Literature DB >> 28900812

Radiomic features predict Ki-67 expression level and survival in lower grade gliomas.

Yiming Li1, Zenghui Qian1, Kaibin Xu2, Kai Wang3, Xing Fan1, Shaowu Li1, Xing Liu4, Yinyan Wang5, Tao Jiang6,7,8.   

Abstract

To investigate the radiomic features associated with Ki-67 expression in lower grade gliomas and assess the prognostic values of these features. Patients with lower grade gliomas (n = 117) were randomly assigned into the training (n = 78) and validation (n = 39) sets. A total of 431 radiological features were extracted from each patient. Differential radiological features between the low and high Ki-67 expression groups were screened by significance analysis of microarrays. Then, generalized linear analysis was performed to select features that could predict the Ki-67 expression level. Predictive efficiencies were further evaluated in the validation set. Cox regression analysis was performed to investigate the prognostic values of Ki-67 expression level and Ki-67-related radiological features. A group of nine radiological features were screened for prediction of Ki-67 expression status; these achieved accuracies of 83.3% and 88.6% (areas under the curves, 0.91 and 0.93) in the training and validation sets, respectively. Of these features, only spherical disproportion (SD) was found to be a prognostic factor. Patients in the high SD group exhibited worse outcomes in the whole cohort (overall survival, p < 0.0001; progression-free survival, p < 0.0001). Ki-67 expression level and SD were independent prognostic factors in the multivariate Cox regression analysis. This study identified a radiomic signature for prediction of Ki-67 expression level as well as a prognostic radiological feature in patients with lower grade gliomas.

Entities:  

Keywords:  Ki-67; Lower grade gliomas; Prediction; Radiogenomics; Survival

Mesh:

Substances:

Year:  2017        PMID: 28900812     DOI: 10.1007/s11060-017-2576-8

Source DB:  PubMed          Journal:  J Neurooncol        ISSN: 0167-594X            Impact factor:   4.130


  28 in total

1.  Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.

