| Literature DB >> 28932472 |
Tuncer Hökelek1, Gülçin Şefiye Aşkın1, Safiye Özkaya2, Hacali Necefoğlu3.
Abstract
The asymmetric unit of the title complex, [Zn(C10H11O2)2(C6H6N2O)2(H2O)], contains one half of the complex mol-ecule, and the ZnII cation and the water O atom lie on a twofold rotation axis. The ZnII cation is coordinated by two carboxyl-ate O atoms of the two symmetry-related 2,4,6-tri-methyl-benzoate (TMB) anions and by the water O atom at distances of 2.0311 (16) and 2.076 (2) Å to form a slightly distorted trigonal-planar arrangement, while the distorted trigonal-bipyramidal coordination sphere is completed by the two pyridine N atoms of the two symmetry-related monodentate nicotinamide (NA) ligands at distances of 2.2066 (19) Å in the axial positions. In the crystal, mol-ecules are linked via inter-molecular N-H⋯O and O-H⋯O hydrogen bonds with R22(12), R33(10) and R33(16) ring motifs, forming a double-column structure running along the c-axis direction. The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H⋯H (58.4%), H⋯C/C⋯H (20.3%) and H⋯O/O⋯H (18.3%) inter-actions.Entities:
Keywords: crystal structure; transition metal complex of benzoic acid and nicotinamide derivatives; zinc
Year: 2017 PMID: 28932472 PMCID: PMC5588578 DOI: 10.1107/S2056989017011690
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title complex, with the atom-numbering scheme. Unlabelled atoms are related to labelled ones by the symmetry operation (1 − x, y, − z). Displacement ellipsoids are drawn at the 40% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H21⋯O1i | 0.91 (3) | 1.88 (3) | 2.766 (3) | 165 (3) |
| N2—H22⋯O3ii | 0.87 (3) | 2.34 (3) | 3.013 (2) | 134 (2) |
| O4—H41⋯O3iii | 0.81 (3) | 1.93 (3) | 2.719 (2) | 165 (3) |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2Part of the crystal structure. O—HcoordW⋯ONA, N—HNA⋯Oc and N—HNA⋯ONA (coordW = coordinating water, c = carboxylate and NA = nicotinamide) hydrogen bonds, enclosing (12), (10) and (16) ring motifs, are shown as dashed lines. Non-bonding H atoms have been omitted for clarity.
Figure 3View of the three-dimensional Hirshfeld surface of the title complex plotted over d norm in the range −0.6568 to 1.4993 a.u.
Figure 4View of the three-dimensional Hirshfeld surface of the title complex plotted over electrostatic potential energy in the range −0.1036 to 0.2354 a.u. using the STO-3G basis set at the Hartree–Fock level of theory. N—H⋯O and O—H⋯O hydrogen-bond donors and acceptors are viewed as blue and red regions around the atoms corresponding to positive and negative potentials, respectively.
Figure 5The full two-dimensional fingerprint plots for the title complex, showing (a) all interactions, and delineated into (b) H⋯H, (c) H⋯C/C⋯H, (d) H⋯O/O⋯H, (e) H⋯N/N⋯H, (f) C⋯C, (g) O⋯C/C⋯O, (h) O⋯N/N⋯O and (i) O⋯O interactions. The d i and d e values are the closest internal and external distances (in Å) from given points on the Hirshfeld surface contacts.
Experimental details
| Crystal data | |
| Chemical formula | [Zn(C10H11O2)2(C6H6N2O)2(H2O)] |
|
| 654.02 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 296 |
|
| 23.4004 (5), 15.1685 (4), 9.2353 (3) |
|
| 3278.06 (15) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.80 |
| Crystal size (mm) | 0.42 × 0.36 × 0.21 |
| Data collection | |
| Diffractometer | Bruker SMART BREEZE CCD |
| Absorption correction | Multi-scan ( |
|
| 0.730, 0.850 |
| No. of measured, independent and observed [ | 44050, 4104, 3310 |
|
| 0.036 |
| (sin θ/λ)max (Å−1) | 0.669 |
| Refinement | |
|
| 0.045, 0.127, 1.08 |
| No. of reflections | 4104 |
| No. of parameters | 213 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.29, −0.32 |
Computer programs: APEX2 and SAINT (Bruker, 2012 ▸), SHELXS97 and SHELXL97 (Sheldrick, 2008 ▸), ORTEP-3 for Windows and WinGX (Farrugia, 2012 ▸) and PLATON (Spek, 2015 ▸).
