| Literature DB >> 28931947 |
Dan Xu1, Minghe Luo2, Fenglou Liu3, Dong Wang4, Xuejiao Pang1, Ting Zhao1, Lulin Xu1, Xia Wu1, Mingyu Xia5, Xiaolong Yang6.
Abstract
Six new cytochalasans, designated as 18-oxo-19,20-dihydrophomacin C (1), 18-oxo-19-methoxy-19,20- dihydrophomacin C (2), 18-oxo-19-hydroxyl-19,20-dihydrophomacin C (3), 19,20-dihydrophomacin C (4), 19-methoxy-19,20-dihydrophomacin C (5), 19-hydroxyl-19,20-dihydrophomacin C (6), and one new tyrosine-derived alkaloid named as gymnastatin Z (8), together with two known compounds, phomacin B (7) and triticone D (9), were isolated from a solid-substrate fermentation culture of Westerdykella dispersa which was derived from marine sediments. Their structures were established on the basis of spectroscopic analysis using 1D and 2D NMR techniques, and comparison of NMR data to those of known compounds. The anti-bacterial and cytotoxic activities assays of all isolated compounds were evaluated against eight human pathogenic bacteria and five human cancer cell lines, respectively. Compound 8 exhibited moderate activity against B. subtilis with MIC values of 12.5 µg/mL, while compounds 5, 7 and 8 displayed moderate inhibitory activities against five human cancer cell lines (MCF-7, HepG2, A549, HT-29 and SGC-7901), with IC50 values ranging from 25.6 to 83.7 µM.Entities:
Mesh:
Substances:
Year: 2017 PMID: 28931947 PMCID: PMC5607321 DOI: 10.1038/s41598-017-12327-1
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Structures of compounds 1–9.
Figure 2COSY and selected HMBC correlations of compounds 1–6 and 8.
Figure 3Key NOESY correlations of compounds 1–6.
Figure 4X-ray structure of compound 1.
1H NMR data for compounds 1–6 in CDCl3 (δ in ppm, J in Hz).
| Pos. | 1b | 2b | 3a | 4 a | 5a | 6a |
|---|---|---|---|---|---|---|
| 2 | 6.66, s | 6.07, s | 6.17, s | 6.24, s | 6.60, s | 6.20, s |
| 3 | 3.15, m | 3.18, m | 3.17, m | 3.17, m | 3.17, m | 3.16, m |
| 4 | 2.58, m | 2.58, m | 2.62, m | 2.70, m | 2.59, m | 2.77, dd (2.4, 5.6) |
| 5 | 2.58, m | 2.61, m | 2.55, m | 2.56, m | 2.59, m | 2.56, m |
| 7 | 5.35, s | 5.37, brs | 5.37, brs | 5.44, brs | 5.45, brs | 5.43, brs |
| 8 | 3.00, d (10.8) | 3.05, d (10.2) | 2.97, brd (9.2) | 3.08, d (10.8) | 3.21, m | 3.06, d (10.4) |
| 10a | 1.15, m | 1.16, m | 1.18, m | 1.16, m | 1.17, m | 1.18, m |
| 10b | — | 1.30, m | — | — | — | — |
| 11 | 1.18, d (7.2) | 1.21, d (6.6) | 1.21, d (6.8) | 1.22, d (7.2) | 1.21, d (6.6) | 1.24, d (7.2) |
| 12 | 1.72, s | 1.75, s | 1.74, s | 1.76, s | 1.76, s | 1.77, s |