Authors:  Daniel J Brat; Roel G W Verhaak; Kenneth D Aldape; W K Alfred Yung; Sofie R Salama; Lee A D Cooper; Esther Rheinbay; C Ryan Miller; Mark Vitucci; Olena Morozova; A Gordon Robertson; Houtan Noushmehr; Peter W Laird; Andrew D Cherniack; Rehan Akbani; Jason T Huse; Giovanni Ciriello; Laila M Poisson; Jill S Barnholtz-Sloan; Mitchel S Berger; Cameron Brennan; Rivka R Colen; Howard Colman; Adam E Flanders; Caterina Giannini; Mia Grifford; Antonio Iavarone; Rajan Jain; Isaac Joseph; Jaegil Kim; Katayoon Kasaian; Tom Mikkelsen; Bradley A Murray; Brian Patrick O'Neill; Lior Pachter; Donald W Parsons; Carrie Sougnez; Erik P Sulman; Scott R Vandenberg; Erwin G Van Meir; Andreas von Deimling; Hailei Zhang; Daniel Crain; Kevin Lau; David Mallery; Scott Morris; Joseph Paulauskis; Robert Penny; Troy Shelton; Mark Sherman; Peggy Yena; Aaron Black; Jay Bowen; Katie Dicostanzo; Julie Gastier-Foster; Kristen M Leraas; Tara M Lichtenberg; Christopher R Pierson; Nilsa C Ramirez; Cynthia Taylor; Stephanie Weaver; Lisa Wise; Erik Zmuda; Tanja Davidsen; John A Demchok; Greg Eley; Martin L Ferguson; Carolyn M Hutter; Kenna R Mills Shaw; Bradley A Ozenberger; Margi Sheth; Heidi J Sofia; Roy Tarnuzzer; Zhining Wang; Liming Yang; Jean Claude Zenklusen; Brenda Ayala; Julien Baboud; Sudha Chudamani; Mark A Jensen; Jia Liu; Todd Pihl; Rohini Raman; Yunhu Wan; Ye Wu; Adrian Ally; J Todd Auman; Miruna Balasundaram; Saianand Balu; Stephen B Baylin; Rameen Beroukhim; Moiz S Bootwalla; Reanne Bowlby; Christopher A Bristow; Denise Brooks; Yaron Butterfield; Rebecca Carlsen; Scott Carter; Lynda Chin; Andy Chu; Eric Chuah; Kristian Cibulskis; Amanda Clarke; Simon G Coetzee; Noreen Dhalla; Tim Fennell; Sheila Fisher; Stacey Gabriel; Gad Getz; Richard Gibbs; Ranabir Guin; Angela Hadjipanayis; D Neil Hayes; Toshinori Hinoue; Katherine Hoadley; Robert A Holt; Alan P Hoyle; Stuart R Jefferys; Steven Jones; Corbin D Jones; Raju Kucherlapati; Phillip H Lai; Eric Lander; Semin Lee; Lee Lichtenstein; Yussanne Ma; Dennis T Maglinte; Harshad S Mahadeshwar; Marco A Marra; Michael Mayo; Shaowu Meng; Matthew L Meyerson; Piotr A Mieczkowski; Richard A Moore; Lisle E Mose; Andrew J Mungall; Angeliki Pantazi; Michael Parfenov; Peter J Park; Joel S Parker; Charles M Perou; Alexei Protopopov; Xiaojia Ren; Jeffrey Roach; Thaís S Sabedot; Jacqueline Schein; Steven E Schumacher; Jonathan G Seidman; Sahil Seth; Hui Shen; Janae V Simons; Payal Sipahimalani; Matthew G Soloway; Xingzhi Song; Huandong Sun; Barbara Tabak; Angela Tam; Donghui Tan; Jiabin Tang; Nina Thiessen; Timothy Triche; David J Van Den Berg; Umadevi Veluvolu; Scot Waring; Daniel J Weisenberger; Matthew D Wilkerson; Tina Wong; Junyuan Wu; Liu Xi; Andrew W Xu; Lixing Yang; Travis I Zack; Jianhua Zhang; B Arman Aksoy; Harindra Arachchi; Chris Benz; Brady Bernard; Daniel Carlin; Juok Cho; Daniel DiCara; Scott Frazer; Gregory N Fuller; JianJiong Gao; Nils Gehlenborg; David Haussler; David I Heiman; Lisa Iype; Anders Jacobsen; Zhenlin Ju; Sol Katzman; Hoon Kim; Theo Knijnenburg; Richard Bailey Kreisberg; Michael S Lawrence; William Lee; Kalle Leinonen; Pei Lin; Shiyun Ling; Wenbin Liu; Yingchun Liu; Yuexin Liu; Yiling Lu; Gordon Mills; Sam Ng; Michael S Noble; Evan Paull; Arvind Rao; Sheila Reynolds; Gordon Saksena; Zack Sanborn; Chris Sander; Nikolaus Schultz; Yasin Senbabaoglu; Ronglai Shen; Ilya Shmulevich; Rileen Sinha; Josh Stuart; S Onur Sumer; Yichao Sun; Natalie Tasman; Barry S Taylor; Doug Voet; Nils Weinhold; John N Weinstein; Da Yang; Kosuke Yoshihara; Siyuan Zheng; Wei Zhang; Lihua Zou; Ty Abel; Sara Sadeghi; Mark L Cohen; Jenny Eschbacher; Eyas M Hattab; Aditya Raghunathan; Matthew J Schniederjan; Dina Aziz; Gene Barnett; Wendi Barrett; Darell D Bigner; Lori Boice; Cathy Brewer; Chiara Calatozzolo; Benito Campos; Carlos Gilberto Carlotti; Timothy A Chan; Lucia Cuppini; Erin Curley; Stefania Cuzzubbo; Karen Devine; Francesco DiMeco; Rebecca Duell; J Bradley Elder; Ashley Fehrenbach; Gaetano Finocchiaro; William Friedman; Jordonna Fulop; Johanna Gardner; Beth Hermes; Christel Herold-Mende; Christine Jungk; Ady Kendler; Norman L Lehman; Eric Lipp; Ouida Liu; Randy Mandt; Mary McGraw; Roger Mclendon; Christopher McPherson; Luciano Neder; Phuong Nguyen; Ardene Noss; Raffaele Nunziata; Quinn T Ostrom; Cheryl Palmer; Alessandro Perin; Bianca Pollo; Alexander Potapov; Olga Potapova; W Kimryn Rathmell; Daniil Rotin; Lisa Scarpace; Cathy Schilero; Kelly Senecal; Kristen Shimmel; Vsevolod Shurkhay; Suzanne Sifri; Rosy Singh; Andrew E Sloan; Kathy Smolenski; Susan M Staugaitis; Ruth Steele; Leigh Thorne; Daniela P C Tirapelli; Andreas Unterberg; Mahitha Vallurupalli; Yun Wang; Ronald Warnick; Felicia Williams; Yingli Wolinsky; Sue Bell; Mara Rosenberg; Chip Stewart; Franklin Huang; Jonna L Grimsby; Amie J Radenbaugh; Jianan Zhang
Journal:  N Engl J Med       Date:  2015-06-10       Impact factor: 91.245

