Literature DB >> 28934594

Noncoding RNAs in Polycomb and Trithorax Regulation: A Quantitative Perspective.

Leonie Ringrose1.   

Abstract

The question of how noncoding RNAs are involved in Polycomb group (PcG) and Trithorax group (TrxG) regulation has been on an extraordinary journey over the last three decades. Favored models have risen and fallen, and healthy debates have swept back and forth. The field has recently reached a critical mass of compelling data that throws light on several previously unresolved issues. The time is ripe for a fruitful combination of these findings with two other long-running avenues of research, namely the biochemical properties of the PcG/TrxG system and the application of theoretical mathematical models toward an understanding of the system's regulatory properties. I propose that integrating our current knowledge of noncoding RNA into a quantitative biochemical and theoretical framework for PcG and TrxG regulation has the potential to reconcile several apparently conflicting models and identifies fascinating questions for future research.

Keywords:  Polycomb; Trithorax; bistability; chromatin; mathematical model; noncoding RNA

Mesh:

Substances:

Year:  2017        PMID: 28934594     DOI: 10.1146/annurev-genet-120116-023402

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  17 in total

1.  Bivalency in Drosophila embryos is associated with strong inducibility of Polycomb target genes.

Authors:  Arslan Akmammedov; Marco Geigges; Renato Paro
Journal:  Fly (Austin)       Date:  2019-05-25       Impact factor: 2.160

Review 2.  Towards understanding of PRC2 binding to RNA.

Authors:  Junli Yan; Bibek Dutta; Yan Ting Hee; Wee-Joo Chng
Journal:  RNA Biol       Date:  2019-01-08       Impact factor: 4.652

3.  RNA exploits an exposed regulatory site to inhibit the enzymatic activity of PRC2.

Authors:  Qi Zhang; Nicholas J McKenzie; Robert Warneford-Thomson; Emma H Gail; Sarena F Flanigan; Brady M Owen; Richard Lauman; Vitalina Levina; Benjamin A Garcia; Ralf B Schittenhelm; Roberto Bonasio; Chen Davidovich
Journal:  Nat Struct Mol Biol       Date:  2019-03-04       Impact factor: 15.369

Review 4.  lncRedibly versatile: biochemical and biological functions of long noncoding RNAs.

Authors:  Emily J Shields; Ana F Petracovici; Roberto Bonasio
Journal:  Biochem J       Date:  2019-04-10       Impact factor: 3.857

5.  Over-expression of Hsp83 in grossly depleted hsrω lncRNA background causes synthetic lethality and l(2)gl phenocopy in Drosophila.

Authors:  Mukulika Ray; Sundaram Acharya; Sakshi Shambhavi; Subhash C Lakhotia
Journal:  J Biosci       Date:  2019-06       Impact factor: 1.826

6.  RNA-DNA strand exchange by the Drosophila Polycomb complex PRC2.

Authors:  Célia Alecki; Victoria Chiwara; Lionel A Sanz; Daniel Grau; Osvaldo Arias Pérez; Elodie L Boulier; Karim-Jean Armache; Frédéric Chédin; Nicole J Francis
Journal:  Nat Commun       Date:  2020-04-14       Impact factor: 14.919

Review 7.  A Structural Perspective on Gene Repression by Polycomb Repressive Complex 2.

Authors:  Xin Liu
Journal:  Subcell Biochem       Date:  2021

8.  LSM2-8 and XRN-2 contribute to the silencing of H3K27me3-marked genes through targeted RNA decay.

Authors:  Anna Mattout; Dimos Gaidatzis; Jan Padeken; Christoph D Schmid; Florian Aeschimann; Véronique Kalck; Susan M Gasser
Journal:  Nat Cell Biol       Date:  2020-04-06       Impact factor: 28.824

9.  Theoretical analysis of Polycomb-Trithorax systems predicts that poised chromatin is bistable and not bivalent.

Authors:  Kim Sneppen; Leonie Ringrose
Journal:  Nat Commun       Date:  2019-05-13       Impact factor: 14.919

Review 10.  Control of Intra-Thymic αβ T Cell Selection and Maturation by H3K27 Methylation and Demethylation.

Authors:  Rémy Bosselut
Journal:  Front Immunol       Date:  2019-04-03       Impact factor: 7.561

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