| 13 | 6.23, d (10.8) | 6.25, d (10.8) | 6.23, d (10.2) | 6.19, d (10.8) | 6.06, d (11.0) | 6.19, d (11.2) |
| 15a | 2.17, d (12.6) | 2.15, d (10.8) | 2.16, brd (11.4) | 1.98, m | 1.88, m | 1.95, m |
| 15b | 1.80, t (12.0, 24.0) | 1.80, t (12.0, 24.6) | 1.89, m | 1.87, m | 1.76, m | 1.85, m |
| 16 | 2.58, m | 2.59, m | 2.55, m | 1.87, m | 1.76, m | 1.85, m |
| 17a | 2.60, m | 2.56, m | 2.78, m | 1.98, m | 1.98, m | 1.95, m |
| 17b | 2.21, d (15.0) | 2.30, d (16.0) | 2.55, m | 1.87, m | 1.88, m | 1.85, m |
| 18 | — | — | 3.76, m | 3.60, m | 3.60, m | |
| 19a | 2.76, m | 5.01, dd (2.4, 10.8) | 4.57, brd (8.0) | 1.39, m | 3.09, m | 3.42, m |
| 19b | — | — | — | 1.87, m | — | — |
| 20a | 3.85, ddd (2.4, 11.4, 17.4) | 2.92, m | 4.16, dd (11.1, 17.4) | 3.60, m | 4.11, dd (2.2, 18.7) | 4.20, d (17.6) |
| 20b | 2.40, ddd (,2.4, 7.8, 17.4) | — | 2.55, m | 1.92, m | 1.93, m | 1.90, m |
| 22 | 1.58, m | 1.56, m | 1.54, m | 1.55, m | 1.58, m | 1.54, m |
| 23/24 | 0.90, d (6.6) | 0.90, d (6.6) | 0.91, d (6.0) | 0.89, d (6.8) | 0.90, d (6.6) | 0.90, d (6.8) |
| 25 | 1.36, s | 1.35, s | 1.43, s | 1.55, s | 1.53, s | 1.54, s |
| 26a | 3.58, dd (4.8, 10.8) | 3.61, dd (5.4, 10.8) | 3.66, m | 3.60, m | 3.55, m | 3.56, m |
| 26b | 3.41, dd (6.0, 9.6) | 3.45, dd (7.2, 10.8) | 3.53, t (7.3, 17.0) | 3.35, m | 3.33 t (9.2, 18.5) | 3.34, t (9.2, 18.4) |
| 27 | — | 3.34, s | — | — | 3.51, s | — |
aSpectra were recorded at 400 MHz. bSpectra were recorded at 600 MHz.
13C NMR (100 MHz) data for compounds 1–6 in CDCl3 (δ in ppm).
| Pos. | 1 | 2 | 3 | 4 | 5 | 6 |
|---|---|---|---|---|---|---|
| 1 | 175.8, C | 174.9, C | 175.4, C | 175.6, C | 175.8, C | 174.8, C |
| 3 | 50.7, CH | 50.7, CH | 50.7, CH | 50.6, CH | 50.8, CH | 50.6, CH |
| 4 | 52.5, CH | 52.9, CH | 51.6, CH | 51.3, CH | 52.6, CH | 50.6, CH |
| 5 | 35.2, CH | 35.3, CH | 35.1, CH | 35.2, CH | 35.5, CH | 35.2, CH |
| 6 | 139.7, C | 139.8, C | 139.8, C | 139.8, C | 139.7, C | 140.2, C |
| 7 | 125.6, CH | 125.5, CH | 125.6, CH | 125.7, CH | 125.6, CH | 125.4, CH |
| 8 | 43.2, CH | 43.9, CH | 43.3, CH | 43.6, CH | 44.1, CH | 44.0, CH |
| 9 | 66.9, C | 65.1, C | 66.4, C | 67.6, C | 67.1, C | 67.5, C |
| 10 | 48.6, CH2 | 48.1, CH2 | 48.5, CH2 | 48.5, CH2 | 48.7, CH2 | 48.5, CH2 |
| 11 | 13.3, CH3 | 13.3, CH3 | 13.4, CH3 | 13.4, CH3 | 13.4, CH3 | 13.4, CH3 |
| 12 | 19.8, CH3 | 19.8, CH3 | 19.8, CH3 | 19.8, CH3 | 19.8, CH3 | 19.8, CH3 |
| 13 | 124.8, CH | 124.6, CH | 123.8, CH | 124.6, CH | 124.6, CH | 124.8, CH |
| 14 | 136.7, C | 137.2, C | 137.4, C | 135.2, C | 134.9, C | 135.2, C |
| 15 | 44.3, CH2 | 44.1, CH2 | 43.9, CH2 | 43.4, CH2 | 43.7, CH2 | 43.9, CH2 |
