Literature DB >> 28898398

Integrating high-throughput screening and sequencing for monoclonal antibody discovery and engineering.

Cristina Parola1,2, Daniel Neumeier1, Sai T Reddy1.   

Abstract

Monoclonal antibody discovery and engineering is a field that has traditionally been dominated by high-throughput screening platforms (e.g. hybridomas and surface display). In recent years the emergence of high-throughput sequencing has made it possible to obtain large-scale information on antibody repertoire diversity. Additionally, it has now become more routine to perform high-throughput sequencing on antibody repertoires to also directly discover antibodies. In this review, we provide an overview of the progress in this field to date and show how high-throughput screening and sequencing are converging to deliver powerful new workflows for monoclonal antibody discovery and engineering.
© 2017 John Wiley & Sons Ltd.

Keywords:  antibodies; bioinformatics; high-throughput sequencing; surface display

Mesh:

Substances:

Year:  2017        PMID: 28898398      PMCID: PMC5721244          DOI: 10.1111/imm.12838

Source DB:  PubMed          Journal:  Immunology        ISSN: 0019-2805            Impact factor:   7.397


  111 in total

1.  Identifying specificity groups in the T cell receptor repertoire.

Authors:  Jacob Glanville; Huang Huang; Allison Nau; Olivia Hatton; Lisa E Wagar; Florian Rubelt; Xuhuai Ji; Arnold Han; Sheri M Krams; Christina Pettus; Nikhil Haas; Cecilia S Lindestam Arlehamn; Alessandro Sette; Scott D Boyd; Thomas J Scriba; Olivia M Martinez; Mark M Davis
Journal:  Nature       Date:  2017-06-21       Impact factor: 49.962

2.  Ribosome display: selecting and evolving proteins in vitro that specifically bind to a target.

Authors:  Christian Zahnd; Patrick Amstutz; Andreas Plückthun
Journal:  Nat Methods       Date:  2007-03       Impact factor: 28.547

3.  Construction of a rationally designed antibody platform for sequencing-assisted selection.

Authors:  H Benjamin Larman; George Jing Xu; Natalya N Pavlova; Stephen J Elledge
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-11       Impact factor: 11.205

4.  A fully synthetic human Fab antibody library based on fixed VH/VL framework pairings with favorable biophysical properties.

Authors:  Thomas Tiller; Ingrid Schuster; Dorothée Deppe; Katja Siegers; Ralf Strohner; Tanja Herrmann; Marion Berenguer; Dominique Poujol; Jennifer Stehle; Yvonne Stark; Martin Heßling; Daniela Daubert; Karin Felderer; Stefan Kaden; Johanna Kölln; Markus Enzelberger; Stefanie Urlinger
Journal:  MAbs       Date:  2013-04-09       Impact factor: 5.857

5.  From deep sequencing to actual clones.

Authors:  Sara D'Angelo; Sandeep Kumar; Leslie Naranjo; Fortunato Ferrara; Csaba Kiss; Andrew R M Bradbury
Journal:  Protein Eng Des Sel       Date:  2014-09-01       Impact factor: 1.650

6.  Biopharmaceutical benchmarks 2014.

Authors:  Gary Walsh
Journal:  Nat Biotechnol       Date:  2014-10       Impact factor: 54.908

7.  Discovery of high affinity anti-ricin antibodies by B cell receptor sequencing and by yeast display of combinatorial VH:VL libraries from immunized animals.

Authors:  Bo Wang; Chang-Han Lee; Erik L Johnson; Christien A Kluwe; Josephine C Cunningham; Hidetaka Tanno; Richard M Crooks; George Georgiou; Andrew D Ellington
Journal:  MAbs       Date:  2016-05-25       Impact factor: 5.857

8.  Human combinatorial Fab library yielding specific and functional antibodies against the human fibroblast growth factor receptor 3.

Authors:  Robert Rauchenberger; Eric Borges; Elisabeth Thomassen-Wolf; Eran Rom; Rivka Adar; Yael Yaniv; Michael Malka; Irina Chumakov; Sarit Kotzer; Dalia Resnitzky; Achim Knappik; Silke Reiffert; Josef Prassler; Karin Jury; Dirk Waldherr; Susanne Bauer; Titus Kretzschmar; Avner Yayon; Christine Rothe
Journal:  J Biol Chem       Date:  2003-07-03       Impact factor: 5.157

9.  Beyond natural antibodies: the power of in vitro display technologies.

Authors:  Andrew R M Bradbury; Sachdev Sidhu; Stefan Dübel; John McCafferty
Journal:  Nat Biotechnol       Date:  2011-03       Impact factor: 54.908

