Literature DB >> 28926184

Experience-dependent neural plasticity, learning, and memory in the era of epitranscriptomics.

L J Leighton1, K Ke2, E L Zajaczkowski1, J Edmunds1, R C Spitale2, T W Bredy1.   

Abstract

In this short review, we highlight recent findings in the emerging field of epitranscriptomic mechanisms and discuss their potential role in neural plasticity, learning and memory. These include the influence of RNA modifications on activity-induced RNA structure states, RNA editing and RNA localization, and how qualitative state changes in RNA increase the functional diversity and information-carrying capacity of RNA molecules. We predict that RNA modifications may be just as important for synaptic plasticity and memory as quantitative changes in transcript and protein abundance, but with the added advantage of not being required to signal back to the nucleus, and therefore better suited to be coordinated with the temporal dynamics of learning.
© 2017 John Wiley & Sons Ltd and International Behavioural and Neural Genetics Society.

Entities:  

Keywords:  RNA modification; brain; epitranscriptomics; memory; neuron; plasticity

Mesh:

Year:  2017        PMID: 28926184      PMCID: PMC5858957          DOI: 10.1111/gbb.12426

Source DB:  PubMed          Journal:  Genes Brain Behav        ISSN: 1601-183X            Impact factor:   3.449


  68 in total

1.  Disruption of dendritic translation of CaMKIIalpha impairs stabilization of synaptic plasticity and memory consolidation.

Authors:  Stephan Miller; Masahiro Yasuda; Jennifer K Coats; Ying Jones; Maryann E Martone; Mark Mayford
Journal:  Neuron       Date:  2002-10-24       Impact factor: 17.173

Review 2.  Insights into RNA structure and function from genome-wide studies.

Authors:  Stefanie A Mortimer; Mary Anne Kidwell; Jennifer A Doudna
Journal:  Nat Rev Genet       Date:  2014-05-13       Impact factor: 53.242

3.  Reversible methylation of m6Am in the 5' cap controls mRNA stability.

Authors:  Jan Mauer; Xiaobing Luo; Alexandre Blanjoie; Xinfu Jiao; Anya V Grozhik; Deepak P Patil; Bastian Linder; Brian F Pickering; Jean-Jacques Vasseur; Qiuying Chen; Steven S Gross; Olivier Elemento; Françoise Debart; Megerditch Kiledjian; Samie R Jaffrey
Journal:  Nature       Date:  2016-12-21       Impact factor: 49.962

4.  Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome.

Authors:  Xiaoyu Li; Ping Zhu; Shiqing Ma; Jinghui Song; Jinyi Bai; Fangfang Sun; Chengqi Yi
Journal:  Nat Chem Biol       Date:  2015-06-15       Impact factor: 15.040

5.  Evolving insights into RNA modifications and their functional diversity in the brain.

Authors:  Sarah Nainar; Paul R Marshall; Christina R Tyler; Robert C Spitale; Timothy W Bredy
Journal:  Nat Neurosci       Date:  2016-09-27       Impact factor: 24.884

6.  Experience-Dependent Accumulation of N6-Methyladenosine in the Prefrontal Cortex Is Associated with Memory Processes in Mice.

Authors:  Jocelyn Widagdo; Qiong-Yi Zhao; Marie-Jeanne Kempen; Men Chee Tan; Vikram S Ratnu; Wei Wei; Laura Leighton; Paola A Spadaro; Janette Edson; Victor Anggono; Timothy W Bredy
Journal:  J Neurosci       Date:  2016-06-22       Impact factor: 6.167

Review 7.  Deciphering the functions and regulation of brain-enriched A-to-I RNA editing.

Authors:  Jin Billy Li; George M Church
Journal:  Nat Neurosci       Date:  2013-10-28       Impact factor: 24.884

8.  YTHDF2 destabilizes m(6)A-containing RNA through direct recruitment of the CCR4-NOT deadenylase complex.

Authors:  Hao Du; Ya Zhao; Jinqiu He; Yao Zhang; Hairui Xi; Mofang Liu; Jinbiao Ma; Ligang Wu
Journal:  Nat Commun       Date:  2016-08-25       Impact factor: 14.919

9.  Spatial codes in dendritic BC1 RNA.

Authors:  Ilham A Muslimov; Anna Iacoangeli; Jürgen Brosius; Henri Tiedge
Journal:  J Cell Biol       Date:  2006-10-30       Impact factor: 10.539

10.  Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq.