| 16 | 35.1, CH | 35.2, CH | 33.8, CH | 33.0, CH | 33.9, CH | 33.5, CH |
| 17 | 42.1, CH2 | 43.2, CH2 | 38.1, CH2 | 35.1, CH2 | 32.6, CH2 | 33.7, CH2 |
| 18 | 207.8, C | 204.3, C | 210.2, C | 68.8, CH | 72.2, CH | 71.3, CH |
| 19 | 38.0, CH2 | 78.1, CH | 74.2, CH | 29.2, CH2 | 78.8, CH | 70.3, CH |
| 20 | 37.4, CH2 | 42.5, CH2 | 45.6, CH2 | 35.4, CH2 | 42.9, CH2 | 43.5, CH2 |
| 21 | 208.1, C | 203.3, C | 206.8, C | 211.5, C | 211.2, C | 212.1, C |
| 22 | 25.0, CH | 25.0, CH | 25.0, CH | 24.9, CH | 24.9, CH | 25.0, CH |
| 23/24 | 21.4/23.6, CH3 | 21.5/23.6, CH3 | 21.5/23.5, CH3 | 21.5/23.5, CH3 | 21.5/23.6, CH3 | 21.4/23.5, CH3 |
| 25 | 15.3, CH3 | 15.3, CH3 | 15.6, CH3 | 16.1, CH3 | 16.2, CH3 | 16.1, CH3 |
| 26 | 67.4, CH2 | 67.3, CH2 | 67.3, CH2 | 68.3, CH2 | 69.1, CH2 | 68.7, CH2 |
| 27 | — | 56.9, CH3 | — | — | 58.1, CH3 | — |
Figure 5Calculated and experimental ECD spectra of compounds 2–4.
1H NMR and 13C NMR for compound 8 and gymnastatin H in CDCl3 (δ in ppm, J in Hz).
| Pos. | 8a | gymnastatin Hb | ||
|---|---|---|---|---|
|
|
|
|
| |
| 1a | 3.71, m | 64.4, CH2 | 172.3, C | |
| 1b | 3.61, dd (5.2, 10.8) | |||
| 2 | 4.22, m | 53.3, CH | 4.97, dt (7.8, 5.8) | 53.3, CH |
| 3 | 2.82, d (6.0) | 36.2, CH2 | a 3.06, dd (14.1, 5.8) | 37.3, CH2 |
| b 3.13, dd (14.1, 5.8) | ||||
| 4 | — | 129.1, C | — | 127.8, C |
| 5/9 | 7.06, d (8.0) | 130.2, CH | 6.97, d (8.5) | 130.5, CH |
| 6/8 | 6.78, d (7.6) | 115.6, CH | 6.74, d (8.5) | 115.5, CH |
| 7 | — | 154.8, C | — | 154.8, C |
| 10 | 5.86, d (7.6) | — | 5.94, d (7.8) | — |
| 11 | — | 167.6, C | — | 166.2, C |
| 12 | 5.71, d (15.2) | 117.2, CH | 5.73, d (15.3) | 117.1, CH |
| 13 | 7.23, d (15.2) | 147.1, CH | 7.24, d (15.3) | 147.2, CH |
| 14 | — | 130.8, C | — | 130.9, C |
| 15 | 5.64, d (9.6) | 148.2, CH | 5.64, d (9.8) | 148.2, CH |
| 16 | 2.49, m | 33.2, CH | 2.51, m | 33.2, CH |
| 17a | 1.27, m | 37.2, CH2 | 1.26, m | 37.3, CH2 |
| 17b | 1.33, m | 1.33, m | ||
| 18 | 1.24, m | 27.5, CH2 | 1.22, m | 27.5, CH2 |
| 19 | 1.24, m | 29.3, CH2 | 1.22, m | 29.4, CH2 |
| 20 | 1.24, m | 29.7, CH2 | 1.23, m | 31.8, CH2 |
| 21 | 1.24, m | 29.6, CH2 | 1.25, m | 22.7, CH2 |
| 22 | 1.24, m | 31.9, CH2 | 0.88, t (6.7) | 14.1, CH3 |
| 23 | 1.33, m | 22.7, CH2 | 1.75, s | 12.5, CH3 |
| 24 | 0.88, t (6.4, 13.6) | 14.1, CH3 | 0.97, d (6.6) | 20.6, CH3 |
| 25 | 1.74, s | 12.5, CH3 | — | — |
| 26 | 0.97, d (6.8) | 20.5, CH3 | — | — |
aSpectra were recorded at 400 MHz for 1H and at 100 MHz for 13C in CDCl3.
bSpectra were recorded at 300 MHz 1H and at 75 MHz for 13C in CDCl3.