| Literature DB >> 28926974 |
Beyza Bulutoglu1, Scott Banta2.
Abstract
The isolated Block V repeats-in-toxin (RTX) peptide domain of adenylate cyclase (CyaA) from Bordetella pertussis reversibly folds into a β-roll secondary structure upon calcium binding. In this review, we discuss how the conformationally dynamic nature of the peptide is being engineered and employed as a switching mechanism to mediate different protein functions and protein-protein interactions. The peptide has been used as a scaffold for diverse applications including: a precipitation tag for bioseparations, a cross-linking domain for protein hydrogel formation and as an alternative scaffold for biomolecular recognition applications. Proteins and peptides such as the RTX domains that exhibit natural stimulus-responsive behavior are valuable building blocks for emerging synthetic biology applications.Entities:
Keywords: RTX domain; biomolecular recognition; bioseparations; hydrogels; protein engineering; β-roll domain
Mesh:
Substances:
Year: 2017 PMID: 28926974 PMCID: PMC5618222 DOI: 10.3390/toxins9090289
Source DB: PubMed Journal: Toxins (Basel) ISSN: 2072-6651 Impact factor: 4.546
Figure 1The structure of the Block V RTX domain (β-roll) and its protein sequence. The bound calcium ions are shown in red. Positions where site-directed mutagenesis has been performed are highlighted in green (eight residues on each face of the peptide [66,67,68,69] and Asp1570 [70]). All figures were rendered in PyMOL using PDB file 5CVW.
Figure 2Schematic diagrams of examples of engineered Block V RTX domain variations. (A) Truncated peptides were constructed to examine the minimal natural C-terminal flanking sequence needed for calcium responsiveness [61]. Cyan fluorescence protein (CYP) and yellow fluorescence protein (YFP) were used to characterize the conformational change of the domain by FRET, and this led to the discovery that YFP could serve as a C-terminal capping group [70]. Tethering of the RTX domain to a QCM crystal allowed the surface to function as a terminal capping group [71]; (B) rearranged RTX domains were created to explore sequence modularity and functionality. Rearranged RTX repeats were built with or without the capping group [64]; and (C) different numbers of full-length RTX domains (each with C-terminal caps) were concatenated with linkers and used in biomolecular recognition and protein hydrogel studies [68,69].
Synthetic RTX peptides with their sequences and number of repeats.
| Sequence | No. of Repeats | Reference |
|---|---|---|
| GGSGNDNLS | 8 | [ |
| GGSGSDLLK | - | [ |
| GGAGNDTLY | 5, 9, 13, 17 | [ |
Figure 3Engineered RTX domains for biotechnology applications. (A) Hydrogel-forming RTX peptides with their mutations highlighted in magenta. Bound calcium ions are shown in red. Leu β-roll has leucine residues at eight positions on one peptide face whereas DLeu β-roll has leucine residues on both faces; (B) images of proteinaceous hydrogels formed by these mutant constructs with hydrophobic faces; (C) PN406 mutant selected against lysozyme target via ribosome display. The randomized positions for library construction are shown in yellow in the primary sequence. The concatemer of this mutant was used for affinity chromatography applications where it captured the target molecule (lysozyme) in the presence of calcium, as shown in the picture on the right. This mutant was fused to the DLeu β-roll. The hydrogel formed by this construct retained the FITC-labeled target lysozyme. Leu, DLeu, and PN406 β-rolls were rendered in PyMOL using PDB file 5CVW.