| Literature DB >> 28932441 |
Christopher S Frampton1, David D MacNicol2.
Abstract
The structure of the estrone-related steroid, Equilenin, C18H18O2 (systematic name 3-hy-droxy-13-methyl-11,12,13,14,15,16-hexa-hydro-cyclo-penta-[a]phen-anthren-17-one), has been determined at 100 K. The crystals are ortho-rhom-bic, P212121, and the absolute structure of the mol-ecule in the crystal has been determined by resonant scattering [Flack parameter = -0.05 (4)]. The C atoms of the A and B rings are almost coplanar, with an r.m.s. deviation from planarity of 0.0104 Å. The C ring has a sofa conformation, while the D ring has an envelope conformation with the methine C atom as the flap. The keto O atom and the methyl group are translated 0.78 and 0.79 Å, respectively, from the equivalent positions on 17β-estrone. In the crystal, mol-ecules are linked by O-H⋯O hydrogen bonds, forming chains parallel to the c-axis direction.Entities:
Keywords: Equilenin; Equilin; conformation; crystal structure; estrone; hydrogen bonding; steroid
Year: 2017 PMID: 28932441 PMCID: PMC5598853 DOI: 10.1107/S2056989017010532
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1View of the molecular structure of compound 1, with the atom labelling. Displacement ellipsoids are drawn at the 50% probability level.
Figure 2View of the structure overlay of compounds 1 (red), 2 (blue) and 3 (green). The overlay was performed by a superposition of the atoms in the A ring only.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H3 | 0.95 (3) | 1.82 (3) | 2.7153 (17) | 157 (3) |
Symmetry code: (i) .
Figure 3View along the b axis of the crystal packing of compound 1. The intermolecular O—H⋯O hydrogen bonds are shown as dashed lines (see Table 1 ▸).
Experimental details
| Crystal data | |
| Chemical formula | C18H18O2 |
|
| 266.32 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 100 |
|
| 7.27709 (7), 7.32686 (6), 25.5179 (2) |
|
| 1360.57 (2) |
|
| 4 |
| Radiation type | Cu |
| μ (mm−1) | 0.66 |
| Crystal size (mm) | 0.41 × 0.12 × 0.07 |
| Data collection | |
| Diffractometer | Rigaku Oxford Diffraction SuperNova Dualflex AtlasS2 |
| Absorption correction | Multi-scan ( |
|
| 0.853, 0.960 |
| No. of measured, independent and observed [ | 16660, 2769, 2754 |
|
| 0.022 |
| (sin θ/λ)max (Å−1) | 0.625 |
| Refinement | |
|
| 0.029, 0.080, 1.01 |
| No. of reflections | 2769 |
| No. of parameters | 186 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.26, −0.17 |
| Absolute structure | Flack |
| Absolute structure parameter | −0.05 (4) |
Computer programs: CrysAlis PRO (Rigaku Oxford Diffraction, 2015 ▸), SHELXD2014 (Sheldrick, 2010 ▸), SHELXL2014 (Sheldrick, 2015 ▸), SHELXTL (Sheldrick, 2008 ▸) and Mercury (Macrae et al., 2008 ▸), SHELXTL (Sheldrick, 2008 ▸) and publCIF (Westrip, 2010 ▸).