| [Zn(C10H11O2)2(C6H6N2O)2(H2O)] | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2n 2ab | Cell parameters from 9891 reflections |
| θ = 2.7–28.4° | |
| µ = 0.80 mm−1 | |
| Block, colourless | |
| 0.42 × 0.36 × 0.21 mm |
| Bruker SMART BREEZE CCD diffractometer | 4104 independent reflections |
| Radiation source: fine-focus sealed tube | 3310 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 28.4°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 44050 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4104 reflections | (Δ/σ)max = 0.001 |
| 213 parameters | Δρmax = 0.29 e Å−3 |
| 0 restraints | Δρmin = −0.32 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Zn1 | 0.5000 | 0.74469 (2) | 0.2500 | 0.04143 (13) | |
| O1 | 0.41787 (9) | 0.77620 (12) | 0.4394 (2) | 0.0656 (5) | |
| O2 | 0.44479 (7) | 0.65455 (11) | 0.33298 (16) | 0.0544 (4) | |
| O3 | 0.57370 (8) | 0.99041 (10) | 0.66283 (17) | 0.0589 (4) | |
| O4 | 0.5000 | 0.88159 (15) | 0.2500 | 0.0502 (5) | |
| H41 | 0.5262 (12) | 0.9122 (18) | 0.222 (3) | 0.057 (8)* | |
| N1 | 0.55509 (9) | 0.75557 (11) | 0.4431 (2) | 0.0449 (4) | |
| N2 | 0.58656 (10) | 0.91889 (14) | 0.8743 (2) | 0.0522 (5) | |
| H21 | 0.5893 (13) | 0.867 (2) | 0.924 (3) | 0.078* | |
| H22 | 0.5842 (13) | 0.969 (2) | 0.920 (3) | 0.078* | |
| C1 | 0.41195 (9) | 0.69614 (15) | 0.4166 (2) | 0.0436 (5) | |
| C2 | 0.36403 (9) | 0.64607 (14) | 0.4853 (2) | 0.0433 (5) | |
| C3 | 0.30732 (11) | 0.6708 (2) | 0.4566 (3) | 0.0657 (7) | |
| C4 | 0.26398 (12) | 0.6235 (3) | 0.5224 (4) | 0.0879 (10) | |
| H4 | 0.2263 | 0.6396 | 0.5041 | 0.106* | |
| C5 | 0.27421 (13) | 0.5537 (3) | 0.6139 (4) | 0.0834 (10) | |
| C6 | 0.33025 (13) | 0.53126 (19) | 0.6414 (3) | 0.0664 (7) | |
| H6 | 0.3379 | 0.4846 | 0.7038 | 0.080* | |
| C7 | 0.37565 (10) | 0.57607 (14) | 0.5789 (2) | 0.0481 (5) | |
| C8 | 0.43568 (12) | 0.5514 (2) | 0.6170 (3) | 0.0692 (7) | |
| H8A | 0.4354 | 0.5117 | 0.6980 | 0.104* | |
| H8B | 0.4568 | 0.6035 | 0.6420 | 0.104* | |
| H8C | 0.4534 | 0.5231 | 0.5356 | 0.104* | |
| C9 | 0.29388 (16) | 0.7462 (3) | 0.3543 (5) | 0.1093 (15) | |
| H9A | 0.2533 | 0.7555 | 0.3514 | 0.164* | |
| H9B | 0.3074 | 0.7319 | 0.2589 | 0.164* | |
| H9C | 0.3124 | 0.7988 | 0.3877 | 0.164* | |
| C10 | 0.22443 (18) | 0.5042 (4) | 0.6832 (6) | 0.144 (2) | |
| H10A | 0.1901 | 0.5384 | 0.6732 | 0.217* | |
