Literature DB >> 16819879

Experimental and theoretical electron density study of estrone.

Elizabeth A Zhurova1, Chérif F Matta, Nan Wu, Vladimir V Zhurov, A Alan Pinkerton.   

Abstract

The electron density and the electrostatic potential (ESP) distributions of estrone have been determined using X-ray diffraction analysis and compared with theoretical calculations in the solid and gas phases. X-ray diffraction measurements are performed with a Rigaku Rapid rotating anode diffractometer at 20 K. The electron density in the estrone crystal has been described with the multipole model, which allowed extensive topological analysis and calculation of the ESP. From DFT calculations in the solid state a theoretical X-ray diffraction data set has been produced and treated in the same way as the experimental data. Two sets of single molecule DFT calculations were performed: (a) An electron density distribution was obtained via a single-point calculation with a large basis set at the experimental geometry and subsequently analyzed according to the quantum theory of atoms in molecules (AIM) to obtain the bond and most atomic properties, and (b) another electron density distribution was obtained with a smaller basis set, but at a geometry optimized using the same basis set for the analysis of atomic energies. An interesting locally stabilizing hydrogen-hydrogen bond path linking H(1) and H(11B) is found which represents the first characterization of such bonding in a steroid molecule. AIM delocalization indices were shown to be well correlated to the experimental electron density at the bond critical points through an exponential relationship. The aromaticity of ring A, chemical bonding, the O(1)...O(2) distance necessary for estrogenic activity, and the electrostatic potential features are also discussed.

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Year:  2006        PMID: 16819879     DOI: 10.1021/ja061080v

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  10 in total

1.  An approximation of the Cioslowski–Mixon bond order indexes using the AlteQ approach.

Authors:  Elena Salmina; Maria A Grishina; Vladimir A Potemkin
Journal:  J Comput Aided Mol Des       Date:  2013-09       Impact factor: 3.686

Review 2.  The Relevance of Experimental Charge Density Analysis in Unraveling Noncovalent Interactions in Molecular Crystals.

Authors:  Sajesh P Thomas; Amol G Dikundwar; Sounak Sarkar; Mysore S Pavan; Rumpa Pal; Venkatesha R Hathwar; Tayur N Guru Row
Journal:  Molecules       Date:  2022-06-08       Impact factor: 4.927

3.  Combined quantum mechanics/molecular mechanics (QM/MM) methods to understand the charge density distribution of estrogens in the active site of estrogen receptors.

Authors:  C Kalaiarasi; S Manjula; P Kumaradhas
Journal:  RSC Adv       Date:  2019-12-10       Impact factor: 4.036

4.  Study on the Preparation of Estrone Molecularly Imprinted Polymers and Their Application in a Quartz Crystal Microbalance Sensor via a Computer-Assisted Design.

Authors:  Jin Liu; Xuhong Cai; Junbo Liu; Dadong Liang; Kaiyin Chen; Shanshan Tang; Bao Xu
Journal:  Int J Mol Sci       Date:  2022-05-20       Impact factor: 6.208

5.  Through-Space Effects of Substituents Dominate Molecular Electrostatic Potentials of Substituted Arenes.

Authors:  Steven E Wheeler; K N Houk
Journal:  J Chem Theory Comput       Date:  2009-09-08       Impact factor: 6.006

6.  Structure of Equilenin at 100 K: an estrone-related steroid.

Authors:  Christopher S Frampton; David D MacNicol
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-07-21

7.  A variable-temperature X-ray diffraction and theoretical study of conformational polymorphism in a complex organic molecule (DTC).

Authors:  Andrea Gionda; Giovanni Macetti; Laura Loconte; Silvia Rizzato; Ahmed M Orlando; Carlo Gatti; Leonardo Lo Presti
Journal:  RSC Adv       Date:  2018-11-14       Impact factor: 3.361

8.  Quantitative analysis of intermolecular interactions in orthorhombic rubrene.

Authors:  Venkatesha R Hathwar; Mattia Sist; Mads R V Jørgensen; Aref H Mamakhel; Xiaoping Wang; Christina M Hoffmann; Kunihisa Sugimoto; Jacob Overgaard; Bo Brummerstedt Iversen
Journal:  IUCrJ       Date:  2015-08-14       Impact factor: 4.769

Review 9.  Contributions of charge-density research to medicinal chemistry.

Authors:  Birger Dittrich; Chérif F Matta
Journal:  IUCrJ       Date:  2014-09-23       Impact factor: 4.769

10.  Is It Conjugated or Not? The Theoretical and Experimental Electron Density Map of Bonding in p-CH3CH2COC6H4-C≡C-C≡C-p-C6H4COCH3CH2.

Authors:  Przemysław Starynowicz; Sławomir Berski; Nurbey Gulia; Karolina Osowska; Tadeusz Lis; Sławomir Szafert
Journal:  Molecules       Date:  2020-09-24       Impact factor: 4.411

  10 in total

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