2.  How to avoid mismodelling in GLM-based fMRI data analysis: cross-validated Bayesian model selection.

Authors:  Joram Soch; John-Dylan Haynes; Carsten Allefeld
Journal:  Neuroimage       Date:  2016-07-28       Impact factor: 6.556

3.  Large-scale Radiomic Profiling of Recurrent Glioblastoma Identifies an Imaging Predictor for Stratifying Anti-Angiogenic Treatment Response.

Authors:  Philipp Kickingereder; Michael Götz; John Muschelli; Antje Wick; Ulf Neuberger; Russell T Shinohara; Martin Sill; Martha Nowosielski; Heinz-Peter Schlemmer; Alexander Radbruch; Wolfgang Wick; Martin Bendszus; Klaus H Maier-Hein; David Bonekamp
Journal:  Clin Cancer Res       Date:  2016-10-10       Impact factor: 12.531

4.  Molecular classification of gliomas based on whole genome gene expression: a systematic report of 225 samples from the Chinese Glioma Cooperative Group.

Authors:  Wei Yan; Wei Zhang; Gan You; Junxia Zhang; Lei Han; Zhaoshi Bao; Yongzhi Wang; Yanwei Liu; Chuanlu Jiang; Chunsheng Kang; Yongping You; Tao Jiang
Journal:  Neuro Oncol       Date:  2012-10-22       Impact factor: 12.300

5.  Radiogenomics: what it is and why it is important.

Authors:  Maciej A Mazurowski
Journal:  J Am Coll Radiol       Date:  2015-08       Impact factor: 5.532

6.  Magnetic resonance image features identify glioblastoma phenotypic subtypes with distinct molecular pathway activities.

Authors:  Haruka Itakura; Achal S Achrol; Lex A Mitchell; Joshua J Loya; Tiffany Liu; Erick M Westbroek; Abdullah H Feroze; Scott Rodriguez; Sebastian Echegaray; Tej D Azad; Kristen W Yeom; Sandy Napel; Daniel L Rubin; Steven D Chang; Griffith R Harsh; Olivier Gevaert
Journal:  Sci Transl Med       Date:  2015-09-02       Impact factor: 17.956

7.  Multimodal MRI features predict isocitrate dehydrogenase genotype in high-grade gliomas.

Authors:  Biqi Zhang; Ken Chang; Shakti Ramkissoon; Shyam Tanguturi; Wenya Linda Bi; David A Reardon; Keith L Ligon; Brian M Alexander; Patrick Y Wen; Raymond Y Huang
Journal:  Neuro Oncol       Date:  2016-06-26       Impact factor: 13.029

8.  Radiogenomic mapping of edema/cellular invasion MRI-phenotypes in glioblastoma multiforme.

Authors:  Pascal O Zinn; Bhanu Mahajan; Bhanu Majadan; Pratheesh Sathyan; Sanjay K Singh; Sadhan Majumder; Ferenc A Jolesz; Rivka R Colen
Journal:  PLoS One       Date:  2011-10-05       Impact factor: 3.240

9.  Considerations when using the significance analysis of microarrays (SAM) algorithm.

Authors:  Ola Larsson; Claes Wahlestedt; James A Timmons
Journal:  BMC Bioinformatics       Date:  2005-05-29       Impact factor: 3.169

10.  Generalized Linear Model (GLM) framework for the association of host variables and viral strains with liver fibrosis in HCV/HIV coinfected patients.