| H10B | 0.2323 | 0.4949 | 0.7840 | 0.217* | |
| H10C | 0.2196 | 0.4484 | 0.6358 | 0.217* | |
| C11 | 0.55380 (9) | 0.82679 (13) | 0.5282 (2) | 0.0431 (5) | |
| H11 | 0.5294 | 0.8726 | 0.5026 | 0.052* | |
| C12 | 0.58642 (9) | 0.83658 (13) | 0.6518 (2) | 0.0396 (4) | |
| C13 | 0.62260 (11) | 0.76826 (16) | 0.6900 (3) | 0.0521 (5) | |
| H13 | 0.6449 | 0.7718 | 0.7732 | 0.063* | |
| C14 | 0.62482 (12) | 0.69502 (16) | 0.6023 (3) | 0.0605 (7) | |
| H14 | 0.6492 | 0.6485 | 0.6248 | 0.073* | |
| C15 | 0.59098 (11) | 0.69098 (15) | 0.4816 (2) | 0.0524 (6) | |
| H15 | 0.5930 | 0.6410 | 0.4235 | 0.063* | |
| C16 | 0.58181 (9) | 0.92186 (14) | 0.7316 (2) | 0.0427 (5) |
| Zn1 | 0.0472 (2) | 0.02853 (19) | 0.0485 (2) | 0.000 | 0.00026 (14) | 0.000 |
| O1 | 0.0772 (12) | 0.0463 (10) | 0.0733 (12) | −0.0103 (9) | 0.0122 (10) | −0.0028 (9) |
| O2 | 0.0569 (9) | 0.0608 (10) | 0.0456 (8) | −0.0090 (8) | 0.0146 (7) | −0.0075 (7) |
| O3 | 0.0898 (12) | 0.0369 (8) | 0.0499 (9) | 0.0059 (8) | 0.0028 (8) | 0.0006 (7) |
| O4 | 0.0559 (14) | 0.0318 (11) | 0.0630 (14) | 0.000 | 0.0037 (11) | 0.000 |
| N1 | 0.0525 (11) | 0.0331 (9) | 0.0490 (10) | 0.0057 (7) | −0.0026 (8) | −0.0027 (7) |
| N2 | 0.0718 (13) | 0.0428 (11) | 0.0422 (10) | −0.0075 (9) | 0.0027 (9) | −0.0030 (8) |
| C1 | 0.0462 (11) | 0.0490 (12) | 0.0355 (9) | −0.0037 (9) | 0.0004 (8) | 0.0012 (8) |
| C2 | 0.0450 (11) | 0.0459 (11) | 0.0389 (10) | −0.0030 (9) | 0.0039 (8) | −0.0067 (8) |
| C3 | 0.0488 (13) | 0.087 (2) | 0.0613 (15) | 0.0026 (13) | −0.0020 (11) | 0.0045 (14) |
| C4 | 0.0415 (14) | 0.135 (3) | 0.088 (2) | −0.0110 (17) | 0.0016 (13) | 0.002 (2) |
| C5 | 0.0654 (18) | 0.105 (3) | 0.080 (2) | −0.0333 (17) | 0.0173 (15) | −0.0014 (19) |
| C6 | 0.0767 (18) | 0.0598 (16) | 0.0626 (15) | −0.0218 (13) | 0.0108 (13) | 0.0010 (12) |
| C7 | 0.0555 (13) | 0.0386 (11) | 0.0501 (11) | −0.0058 (9) | 0.0068 (10) | −0.0057 (9) |
| C8 | 0.0644 (16) | 0.0619 (16) | 0.0814 (18) | 0.0082 (13) | 0.0039 (14) | 0.0188 (14) |
| C9 | 0.070 (2) | 0.142 (4) | 0.116 (3) | 0.021 (2) | −0.014 (2) | 0.046 (3) |
| C10 | 0.091 (3) | 0.186 (5) | 0.157 (4) | −0.069 (3) | 0.034 (3) | 0.024 (4) |
| C11 | 0.0447 (11) | 0.0342 (10) | 0.0506 (11) | 0.0086 (8) | −0.0034 (9) | −0.0035 (8) |
| C12 | 0.0422 (10) | 0.0376 (10) | 0.0391 (9) | 0.0020 (8) | 0.0046 (8) | 0.0031 (8) |
