| Literature DB >> 28934284 |
Wenzheng Yuan1, Jinhuang Chen2, Yan Shu3, Sanguang Liu4, Liang Wu1, Jintong Ji1, Zhengyi Liu1, Qiang Tang1, Zili Zhou1, Yifeng Cheng1, Bin Jiang5, Xiaogang Shu1.
Abstract
OBJECTIVE: One of the critical mechanisms of gastrointestinal cancer pathogenesis is the silencing of death associated protein kinase 1 (DAPK1), which could be caused by aberrant methylation of the promoter. However, the relationship between DAPK1 methylation and the risk of gastrointestinal cancer is still controversial. Hence, we conducted this study to determine the potential correlation.Entities:
Mesh:
Substances:
Year: 2017 PMID: 28934284 PMCID: PMC5608298 DOI: 10.1371/journal.pone.0184959
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Flow chart of study selection for this meta analysis.
Characteristics of the included studies.
| No. | Author | Year | Country | Cancer Type | Case(cancer/ control) | Source of Control | Methylation in tumor | Methylation in Control |
|---|---|---|---|---|---|---|---|---|
| 1 | Bagci[ | 2016 | Turkey(Asia) | CRC | 93/14 | AT | 42/93 | 4/14 |
| 2 | Laskar[ | 2015 | India(Asia) | CRC | 80/20 | AT | 27/80 | 6/20 |
| 3 | Almeida[ | 2015 | Brazil(South America) | CRC | 5 | AT | 4/5 | 5/5 |
| 4 | Kupčinskaitė-Noreikienė[ | 2013 | Lithuanian (Europe) | GC | 69 | AT | 33/69 | 32/69 |
| 5 | Nomura[ | 2013 | Japan(Asia) | GC | 115/412 | NT | 95/115 | 201/412 |
| 6 | Ye[ | 2012 | China(Asia) | GC | 62 | AT | 34/62 | 11/62 |
| 7 | Li [ | 2011 | China(Asia) | EC | 47 | AT | 22/47 | 6/47 |
| 8 | Hu[ | 2010 | China(Asia) | GC | 70/30 | NT | 42/70 | 0/30 |
| AT | 42/70 | 10/70 | ||||||
| 9 | Lee[ | 2009 | Korea(Asia) | CRC | 243/148 | NT | 81/243 | 0/148 |
| 10 | Zou[ | 2009 | China(Asia) | GC | 16/20 | NT | 7/16 | 0/20 |
| 11 | Ksiaa[ | 2009 | Tunisia (Africa) | GC | 68/53 | AT | 21/68 | 13/53 |
| 12 | Kato[ | 2008 | Japan(Asia) | GC | 81/43 | AT | 18/81 | 4/43 |
| 13 | Kuester[ | 2007 | Germany (Europe) | EC | 35/20 | NT | 21/35 | 4/20 |
| 14 | Mittag [ | 2006 | Germany (Europe) | CRC | 22/8 | AT | 18/22 | 2/8 |
| 15 | Anacleto[ | 2005 | Brazil(South America) | CRC | 106/30 | AT | 21/106 | 0/30 |
| 16 | Chan[ | 2005 | China(Asia) | GC | 107/23 | NT | 74/107 | 0/23 |
| 17 | Schildhaus[ | 2005 | Germany (Europe) | GC | 7 | AT | 6/7 | 2/7 |
| EC | 10 | AT | 7/10 | 4/10 | ||||
| 18 | Lee [ | 2004 | Korea(Asia) | CRC | 149/24 | NT | 71/149 | 0/24 |
| 19 | Sabbioni[ | 2003 | Italy(Europe) | GC | 21/6 | NT | 19/21 | 2/6 |
| CRC | 47/4 | NT | 35/47 | 0/4 | ||||
| 20 | Waki[ | 2003 | Japan(Asia) | GC | 93 | AT | 40/93 | 68/93 |
| 21 | Yamaguchi[ | 2003 | Japan(Asia) | CRC | 122/10 | NT | 67/122 | 0/10 |
| 22 | To[ | 2002 | China(Asia) | GC | 31/10 | NT | 22/31 | 0/10 |
NT: normal tissue
AT: normal tissue adjacent to the tumor
Fig 2DAPK1 methylation and the risk of gastrointestinal cancer.
Fig 3DAPK1 methylation and the risk of different type of gastrointestinal cancer: A. esophageal cancer (EC); B. gastric cancer (GC); and C. colorectal cancer (CRC).
Fig 4Sensitivity analysis.