| C18H18O2 | |
| Melting point: 531 K | |
| Orthorhombic, | Cu |
| Cell parameters from 13177 reflections | |
| θ = 3.5–76.4° | |
| µ = 0.66 mm−1 | |
| Rod, colourless | |
| 0.41 × 0.12 × 0.07 mm |
| Rigaku Oxford Diffraction SuperNova Dualflex AtlasS2 diffractometer | 2769 independent reflections |
| Radiation source: fine-focus sealed X-ray tube, Enhance (Cu) X-ray Source | 2754 reflections with |
| Detector resolution: 5.2921 pixels mm-1 | |
| ω scans | θmax = 74.5°, θmin = 3.5° |
| Absorption correction: multi-scan (CrysAlis PRO; Rigaku Oxford Diffraction, 2015) | |
| 16660 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2769 reflections | Δρmax = 0.26 e Å−3 |
| 186 parameters | Δρmin = −0.17 e Å−3 |
| 0 restraints | Absolute structure: Flack |
| Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.05 (4) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O3 | 0.06030 (17) | 0.42177 (17) | 0.09478 (4) | 0.0234 (3) | |
| H3A | 0.155 (4) | 0.472 (4) | 0.0738 (10) | 0.058 (8)* | |
| O17 | 0.23720 (17) | 0.44067 (19) | 0.51461 (4) | 0.0277 (3) | |
| C1 | −0.0140 (2) | 0.4004 (2) | 0.23492 (6) | 0.0184 (3) | |
| H1A | −0.1120 | 0.3698 | 0.2579 | 0.022* | |
| C2 | −0.0417 (2) | 0.3930 (2) | 0.18189 (6) | 0.0191 (3) | |
| H2A | −0.1585 | 0.3588 | 0.1685 | 0.023* | |
| C3 | 0.1025 (2) | 0.4357 (2) | 0.14700 (6) | 0.0184 (3) | |
| C4 | 0.2710 (2) | 0.4870 (2) | 0.16578 (6) | 0.0185 (3) | |
| H4A | 0.3673 | 0.5152 | 0.1420 | 0.022* | |
| C5 | 0.3030 (2) | 0.4983 (2) | 0.22075 (6) | 0.0164 (3) | |
| C6 | 0.4744 (2) | 0.5542 (2) | 0.24123 (6) | 0.0191 (3) | |
| H6A | 0.5719 | 0.5844 | 0.2181 | 0.023* | |
| C7 | 0.5009 (2) | 0.5651 (2) | 0.29424 (6) | 0.0182 (3) | |
| H7A | 0.6172 | 0.6022 | 0.3073 | 0.022* | |
| C8 | 0.3584 (2) | 0.5223 (2) | 0.32991 (6) | 0.0162 (3) | |
| C9 | 0.1889 (2) | 0.4662 (2) | 0.31167 (6) | 0.0156 (3) | |
| C10 | 0.1585 (2) | 0.4530 (2) | 0.25640 (6) | 0.0156 (3) | |
| C11 | 0.0307 (2) | 0.4177 (2) | 0.34819 (6) | 0.0181 (3) | |
| H11A | −0.0010 | 0.2877 | 0.3427 | 0.022* | |
| H11B | −0.0777 | 0.4910 | 0.3379 | 0.022* | |
| C12 | 0.0654 (2) | 0.4477 (2) | 0.40723 (6) | 0.0188 (3) | |
| H12A | 0.0321 | 0.5743 | 0.4169 | 0.023* | |
| H12B | −0.0125 | 0.3634 | 0.4279 | 0.023* | |
| C13 | 0.2666 (2) | 0.4136 (2) | 0.41985 (5) | 0.0174 (3) | |