| C13 | 0.0596 (14) | 0.0548 (13) | 0.0420 (11) | 0.0116 (11) | −0.0022 (10) | 0.0076 (10) |
| C14 | 0.0782 (17) | 0.0474 (13) | 0.0559 (13) | 0.0274 (12) | −0.0024 (12) | 0.0056 (10) |
| C15 | 0.0722 (15) | 0.0354 (11) | 0.0497 (12) | 0.0134 (10) | 0.0015 (11) | −0.0015 (9) |
| C16 | 0.0467 (11) | 0.0384 (11) | 0.0431 (10) | −0.0022 (8) | 0.0034 (8) | −0.0006 (8) |
| Zn1—O2i | 2.0311 (16) | C6—C5 | 1.379 (5) |
| Zn1—O2 | 2.0311 (16) | C6—H6 | 0.9300 |
| Zn1—O4 | 2.076 (2) | C7—C6 | 1.387 (3) |
| Zn1—N1 | 2.2066 (19) | C7—C8 | 1.496 (4) |
| Zn1—N1i | 2.2066 (19) | C8—H8A | 0.9600 |
| O1—C1 | 1.240 (3) | C8—H8B | 0.9600 |
| O2—C1 | 1.259 (3) | C8—H8C | 0.9600 |
| O3—C16 | 1.233 (3) | C9—H9A | 0.9600 |
| O4—H41 | 0.81 (3) | C9—H9B | 0.9600 |
| N1—C11 | 1.336 (3) | C9—H9C | 0.9600 |
| N1—C15 | 1.338 (3) | C10—H10A | 0.9600 |
| N2—C16 | 1.324 (3) | C10—H10B | 0.9600 |
| N2—H21 | 0.91 (3) | C10—H10C | 0.9600 |
| N2—H22 | 0.87 (3) | C11—H11 | 0.9300 |
| C2—C1 | 1.496 (3) | C12—C11 | 1.382 (3) |
| C2—C3 | 1.404 (3) | C12—C13 | 1.384 (3) |
| C2—C7 | 1.396 (3) | C12—C16 | 1.493 (3) |
| C3—C4 | 1.383 (4) | C13—C14 | 1.376 (3) |
| C3—C9 | 1.516 (4) | C13—H13 | 0.9300 |
| C4—H4 | 0.9300 | C14—H14 | 0.9300 |
| C5—C4 | 1.375 (5) | C15—C14 | 1.369 (3) |
| C5—C10 | 1.526 (4) | C15—H15 | 0.9300 |
| O2i—Zn1—O2 | 95.38 (9) | C6—C7—C8 | 119.9 (2) |
| O2—Zn1—O4 | 132.31 (5) | C7—C8—H8A | 109.5 |
| O2i—Zn1—O4 | 132.31 (5) | C7—C8—H8B | 109.5 |
| O2—Zn1—N1 | 96.72 (7) | C7—C8—H8C | 109.5 |
| O2i—Zn1—N1 | 89.07 (7) | H8A—C8—H8B | 109.5 |
| O2—Zn1—N1i | 89.07 (7) | H8A—C8—H8C | 109.5 |
| O2i—Zn1—N1i | 96.72 (7) | H8B—C8—H8C | 109.5 |
| O4—Zn1—N1 | 85.71 (4) | C3—C9—H9A | 109.5 |
| O4—Zn1—N1i | 85.71 (4) | C3—C9—H9B | 109.5 |
| N1—Zn1—N1i | 171.42 (8) | C3—C9—H9C | 109.5 |
| C1—O2—Zn1 | 106.41 (14) | H9A—C9—H9B | 109.5 |
| Zn1—O4—H41 | 125 (2) | H9A—C9—H9C | 109.5 |
| C11—N1—Zn1 | 121.50 (14) | H9B—C9—H9C | 109.5 |
| C11—N1—C15 | 116.7 (2) | C5—C10—H10A | 109.5 |
| C15—N1—Zn1 | 121.76 (15) | C5—C10—H10B | 109.5 |
| C16—N2—H21 | 122.6 (19) | C5—C10—H10C | 109.5 |
| C16—N2—H22 | 117 (2) | H10A—C10—H10B | 109.5 |
| H21—N2—H22 | 121 (3) | H10A—C10—H10C | 109.5 |
| O1—C1—O2 | 121.8 (2) | H10B—C10—H10C | 109.5 |
| O1—C1—C2 | 120.6 (2) | N1—C11—C12 | 124.08 (19) |
| O2—C1—C2 | 117.6 (2) | N1—C11—H11 | 118.0 |