Authors:  Dan Dominissini; Sharon Moshitch-Moshkovitz; Schraga Schwartz; Mali Salmon-Divon; Lior Ungar; Sivan Osenberg; Karen Cesarkas; Jasmine Jacob-Hirsch; Ninette Amariglio; Martin Kupiec; Rotem Sorek; Gideon Rechavi
Journal:  Nature       Date:  2012-04-29       Impact factor: 49.962

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  16 in total

1.  Bioorthogonal Metabolic Labeling of Nascent RNA in Neurons Improves the Sensitivity of Transcriptome-Wide Profiling.

Authors:  Esmi L Zajaczkowski; Qiong-Yi Zhao; Zong Hong Zhang; Xiang Li; Wei Wei; Paul R Marshall; Laura J Leighton; Sarah Nainar; Chao Feng; Robert C Spitale; Timothy W Bredy
Journal:  ACS Chem Neurosci       Date:  2018-06-15       Impact factor: 4.418

Review 2.  Intrinsic mechanisms of neuronal axon regeneration.

Authors:  Marcus Mahar; Valeria Cavalli
Journal:  Nat Rev Neurosci       Date:  2018-06       Impact factor: 34.870

3.  Layered-up regulation in the developing brain.

Authors:  J. David Sweatt
Journal:  Nature       Date:  2017-11-23       Impact factor: 49.962

Review 4.  How the epigenome integrates information and reshapes the synapse.

Authors:  Rianne R Campbell; Marcelo A Wood
Journal:  Nat Rev Neurosci       Date:  2019-03       Impact factor: 34.870

Review 5.  The m6A epitranscriptome: transcriptome plasticity in brain development and function.

Authors:  Ido Livneh; Sharon Moshitch-Moshkovitz; Ninette Amariglio; Gideon Rechavi; Dan Dominissini
Journal:  Nat Rev Neurosci       Date:  2019-12-05       Impact factor: 34.870

6.  Subcellular relocalization and nuclear redistribution of the RNA methyltransferases TRMT1 and TRMT1L upon neuronal activation.

Authors:  Nicky Jonkhout; Sonia Cruciani; Helaine Graziele Santos Vieira; Julia Tran; Huanle Liu; Ganqiang Liu; Russell Pickford; Dominik Kaczorowski; Gloria R Franco; Franz Vauti; Noelia Camacho; Seyedeh Sedigheh Abedini; Hossein Najmabadi; Lluís Ribas de Pouplana; Daniel Christ; Nicole Schonrock; John S Mattick; Eva Maria Novoa
Journal:  RNA Biol       Date:  2021-02-15       Impact factor: 4.652

Review 7.  Amygdala-hippocampal interactions in synaptic plasticity and memory formation.

Authors:  Rafael Roesler; Marise B Parent; Ryan T LaLumiere; Christa K McIntyre
Journal:  Neurobiol Learn Mem       Date:  2021-07-21       Impact factor: 3.109

Review 8.  Functional Interplay between Small Non-Coding RNAs and RNA Modification in the Brain.

Authors:  Laura J Leighton; Timothy W Bredy
Journal:  Noncoding RNA       Date:  2018-06-07

Review 9.  Emerging Role of m6 A Methylome in Brain Development: Implications for Neurological Disorders and Potential Treatment.

Authors:  Godwin Sokpor; Yuanbin Xie; Huu P Nguyen; Tran Tuoc
Journal:  Front Cell Dev Biol       Date:  2021-05-19

Review 10.  The role m6A RNA methylation is CNS development and glioma pathogenesis.

Authors:  Ting Pan; Fan Wu; Liwen Li; Shiyan Wu; Fang Zhou; Ping Zhang; Caixing Sun; Liang Xia
Journal:  Mol Brain       Date:  2021-07-19       Impact factor: 4.041

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