| C14 | 0.3840 (2) | 0.5486 (2) | 0.38816 (6) | 0.0175 (3) | |
| H14A | 0.3364 | 0.6733 | 0.3965 | 0.021* | |
| C15 | 0.5749 (2) | 0.5349 (3) | 0.41347 (6) | 0.0233 (3) | |
| H15A | 0.6510 | 0.6432 | 0.4053 | 0.028* | |
| H15B | 0.6404 | 0.4234 | 0.4020 | 0.028* | |
| C16 | 0.5263 (2) | 0.5265 (3) | 0.47245 (6) | 0.0278 (4) | |
| H16A | 0.6101 | 0.4423 | 0.4911 | 0.033* | |
| H16B | 0.5360 | 0.6491 | 0.4886 | 0.033* | |
| C17 | 0.3293 (2) | 0.4572 (2) | 0.47493 (6) | 0.0210 (3) | |
| C18 | 0.3214 (2) | 0.2130 (2) | 0.41011 (6) | 0.0209 (3) | |
| H18A | 0.2300 | 0.1321 | 0.4261 | 0.031* | |
| H18B | 0.4422 | 0.1896 | 0.4257 | 0.031* | |
| H18C | 0.3269 | 0.1899 | 0.3723 | 0.031* |
| O3 | 0.0254 (6) | 0.0327 (6) | 0.0121 (5) | −0.0031 (5) | −0.0025 (4) | 0.0006 (4) |
| O17 | 0.0239 (6) | 0.0460 (7) | 0.0131 (5) | −0.0037 (6) | 0.0025 (4) | −0.0009 (5) |
| C1 | 0.0173 (7) | 0.0209 (7) | 0.0170 (7) | −0.0030 (6) | 0.0015 (6) | 0.0020 (5) |
| C2 | 0.0163 (7) | 0.0216 (7) | 0.0193 (7) | −0.0032 (6) | −0.0028 (6) | 0.0011 (6) |
| C3 | 0.0219 (7) | 0.0202 (7) | 0.0132 (7) | 0.0004 (6) | −0.0015 (6) | 0.0014 (6) |
| C4 | 0.0191 (7) | 0.0218 (7) | 0.0146 (7) | 0.0019 (6) | 0.0025 (6) | 0.0023 (5) |
| C5 | 0.0160 (7) | 0.0183 (7) | 0.0149 (7) | 0.0011 (6) | 0.0011 (5) | 0.0020 (5) |
| C6 | 0.0146 (7) | 0.0254 (8) | 0.0171 (7) | 0.0000 (6) | 0.0037 (6) | 0.0035 (6) |
| C7 | 0.0122 (7) | 0.0243 (8) | 0.0182 (7) | −0.0020 (6) | −0.0012 (6) | 0.0030 (6) |
| C8 | 0.0157 (7) | 0.0192 (7) | 0.0136 (7) | 0.0012 (6) | 0.0005 (5) | 0.0017 (6) |
| C9 | 0.0145 (7) | 0.0183 (7) | 0.0141 (6) | 0.0004 (6) | 0.0020 (5) | 0.0019 (5) |
| C10 | 0.0153 (7) | 0.0163 (7) | 0.0152 (7) | 0.0014 (6) | 0.0012 (5) | 0.0014 (5) |
| C11 | 0.0132 (7) | 0.0269 (8) | 0.0142 (7) | −0.0015 (6) | 0.0011 (5) | 0.0009 (6) |
| C12 | 0.0132 (7) | 0.0291 (8) | 0.0143 (6) | 0.0007 (6) | 0.0021 (5) | 0.0000 (6) |
| C13 | 0.0146 (7) | 0.0256 (7) | 0.0121 (6) | 0.0002 (6) | 0.0006 (5) | 0.0010 (6) |
| C14 | 0.0145 (7) | 0.0241 (7) | 0.0140 (7) | −0.0019 (6) | −0.0004 (5) | 0.0004 (6) |
| C15 | 0.0154 (7) | 0.0393 (9) | 0.0153 (7) | −0.0042 (7) | −0.0021 (5) | 0.0029 (7) |
| C16 | 0.0200 (8) | 0.0483 (10) | 0.0151 (7) | −0.0047 (8) | −0.0027 (6) | 0.0019 (7) |
| C17 | 0.0193 (7) | 0.0287 (8) | 0.0148 (7) | 0.0018 (7) | −0.0010 (5) | 0.0011 (6) |