| C3—C2—C1 | 119.5 (2) | C12—C11—H11 | 118.0 |
| C7—C2—C1 | 120.20 (19) | C11—C12—C13 | 117.9 (2) |
| C7—C2—C3 | 120.3 (2) | C11—C12—C16 | 117.47 (18) |
| C2—C3—C9 | 121.0 (3) | C13—C12—C16 | 124.6 (2) |
| C4—C3—C2 | 118.1 (3) | C12—C13—H13 | 120.7 |
| C4—C3—C9 | 120.9 (3) | C14—C13—C12 | 118.5 (2) |
| C3—C4—H4 | 118.6 | C14—C13—H13 | 120.7 |
| C5—C4—C3 | 122.8 (3) | C13—C14—H14 | 120.2 |
| C5—C4—H4 | 118.6 | C15—C14—C13 | 119.6 (2) |
| C4—C5—C6 | 118.0 (3) | C15—C14—H14 | 120.2 |
| C4—C5—C10 | 120.2 (4) | N1—C15—C14 | 123.1 (2) |
| C6—C5—C10 | 121.8 (4) | N1—C15—H15 | 118.4 |
| C5—C6—C7 | 122.0 (3) | C14—C15—H15 | 118.4 |
| C5—C6—H6 | 119.0 | O3—C16—N2 | 123.7 (2) |
| C7—C6—H6 | 119.0 | O3—C16—C12 | 119.17 (18) |
| C2—C7—C8 | 121.3 (2) | N2—C16—C12 | 117.14 (19) |
| C6—C7—C2 | 118.8 (2) | ||
| O2i—Zn1—O2—C1 | 166.98 (17) | C7—C2—C3—C9 | −179.5 (3) |
| O4—Zn1—O2—C1 | −13.02 (17) | C1—C2—C7—C6 | 179.7 (2) |
| N1—Zn1—O2—C1 | 77.29 (14) | C1—C2—C7—C8 | 2.2 (3) |
| N1i—Zn1—O2—C1 | −96.36 (14) | C3—C2—C7—C6 | 0.6 (3) |
| O2—Zn1—N1—C11 | −106.95 (18) | C3—C2—C7—C8 | −176.9 (2) |
| O2i—Zn1—N1—C11 | 157.75 (18) | C2—C3—C4—C5 | −0.2 (5) |
| O2—Zn1—N1—C15 | 72.40 (19) | C9—C3—C4—C5 | 178.8 (4) |
| O2i—Zn1—N1—C15 | −22.91 (19) | C6—C5—C4—C3 | 0.7 (6) |
| O4—Zn1—N1—C11 | 25.19 (17) | C10—C5—C4—C3 | 180.0 (4) |
| O4—Zn1—N1—C15 | −155.46 (19) | C7—C6—C5—C4 | −0.7 (5) |
| Zn1—O2—C1—O1 | −2.4 (3) | C7—C6—C5—C10 | −179.9 (3) |
| Zn1—O2—C1—C2 | 175.91 (15) | C2—C7—C6—C5 | 0.1 (4) |
| Zn1—N1—C11—C12 | 178.69 (16) | C8—C7—C6—C5 | 177.5 (3) |
| C15—N1—C11—C12 | −0.7 (3) | C13—C12—C11—N1 | −0.1 (3) |
| Zn1—N1—C15—C14 | −178.6 (2) | C16—C12—C11—N1 | 177.5 (2) |
| C11—N1—C15—C14 | 0.8 (4) | C11—C12—C13—C14 | 0.9 (3) |
| C3—C2—C1—O1 | 60.0 (3) | C16—C12—C13—C14 | −176.5 (2) |
| C3—C2—C1—O2 | −118.4 (2) | C11—C12—C16—O3 | −33.6 (3) |
| C7—C2—C1—O1 | −119.1 (2) | C11—C12—C16—N2 | 146.1 (2) |
| C7—C2—C1—O2 | 62.5 (3) | C13—C12—C16—O3 | 143.8 (2) |
| C1—C2—C3—C4 | −179.6 (3) | C13—C12—C16—N2 | −36.4 (3) |
| C1—C2—C3—C9 | 1.4 (4) | C12—C13—C14—C15 | −0.9 (4) |
| C7—C2—C3—C4 | −0.5 (4) | N1—C15—C14—C13 | 0.0 (4) |
| H··· | ||||
| N2—H21···O1ii | 0.91 (3) | 1.88 (3) | 2.766 (3) | 165 (3) |
| N2—H22···O3iii | 0.87 (3) | 2.34 (3) | 3.013 (2) | 134 (2) |
| O4—H41···O3iv | 0.81 (3) | 1.93 (3) | 2.719 (2) | 165 (3) |