Literature DB >> 21715155

DARPins and other repeat protein scaffolds: advances in engineering and applications.

Ykelien L Boersma1, Andreas Plückthun.   

Abstract

Antibodies have long been regarded as the only class of binding proteins. With the emergence of protein engineering techniques, new binding proteins based on alternative scaffolds have been designed. Additionally, modern technologies for selection and evolution from libraries are independent of the antibody scaffold and could thus be readily used for obtaining specific binding proteins. One important group of alternative scaffolds is based on repeat proteins. Nature is widely using these proteins to modulate protein-protein interactions, and even in the adaptive immune system of jawless vertebrates; the step to their application as an alternative to antibodies seems therefore logical. In this review, progress on DARPins and other repeat protein scaffolds will be discussed. Advances in their design as well as novel applications will be highlighted.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21715155     DOI: 10.1016/j.copbio.2011.06.004

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  78 in total

1.  Structure-based optimization of designed Armadillo-repeat proteins.

Authors:  Chaithanya Madhurantakam; Gautham Varadamsetty; Markus G Grütter; Andreas Plückthun; Peer R E Mittl
Journal:  Protein Sci       Date:  2012-05-24       Impact factor: 6.725

2.  A hot-spot motif characterizes the interface between a designed ankyrin-repeat protein and its target ligand.

Authors:  Luthur Siu-Lun Cheung; Manu Kanwar; Marc Ostermeier; Konstantinos Konstantopoulos
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

3.  Designed ankyrin repeat proteins as scaffolds for multivalent recognition.

Authors:  Jessica J Hollenbeck; Derek J Danner; Rachel M Landgren; Thomas K Rainbolt; Danielle S Roberts
Journal:  Biomacromolecules       Date:  2012-06-21       Impact factor: 6.988

4.  Optimization of designed armadillo repeat proteins by molecular dynamics simulations and NMR spectroscopy.

Authors:  Pietro Alfarano; Gautham Varadamsetty; Christina Ewald; Fabio Parmeggiani; Riccardo Pellarin; Oliver Zerbe; Andreas Plückthun; Amedeo Caflisch
Journal:  Protein Sci       Date:  2012-09       Impact factor: 6.725

5.  A high-affinity protein binder that blocks the IL-6/STAT3 signaling pathway effectively suppresses non-small cell lung cancer.

Authors:  Joong-Jae Lee; Hyun Jung Kim; Chul-Su Yang; Hyun-Ho Kyeong; Jung-Min Choi; Da-Eun Hwang; Jae-Min Yuk; Keunwan Park; Yu Jung Kim; Seung-Goo Lee; Dongsup Kim; Eun-Kyeong Jo; Hae-Kap Cheong; Hak-Sung Kim
Journal:  Mol Ther       Date:  2014-03-31       Impact factor: 11.454

Review 6.  Foundations for the design and implementation of synthetic genetic circuits.

Authors:  Adrian L Slusarczyk; Allen Lin; Ron Weiss
Journal:  Nat Rev Genet       Date:  2012-05-18       Impact factor: 53.242

7.  Scalable high throughput selection from phage-displayed synthetic antibody libraries.

Authors:  Shane Miersch; Zhijian Li; Rachel Hanna; Megan E McLaughlin; Michael Hornsby; Tet Matsuguchi; Marcin Paduch; Annika Sääf; Jim Wells; Shohei Koide; Anthony Kossiakoff; Sachdev S Sidhu
Journal:  J Vis Exp       Date:  2015-01-17       Impact factor: 1.355

8.  Computational tools help improve protein stability but with a solubility tradeoff.

Authors:  Aron Broom; Zachary Jacobi; Kyle Trainor; Elizabeth M Meiering
Journal:  J Biol Chem       Date:  2017-07-14       Impact factor: 5.157

9.  DARPin-targeting of measles virus: unique bispecificity, effective oncolysis, and enhanced safety.

Authors:  Katrin Friedrich; Jan Rh Hanauer; Steffen Prüfer; Robert C Münch; Iris Völker; Christodoulos Filippis; Christian Jost; Kay-Martin Hanschmann; Roberto Cattaneo; Kah-Whye Peng; Andreas Plückthun; Christian J Buchholz; Klaus Cichutek; Michael D Mühlebach
Journal:  Mol Ther       Date:  2013-02-05       Impact factor: 11.454

10.  Structural and functional analysis of phosphorylation-specific binders of the kinase ERK from designed ankyrin repeat protein libraries.

Authors:  Lutz Kummer; Petra Parizek; Peter Rube; Bastian Millgramm; Anke Prinz; Peer R E Mittl; Melanie Kaufholz; Bastian Zimmermann; Friedrich W Herberg; Andreas Plückthun
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-27       Impact factor: 11.205

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