28943271

Transmembrane β-barrels: Evolution, folding and energetics.

Deepti Chaturvedi1, Radhakrishnan Mahalakshmi2.   

Abstract

The biogenesis of transmembrane β-barrels (outer membrane proteins, or OMPs) is an elaborate multistep orchestration of the nascent polypeptide with translocases, barrel assembly machinery, and helper chaperone proteins. Several theories exist that describe the mechanism of chaperone-assisted OMP assembly in vivo and unassisted (spontaneous) folding in vitro. Structurally, OMPs of bacterial origin possess even-numbered strands, while mitochondrial β-barrels are even- and odd-stranded. Several underlying similarities between prokaryotic and eukaryotic β-barrels and their folding machinery are known; yet, the link in their evolutionary origin is unclear. While OMPs exhibit diversity in sequence and function, they share similar biophysical attributes and structure. Similarly, it is important to understand the intricate OMP assembly mechanism, particularly in eukaryotic β-barrels that have evolved to perform more complex functions. Here, we deliberate known facets of β-barrel evolution, folding, and stability, and attempt to highlight outstanding questions in β-barrel biogenesis and proteostasis.
Copyright © 2017 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Assisted folding; Barrel assembly machinery; Biogenesis; Energetics; Kinetic control; Mitochondrial outer membrane proteins; OMP

Mesh:

Substances:

Year:  2017        PMID: 28943271      PMCID: PMC7115949          DOI: 10.1016/j.bbamem.2017.09.020

Source DB:  PubMed          Journal:  Biochim Biophys Acta Biomembr        ISSN: 0005-2736            Impact factor:   3.747


  163 in total

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2.  Crystal structure of the drug discharge outer membrane protein, OprM, of Pseudomonas aeruginosa: dual modes of membrane anchoring and occluded cavity end.

Authors:  Hiroyuki Akama; Misa Kanemaki; Masato Yoshimura; Tomitake Tsukihara; Tomoe Kashiwagi; Hiroshi Yoneyama; Shin-ichiro Narita; Atsushi Nakagawa; Taiji Nakae
Journal:  J Biol Chem       Date:  2004-10-26       Impact factor: 5.157

3.  Gene duplication of the eight-stranded beta-barrel OmpX produces a functional pore: a scenario for the evolution of transmembrane beta-barrels.

Authors:  Thomas Arnold; Melissa Poynor; Stephan Nussberger; Andrei N Lupas; Dirk Linke
Journal:  J Mol Biol       Date:  2006-12-16       Impact factor: 5.469

4.  Dissecting membrane insertion of mitochondrial beta-barrel proteins.

Authors:  Stephan Kutik; Diana Stojanovski; Lars Becker; Thomas Becker; Michael Meinecke; Vivien Krüger; Claudia Prinz; Chris Meisinger; Bernard Guiard; Richard Wagner; Nikolaus Pfanner; Nils Wiedemann
Journal:  Cell       Date:  2008-03-21       Impact factor: 41.582

5.  Evolution of outer membrane beta-barrels from an ancestral beta beta hairpin.

Authors:  M Remmert; A Biegert; D Linke; A N Lupas; J Söding
Journal:  Mol Biol Evol       Date:  2010-01-27       Impact factor: 16.240

6.  The transition state for folding of an outer membrane protein.

Authors:  Gerard H M Huysmans; Stephen A Baldwin; David J Brockwell; Sheena E Radford
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-01       Impact factor: 11.205

7.  SurA assists the folding of Escherichia coli outer membrane proteins.

Authors:  S W Lazar; R Kolter
Journal:  J Bacteriol       Date:  1996-03       Impact factor: 3.490

8.  Juxtamembrane tryptophans have distinct roles in defining the OmpX barrel-micelle boundary and facilitating protein-micelle association.

Authors:  Deepti Chaturvedi; Radhakrishnan Mahalakshmi
Journal:  FEBS Lett       Date:  2014-11-28       Impact factor: 4.124

Review 9.  Structural biology of membrane-intrinsic beta-barrel enzymes: sentinels of the bacterial outer membrane.

Authors:  Russell E Bishop
Journal:  Biochim Biophys Acta       Date:  2007-08-11

10.  Sam37 is crucial for formation of the mitochondrial TOM-SAM supercomplex, thereby promoting β-barrel biogenesis.

Authors:  Lena-Sophie Wenz; Lars Ellenrieder; Jian Qiu; Maria Bohnert; Nicole Zufall; Martin van der Laan; Nikolaus Pfanner; Nils Wiedemann; Thomas Becker
Journal:  J Cell Biol       Date:  2015-09-28       Impact factor: 10.539

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  21 in total

1.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

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Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

2.  Structure Determination of Membrane Proteins Using X-Ray Crystallography.

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Journal:  Methods Mol Biol       Date:  2021

3.  SurA is a cryptically grooved chaperone that expands unfolded outer membrane proteins.

Authors:  Dagan C Marx; Ashlee M Plummer; Anneliese M Faustino; Taylor Devlin; Michaela A Roskopf; Mathis J Leblanc; Henry J Lessen; Barbara T Amann; Patrick J Fleming; Susan Krueger; Stephen D Fried; Karen G Fleming
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-22       Impact factor: 11.205

4.  Folding and Misfolding of Human Membrane Proteins in Health and Disease: From Single Molecules to Cellular Proteostasis.

Authors:  Justin T Marinko; Hui Huang; Wesley D Penn; John A Capra; Jonathan P Schlebach; Charles R Sanders
Journal:  Chem Rev       Date:  2019-01-04       Impact factor: 60.622

5.  De novo design of transmembrane β barrels.

Authors:  Paul White; Binyong Liang; Anastassia A Vorobieva; Jim E Horne; Asim K Bera; Cameron M Chow; Stacey Gerben; Sinduja Marx; Alex Kang; Alyssa Q Stiving; Sophie R Harvey; Dagan C Marx; G Nasir Khan; Karen G Fleming; Vicki H Wysocki; David J Brockwell; Lukas K Tamm; Sheena E Radford; David Baker
Journal:  Science       Date:  2021-02-19       Impact factor: 47.728

6.  Engineering a Hyperstable Yersinia pestis Outer Membrane Protein Ail Using Thermodynamic Design.

Authors:  Anjana George; Roshika Ravi; Pankaj Bharat Tiwari; Shashank Ranjan Srivastava; Vikas Jain; Radhakrishnan Mahalakshmi
Journal:  J Am Chem Soc       Date:  2022-01-21       Impact factor: 15.419

7.  Structure and Function of Redox-Sensitive Superfolder Green Fluorescent Protein Variant.

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Journal:  Antioxid Redox Signal       Date:  2022-06-22       Impact factor: 7.468

8.  A systematic analysis of the beta hairpin motif in the Protein Data Bank.

Authors:  Cory D DuPai; Bryan W Davies; Claus O Wilke
Journal:  Protein Sci       Date:  2021-01-07       Impact factor: 6.993

Review 9.  Outer membrane protein folding from an energy landscape perspective.

Authors:  Bob Schiffrin; David J Brockwell; Sheena E Radford
Journal:  BMC Biol       Date:  2017-12-21       Impact factor: 7.431

10.  Reversible folding energetics of Yersinia Ail barrel reveals a hyperfluorescent intermediate.

Authors:  Ankit Gupta; Radhakrishnan Mahalakshmi
Journal:  Biochim Biophys Acta Biomembr       Date:  2019-10-28       Impact factor: 3.747

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