10.  Tailored Immunogens Direct Affinity Maturation toward HIV Neutralizing Antibodies.

Authors:  Bryan Briney; Devin Sok; Joseph G Jardine; Daniel W Kulp; Patrick Skog; Sergey Menis; Ronald Jacak; Oleksandr Kalyuzhniy; Natalia de Val; Fabian Sesterhenn; Khoa M Le; Alejandra Ramos; Meaghan Jones; Karen L Saye-Francisco; Tanya R Blane; Skye Spencer; Erik Georgeson; Xiaozhen Hu; Gabriel Ozorowski; Yumiko Adachi; Michael Kubitz; Anita Sarkar; Ian A Wilson; Andrew B Ward; David Nemazee; Dennis R Burton; William R Schief
Journal:  Cell       Date:  2016-09-08       Impact factor: 41.582

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  26 in total

1.  Filtering Next-Generation Sequencing of the Ig Gene Repertoire Data Using Antibody Structural Information.

Authors:  Aleksandr Kovaltsuk; Konrad Krawczyk; Sebastian Kelm; James Snowden; Charlotte M Deane
Journal:  J Immunol       Date:  2018-11-05       Impact factor: 5.422

Review 2.  Considerations for the Design of Antibody-Based Therapeutics.

Authors:  Dennis R Goulet; William M Atkins
Journal:  J Pharm Sci       Date:  2019-06-04       Impact factor: 3.534

Review 3.  Biosensor-based epitope mapping of antibodies targeting the hemagglutinin and neuraminidase of influenza A virus.

Authors:  Zhu Guo; Jason R Wilson; Ian A York; James Stevens
Journal:  J Immunol Methods       Date:  2018-07-24       Impact factor: 2.303

4.  Immune repertoire mining for rapid affinity optimization of mouse monoclonal antibodies.

Authors:  Yi-Chun Hsiao; Yonglei Shang; Danielle M DiCara; Angie Yee; Joyce Lai; Si Hyun Kim; Diego Ellerman; Racquel Corpuz; Yongmei Chen; Sharmila Rajan; Hao Cai; Yan Wu; Dhaya Seshasayee; Isidro Hötzel
Journal:  MAbs       Date:  2019-03-22       Impact factor: 5.857

5.  Identification of Biomarkers Associated with Diagnosis of Osteoarthritis Patients Based on Bioinformatics and Machine Learning.

Authors:  Yihao Liang; Fangzheng Lin; Yunfei Huang
Journal:  J Immunol Res       Date:  2022-06-13       Impact factor: 4.493

6.  Characterization of Variable Region Genes and Discovery of Key Recognition Sites in the Complementarity Determining Regions of the Anti-Thiacloprid Monoclonal Antibody.

Authors:  Pengyan Liu; Yuanhao Guo; Shasha Jiao; Yunyun Chang; Ying Liu; Rubing Zou; Yihua Liu; Mengli Chen; Yirong Guo; Guonian Zhu
Journal:  Int J Mol Sci       Date:  2020-09-18       Impact factor: 5.923

7.  A single donor is sufficient to produce a highly functional in vitro antibody library.

Authors:  M Frank Erasmus; Sara D'Angelo; Fortunato Ferrara; Leslie Naranjo; André A Teixeira; Rebecca Buonpane; Shaun M Stewart; Horacio G Nastri; Andrew R M Bradbury
Journal:  Commun Biol       Date:  2021-03-19

8.  Strategies for Generating Diverse Antibody Repertoires Using Transgenic Animals Expressing Human Antibodies.

Authors:  Weihsu C Chen; Christopher M Murawsky
Journal:  Front Immunol       Date:  2018-03-07       Impact factor: 7.561

Review 9.  How B-Cell Receptor Repertoire Sequencing Can Be Enriched with Structural Antibody Data.

Authors:  Aleksandr Kovaltsuk; Konrad Krawczyk; Jacob D Galson; Dominic F Kelly; Charlotte M Deane; Johannes Trück
Journal:  Front Immunol       Date:  2017-12-08       Impact factor: 7.561

Review 10.  Computational Strategies for Dissecting the High-Dimensional Complexity of Adaptive Immune Repertoires.

Authors:  Enkelejda Miho; Alexander Yermanos; Cédric R Weber; Christoph T Berger; Sai T Reddy; Victor Greiff
Journal:  Front Immunol       Date:  2018-02-21       Impact factor: 7.561

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