Subgroup analysis of studies reporting on the association of DAPK1 methylation and gastrointestinal cancer.
| Source of the control group | Geographic area | Sample size of case group | |||||
|---|---|---|---|---|---|---|---|
| Normal tissue subgroup | Normal tissue adjacent to the tumor | Asian subgroup | Non-Asian subgroup | >60 | ≤60 | ||
| Study(n) | 10 | 12 | 13 | 8 | 14 | 7 | |
| OR | 12.94 | 2.92 | 7.74 | 2.40 | 5.50 | 7.37 | |
| Model | Fixed | Fixed | Fixed | Fixed | Random | Fixed | |
| I2 | 61% | 67% | 67% | 68% | 79% | 12% | |
| P | <0.00001 | <0.00001 | <0.00001 | <0.0001 | <0.00001 | <0.00001 | |
| Study(n) | 1 | 2 | 1 | 2 | - | 3 | |
| OR | 6.00 | 5.33 | 6.01 | 5.07 | - | 5.54 | |
| Model | Fixed | Fixed | - | Fixed | - | Fixed | |
| I2 | - | 0% | - | 0% | - | 0% | |
| P | 0.006 | 0.0003 | 0.0006 | 0.002 | - | <0.00001 | |
| Study(n) | 6 | 6 | 7 | 4 | 7 | 4 | |
| OR | 9.04 | 3.21 | 7.26 | 1.60 | 4.12 | 27.54 | |
| Model | Fixed | Random | Fixed | Fixed | Random | Fixed | |
| I2 | 59% | 78% | 55% | 68% | 84% | 0% | |
| P | <0.00001 | 0.006 | <0.00001 | 0.05 | 0.0006 | <0.00001 | |
| Study(n) | 4 | 5 | 5 | 4 | 6 | 3 | |
| OR | 64.96 | 2.64 | 10.18 | 8.36 | 10.53 | 6.34 | |
| Model | Fixed | Fixed | Random | Fixed | Random | Fixed | |
| I2 | 0% | 51% | 85% | 37% | 81% | 57% | |
| P | <0.00001 | 0.09 | 0.03 | 0.0005 | 0.01 | 0.004 | |
Fig 5DAPK1 methylation and T stage (T3+T4 vs.T1+T2) in: A. EC; B. GC; and C. CRC.
Fig 8DAPK1 methylation and cancer differentiation (G3 vs. G1+G2) in: A. EC; B. GC; and C. CRC.
Fig 6DAPK1 methylation and N stage (positive vs. negative) in: A. EC; B. GC; and C. CRC.
Fig 7DAPK1 methylation and M stage (M1 vs. M0): A. GC; and B. CRC.
Associations between DAPK1 methylation and the clinicopathological features of gastrointestinal cancer.
| Age | Gender | Lauren Classification | Asian T stage | Asian N stage | Asia M stage | Asia Differentiation | ||
|---|---|---|---|---|---|---|---|---|
| 9 | 3 | - | 4 | 8 | 5 | 6 | ||
| 0.83 | 0.48 | - | 1.06 | 1.29 | 1.37 | 1.41 | ||
| Fixed | Fixed | - | Fixed | Fixed | Fixed | Fixed | ||
| 0% | 0% | - | 75% | 61% | 0% | 48% | ||
| 0.40 | 0.19 | - | 0.83 | 0.15 | 0.25 | 0.09 | ||
| 3 | 9 | - | 1 | 1 | - | - | ||
| 0.69 | 1.16 | - | 0.36 | 1.43 | - | - | ||
| Fixed | Fixed | - | Fixed | Fixed | - | - | ||
| 0% | 0% | - | - | - | - | - | ||
| 0.41 | 0.42 | - | 0.12 | 0.56 | - | - | ||
| 5 | 3 | 5 | 2 | 6 | 3 | 4 | ||
| 0.88 | 1.01 | 1.12 | 2.68 | 1.66 | 1.41 | 1.69 | ||
| Fixed | Fixed | Fixed | Fixed | Fixed | Fixed | Fixed | ||
| 15% | 0% | 24% | 0% | 57% | 11% | 60% | ||
| 0.62 | 0.98 | 0.63 | 0.01 | 0.02 | 0.40 | 0.03 | ||
| 1 | 3 | - | 1 | 1 | 2 | 2 | ||
| 0.87 | 1.01 | - | 0.46 | 0.57 | 1.33 | 0.90 | ||
| Fixed | Fixed | - | Fixed | Fixed | Fixed | Fixed | ||
| - | 0% | - | - | 0% | 0% | |||
| 0.91 | 0.98 | 0.10 | 0.13 | 0.44 | 0.79 |
Fig 9Funnel plot of the result of pooled analysis.
Analysis of publication bias among included studies.
| Study(n) | P value of Egger’s test | P value of Begg’s test | ||
|---|---|---|---|---|
| Overall | 22 | 0.024 | 0.032 | |
| EC | 3 | 0.259 | 1.000 | |
| GC | 12 | 0.141 | 0.244 | |
| CRC | 9 | 0.040 | 0.005 | |
| Overall | 9 | 0.992 | 0.251 | |
| EC | 3 | 0.007 | 1.000 | |
| GC | 5 | 0.968 | 1.000 | |
| Overall | 13 | 0.806 | 0.373 | |
| EC | 3 | 0.233 | 1.000 | |
| GC | 9 | 0.191 | 1.000 | |
| Overall | 6 | 0.730 | 0.707 | |
| GC | 4 | 0.863 | 0.734 | |
| CRC | 2 | - | 1.000 | |
| Overall | 9 | 0.723 | 1.000 | |
| EC | 2 | - | 1.000 | |
| GC | 6 | 0.823 | 1.000 | |
| CRC | 2 | - | 1.000 | |
| Overall | 8 | 0.491 | 0.446 | |
| Overall | 14 | 0.993 | 0.661 | |
| GC | 5 | 0.618 | 0.462 |