Literature DB >> 20133664

The transition state for folding of an outer membrane protein.

Gerard H M Huysmans1, Stephen A Baldwin, David J Brockwell, Sheena E Radford.   

Abstract

Inspired by the seminal work of Anfinsen, investigations of the folding of small water-soluble proteins have culminated in detailed insights into how these molecules attain and stabilize their native folds. In contrast, despite their overwhelming importance in biology, progress in understanding the folding and stability of membrane proteins remains relatively limited. Here we use mutational analysis to describe the transition state involved in the reversible folding of the beta-barrel membrane protein PhoPQ-activated gene P (PagP) from a highly disordered state in 10 M urea to a native protein embedded in a lipid bilayer. Analysis of the equilibrium stability and unfolding kinetics of 19 variants that span all eight beta-strands of this 163-residue protein revealed that the transition-state structure is a highly polarized, partly formed beta-barrel. The results provide unique and detailed insights into the transition-state structure for beta-barrel membrane protein folding into a lipid bilayer and are consistent with a model for outer membrane protein folding via a tilted insertion mechanism.

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Year:  2010        PMID: 20133664      PMCID: PMC2814873          DOI: 10.1073/pnas.0911904107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  41 in total

1.  Probing the folding and unfolding of wild-type and mutant forms of bacteriorhodopsin in micellar solutions: evaluation of reversible unfolding conditions.

Authors:  G Q Chen; E Gouaux
Journal:  Biochemistry       Date:  1999-11-16       Impact factor: 3.162

2.  Kinetics, thermodynamics and evolution of non-native interactions in a protein folding nucleus.

Authors:  L Li; L A Mirny; E I Shakhnovich
Journal:  Nat Struct Biol       Date:  2000-04

Review 3.  Disease-related misassembly of membrane proteins.

Authors:  Charles R Sanders; Jeffrey K Myers
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

4.  A hydrocarbon ruler measures palmitate in the enzymatic acylation of endotoxin.

Authors:  Victoria E Ahn; Eileen I Lo; Christian K Engel; Lu Chen; Peter M Hwang; Lewis E Kay; Russell E Bishop; Gilbert G Privé
Journal:  EMBO J       Date:  2004-07-22       Impact factor: 11.598

5.  Testing protein-folding simulations by experiment: B domain of protein A.

Authors:  Satoshi Sato; Tomasz L Religa; Valerie Daggett; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-06       Impact factor: 11.205

6.  Elastic coupling of integral membrane protein stability to lipid bilayer forces.

Authors:  Heedeok Hong; Lukas K Tamm
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-27       Impact factor: 11.205

7.  A method for assessing the stability of a membrane protein.

Authors:  F W Lau; J U Bowie
Journal:  Biochemistry       Date:  1997-05-13       Impact factor: 3.162

8.  Transfer of palmitate from phospholipids to lipid A in outer membranes of gram-negative bacteria.

Authors:  R E Bishop; H S Gibbons; T Guina; M S Trent; S I Miller; C R Raetz
Journal:  EMBO J       Date:  2000-10-02       Impact factor: 11.598

9.  Solution structure and dynamics of the outer membrane enzyme PagP by NMR.

Authors:  Peter M Hwang; Wing-Yiu Choy; Eileen I Lo; Lu Chen; Julie D Forman-Kay; Christian R H Raetz; Gilbert G Privé; Russell E Bishop; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-30       Impact factor: 11.205

Review 10.  The ABCs of solute carriers: physiological, pathological and therapeutic implications of human membrane transport proteinsIntroduction.

Authors:  Matthias A Hediger; Michael F Romero; Ji-Bin Peng; Andreas Rolfs; Hitomi Takanaga; Elspeth A Bruford
Journal:  Pflugers Arch       Date:  2003-11-18       Impact factor: 3.657

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  58 in total

1.  A knowledge-based potential highlights unique features of membrane α-helical and β-barrel protein insertion and folding.

Authors:  Daniel Hsieh; Alexander Davis; Vikas Nanda
Journal:  Protein Sci       Date:  2011-11-23       Impact factor: 6.725

2.  Sequential steps in the assembly of the multimeric outer membrane secretin PulD.

Authors:  Gerard H M Huysmans; Ingrid Guilvout; Anthony P Pugsley
Journal:  J Biol Chem       Date:  2013-09-09       Impact factor: 5.157

3.  Outer membrane phospholipase A in phospholipid bilayers: a model system for concerted computational and experimental investigations of amino acid side chain partitioning into lipid bilayers.

Authors:  Patrick J Fleming; J Alfredo Freites; C Preston Moon; Douglas J Tobias; Karen G Fleming
Journal:  Biochim Biophys Acta       Date:  2011-07-22

4.  Overcoming hysteresis to attain reversible equilibrium folding for outer membrane phospholipase A in phospholipid bilayers.

Authors:  C Preston Moon; Sarah Kwon; Karen G Fleming
Journal:  J Mol Biol       Date:  2011-08-24       Impact factor: 5.469

5.  Side-chain hydrophobicity scale derived from transmembrane protein folding into lipid bilayers.

Authors:  C Preston Moon; Karen G Fleming
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

6.  Cooperative folding of a polytopic α-helical membrane protein involves a compact N-terminal nucleus and nonnative loops.

Authors:  Wojciech Paslawski; Ove K Lillelund; Julie Veje Kristensen; Nicholas P Schafer; Rosanna P Baker; Sinisa Urban; Daniel E Otzen
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-08       Impact factor: 11.205

7.  Computational redesign of the lipid-facing surface of the outer membrane protein OmpA.

Authors:  James A Stapleton; Timothy A Whitehead; Vikas Nanda
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-21       Impact factor: 11.205

8.  Extreme Dynamics in the BamA β-Barrel Seam.

Authors:  Pamela Arden Doerner; Marcelo C Sousa
Journal:  Biochemistry       Date:  2017-06-12       Impact factor: 3.162

9.  Early folding events protect aggregation-prone regions of a β-rich protein.

Authors:  Ivan L Budyak; Beena Krishnan; Anna M Marcelino-Cruz; Mylene C Ferrolino; Anastasia Zhuravleva; Lila M Gierasch
Journal:  Structure       Date:  2013-03-05       Impact factor: 5.006

10.  Folding and Misfolding of Human Membrane Proteins in Health and Disease: From Single Molecules to Cellular Proteostasis.

Authors:  Justin T Marinko; Hui Huang; Wesley D Penn; John A Capra; Jonathan P Schlebach; Charles R Sanders
Journal:  Chem Rev       Date:  2019-01-04       Impact factor: 60.622

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