| C18 | 0.0195 (7) | 0.0261 (8) | 0.0170 (7) | 0.0013 (6) | 0.0010 (6) | 0.0030 (6) |
| O3—C3 | 1.3714 (17) | C11—C12 | 1.5433 (19) |
| O3—H3A | 0.95 (3) | C11—H11A | 0.9900 |
| O17—C17 | 1.220 (2) | C11—H11B | 0.9900 |
| C1—C2 | 1.369 (2) | C12—C13 | 1.520 (2) |
| C1—C10 | 1.423 (2) | C12—H12A | 0.9900 |
| C1—H1A | 0.9500 | C12—H12B | 0.9900 |
| C2—C3 | 1.411 (2) | C13—C17 | 1.5118 (19) |
| C2—H2A | 0.9500 | C13—C14 | 1.537 (2) |
| C3—C4 | 1.369 (2) | C13—C18 | 1.544 (2) |
| C4—C5 | 1.4243 (19) | C14—C15 | 1.535 (2) |
| C4—H4A | 0.9500 | C14—H14A | 1.0000 |
| C5—C6 | 1.413 (2) | C15—C16 | 1.547 (2) |
| C5—C10 | 1.429 (2) | C15—H15A | 0.9900 |
| C6—C7 | 1.369 (2) | C15—H15B | 0.9900 |
| C6—H6A | 0.9500 | C16—C17 | 1.523 (2) |
| C7—C8 | 1.414 (2) | C16—H16A | 0.9900 |
| C7—H7A | 0.9500 | C16—H16B | 0.9900 |
| C8—C9 | 1.381 (2) | C18—H18A | 0.9800 |
| C8—C14 | 1.5103 (19) | C18—H18B | 0.9800 |
| C9—C10 | 1.4309 (19) | C18—H18C | 0.9800 |
| C9—C11 | 1.5234 (19) | ||
| C3—O3—H3A | 111.0 (17) | C13—C12—H12A | 109.7 |
| C2—C1—C10 | 121.43 (14) | C11—C12—H12A | 109.7 |
| C2—C1—H1A | 119.3 | C13—C12—H12B | 109.7 |
| C10—C1—H1A | 119.3 | C11—C12—H12B | 109.7 |
| C1—C2—C3 | 120.34 (14) | H12A—C12—H12B | 108.2 |
| C1—C2—H2A | 119.8 | C17—C13—C12 | 116.95 (12) |
| C3—C2—H2A | 119.8 | C17—C13—C14 | 100.69 (12) |
| C4—C3—O3 | 124.14 (14) | C12—C13—C14 | 108.58 (12) |
| C4—C3—C2 | 120.39 (13) | C17—C13—C18 | 105.82 (13) |
| O3—C3—C2 | 115.46 (14) | C12—C13—C18 | 111.80 (13) |
| C3—C4—C5 | 120.47 (14) | C14—C13—C18 | 112.60 (12) |
| C3—C4—H4A | 119.8 | C8—C14—C15 | 121.14 (13) |
| C5—C4—H4A | 119.8 | C8—C14—C13 | 111.54 (13) |
| C6—C5—C4 | 121.68 (14) | C15—C14—C13 | 103.87 (12) |
| C6—C5—C10 | 118.77 (13) | C8—C14—H14A | 106.5 |
| C4—C5—C10 | 119.55 (14) | C15—C14—H14A | 106.5 |
| C7—C6—C5 | 120.43 (14) | C13—C14—H14A | 106.5 |
| C7—C6—H6A | 119.8 | C14—C15—C16 | 101.83 (12) |
| C5—C6—H6A | 119.8 | C14—C15—H15A | 111.4 |
| C6—C7—C8 | 121.33 (14) | C16—C15—H15A | 111.4 |
| C6—C7—H7A | 119.3 | C14—C15—H15B | 111.4 |
| C8—C7—H7A | 119.3 | C16—C15—H15B | 111.4 |
| C9—C8—C7 | 120.24 (13) | H15A—C15—H15B | 109.3 |
| C9—C8—C14 | 118.66 (13) | C17—C16—C15 | 105.59 (13) |
| C7—C8—C14 | 120.98 (14) | C17—C16—H16A | 110.6 |
| C8—C9—C10 | 119.37 (13) | C15—C16—H16A | 110.6 |