Authors:  Marina Matas; Antònia Picornell; Carmen Cifuentes; Antoni Payeras; Antoni Bassa; Francesc Homar; Fernando González-Candelas; F Xavier López-Labrador; Andrés Moya; Maria M Ramon; José A Castro
Journal:  Infect Genet Evol       Date:  2012-11-19       Impact factor: 3.342

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  20 in total

1.  Do the combination of multiparametric MRI-based radiomics and selected blood inflammatory markers predict the grade and proliferation in glioma patients?

Authors:  Jing Guo; Jialiang Ren; Junkang Shen; Rui Cheng; Yexin He
Journal:  Diagn Interv Radiol       Date:  2021-05       Impact factor: 2.630

2.  Predicting the Ki-67 proliferation index in pulmonary adenocarcinoma patients presenting with subsolid nodules: construction of a nomogram based on CT images.

Authors:  Jing Yan; Xing Xue; Chen Gao; Yifan Guo; Linyu Wu; Changyu Zhou; Feng Chen; Maosheng Xu
Journal:  Quant Imaging Med Surg       Date:  2022-01

3.  Multiparametric and multiregional diffusion features help predict molecule information, grade and survival in lower-grade gliomas: a feasibility study.

Authors:  Hai Lin; Yanwen Xu; Lei Chen; Peng Na; Weiping Li
Journal:  Br J Radiol       Date:  2019-08-09       Impact factor: 3.039

Review 4.  MRI biomarkers in neuro-oncology.

Authors:  Marion Smits
Journal:  Nat Rev Neurol       Date:  2021-06-20       Impact factor: 42.937

5.  MRI Features May Predict Molecular Features of Glioblastoma in Isocitrate Dehydrogenase Wild-Type Lower-Grade Gliomas.

Authors:  C J Park; K Han; H Kim; S S Ahn; D Choi; Y W Park; J H Chang; S H Kim; S Cha; S-K Lee
Journal:  AJNR Am J Neuroradiol       Date:  2021-01-28       Impact factor: 3.825

6.  Brain Tumor Imaging: Applications of Artificial Intelligence.

Authors:  Muhammad Afridi; Abhi Jain; Mariam Aboian; Seyedmehdi Payabvash
Journal:  Semin Ultrasound CT MR       Date:  2022-02-11       Impact factor: 1.875

Review 7.  The Applications of Radiomics in Precision Diagnosis and Treatment of Oncology: Opportunities and Challenges.

Authors:  Zhenyu Liu; Shuo Wang; Di Dong; Jingwei Wei; Cheng Fang; Xuezhi Zhou; Kai Sun; Longfei Li; Bo Li; Meiyun Wang; Jie Tian
Journal:  Theranostics       Date:  2019-02-12       Impact factor: 11.556

8.  Radiogenomics predicts the expression of microRNA-1246 in the serum of esophageal cancer patients.

Authors:  Isamu Hoshino; Hajime Yokota; Fumitaka Ishige; Yosuke Iwatate; Nobuyoshi Takeshita; Hiroki Nagase; Takashi Uno; Hisahiro Matsubara
Journal:  Sci Rep       Date:  2020-02-13       Impact factor: 4.379

9.  High-order radiomics features based on T2 FLAIR MRI predict multiple glioma immunohistochemical features: A more precise and personalized gliomas management.

Authors:  Jing Li; Siyun Liu; Ying Qin; Yan Zhang; Ning Wang; Huaijun Liu
Journal:  PLoS One       Date:  2020-01-22       Impact factor: 3.240

10.  Preoperative Radiomics Analysis of 1p/19q Status in WHO Grade II Gliomas.

Authors:  Ziwen Fan; Zhiyan Sun; Shengyu Fang; Yiming Li; Xing Liu; Yucha Liang; Yukun Liu; Chunyao Zhou; Qiang Zhu; Hong Zhang; Tianshi Li; Shaowu Li; Tao Jiang; Yinyan Wang; Lei Wang
Journal:  Front Oncol       Date:  2021-07-06       Impact factor: 6.244

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