| C8—C9—C11 | 122.58 (13) | C17—C16—H16B | 110.6 |
| C10—C9—C11 | 118.06 (13) | C15—C16—H16B | 110.6 |
| C1—C10—C5 | 117.81 (13) | H16A—C16—H16B | 108.8 |
| C1—C10—C9 | 122.30 (13) | O17—C17—C13 | 125.78 (15) |
| C5—C10—C9 | 119.86 (14) | O17—C17—C16 | 125.78 (15) |
| C9—C11—C12 | 116.13 (13) | C13—C17—C16 | 108.43 (13) |
| C9—C11—H11A | 108.3 | C13—C18—H18A | 109.5 |
| C12—C11—H11A | 108.3 | C13—C18—H18B | 109.5 |
| C9—C11—H11B | 108.3 | H18A—C18—H18B | 109.5 |
| C12—C11—H11B | 108.3 | C13—C18—H18C | 109.5 |
| H11A—C11—H11B | 107.4 | H18A—C18—H18C | 109.5 |
| C13—C12—C11 | 109.95 (12) | H18B—C18—H18C | 109.5 |
| C10—C1—C2—C3 | 0.7 (2) | C10—C9—C11—C12 | −175.62 (14) |
| C1—C2—C3—C4 | −0.7 (2) | C9—C11—C12—C13 | −32.63 (19) |
| C1—C2—C3—O3 | 179.27 (14) | C11—C12—C13—C17 | 173.40 (14) |
| O3—C3—C4—C5 | 179.87 (14) | C11—C12—C13—C14 | 60.42 (17) |
| C2—C3—C4—C5 | −0.2 (2) | C11—C12—C13—C18 | −64.41 (16) |
| C3—C4—C5—C6 | −178.75 (15) | C9—C8—C14—C15 | 155.31 (15) |
| C3—C4—C5—C10 | 1.0 (2) | C7—C8—C14—C15 | −28.7 (2) |
| C4—C5—C6—C7 | 179.52 (14) | C9—C8—C14—C13 | 32.65 (19) |
| C10—C5—C6—C7 | −0.2 (2) | C7—C8—C14—C13 | −151.31 (14) |
| C5—C6—C7—C8 | −0.4 (2) | C17—C13—C14—C8 | 175.33 (13) |
| C6—C7—C8—C9 | 0.7 (2) | C12—C13—C14—C8 | −61.31 (16) |
| C6—C7—C8—C14 | −175.24 (15) | C18—C13—C14—C8 | 63.05 (16) |
| C7—C8—C9—C10 | −0.4 (2) | C17—C13—C14—C15 | 43.25 (15) |
| C14—C8—C9—C10 | 175.63 (14) | C12—C13—C14—C15 | 166.61 (13) |
| C7—C8—C9—C11 | 179.82 (14) | C18—C13—C14—C15 | −69.03 (16) |
| C14—C8—C9—C11 | −4.1 (2) | C8—C14—C15—C16 | −167.57 (14) |
| C2—C1—C10—C5 | 0.1 (2) | C13—C14—C15—C16 | −41.33 (17) |
| C2—C1—C10—C9 | 178.36 (15) | C14—C15—C16—C17 | 22.97 (18) |
| C6—C5—C10—C1 | 178.82 (14) | C12—C13—C17—O17 | 33.7 (3) |
| C4—C5—C10—C1 | −0.9 (2) | C14—C13—C17—O17 | 151.02 (18) |
| C6—C5—C10—C9 | 0.5 (2) | C18—C13—C17—O17 | −91.6 (2) |
| C4—C5—C10—C9 | −179.25 (14) | C12—C13—C17—C16 | −145.92 (15) |
| C8—C9—C10—C1 | −178.42 (14) | C14—C13—C17—C16 | −28.56 (16) |
| C11—C9—C10—C1 | 1.3 (2) | C18—C13—C17—C16 | 88.83 (16) |
| C8—C9—C10—C5 | −0.2 (2) | C15—C16—C17—O17 | −175.96 (18) |
| C11—C9—C10—C5 | 179.60 (13) | C15—C16—C17—C13 | 3.62 (19) |
| C8—C9—C11—C12 | 4.1 (2) |
| H··· | ||||
| O3—H3 | 0.95 (3) | 1.82 (3) | 2.7153 (17) | 157 (3) |