Pulmonary large cell neuroendocrine carcinoma with adenocarcinoma-like features: napsin A expression and genomic alterations.

Pulmonary large cell neuroendocrine carcinoma (LCNEC) is a highly aggressive malignancy, which was recently found to comprise three major genomic subsets: small cell carcinoma-like, non-small cell carcinoma (predominantly adenocarcinoma)-like, and carcinoid-like. To further characterize adenocarcinoma-like subset, here we analyzed the expression of exocrine marker napsin A, along with TTF-1, in a large series of LCNECs (n=112), and performed detailed clinicopathologic and genomic analysis of napsin A-positive cases. For comparison, we analyzed napsin A expression in other lung neuroendocrine neoplasms (177 carcinoids, 37 small cell carcinomas) and 60 lung adenocarcinomas. We found that napsin A was expressed in 15% of LCNEC (17/112), whereas all carcinoids and small cell carcinomas were consistently negative. Napsin A reactivity in LCNEC was focal in 12/17 cases, and weak or moderate in intensity in all cases, which was significantly lower in the extent and intensity than seen in adenocarcinomas (P<0.0001). The combination of TTF-1-diffuse/napsin A-negative or focal was typical of LCNEC but was rare in adenocarcinoma, and could thus serve as a helpful diagnostic clue. The diagnosis of napsin A-positive LCNECs was confirmed by classic morphology, diffuse labeling for at least one neuroendocrine marker, most consistently synaptophysin, and the lack of distinct adenocarcinoma component. Genomic analysis of 14 napsin A-positive LCNECs revealed the presence of mutations typical of lung adenocarcinoma (KRAS and/or STK11) in 11 cases. In conclusion, LCNECs are unique among lung neuroendocrine neoplasms in that some of these tumors exhibit low-level expression of exocrine marker napsin A, and harbor genomic alterations typical of adenocarcinoma. Despite the apparent close biological relationship, designation of adeno-like LCNEC as a separate entity from adenocarcinoma is supported by their distinctive morphology, typically diffuse expression of neuroendocrine marker(s) and aggressive behavior. Further studies are warranted to assess the clinical utility and optimal method of identifying adenocarcinoma-like and other subsets of LCNEC in routine practice.

INTRODUCTION

Pulmonary large cell neuroendocrine carcinoma (LCNEC) is a highly aggressive malignancy, whose biological relationship with small cell versus non-small cell carcinoma has been a matter of a long-standing debate.[1] These tumors are defined by a constellation of features, which include 1) neuroendocrine morphology (nesting, peripheral palisading, rosettes), 2) expression of neuroendocrine markers (synaptophysin, chromogranin A, CD56), and 3) proliferation rate of >10 mitoses per 10 high-power fields (2 mm2), although in the vast majority of cases proliferation rates far exceed this threshold.[2] These tumors are distinguished from small cell carcinoma by cytologic features, including prominent nucleoli and/or more abundant cytoplasm, and typically larger nuclear size. However, existence of a spectrum of morphology in tumors classified as LCNEC is well known, with some cases exhibiting overt non-small cell features, while others closely approaching the morphology of small cell carcinoma.[3-5] Recently, using next-generation sequencing, we identified that LCNECs are molecularly heterogeneous, comprising three major molecular subsets: small cell-like (characterized by the joint RB1/TP53 inactivation), non-small cell/adenocarcinoma-like (characterized by the lack of RB1/TP53 co-alterations and frequent KRAS and/or STK11 mutations), and in a minority of cases - carcinoid-like (characterized by MEN1 mutations and low total mutation burden).[6] Notably, these molecular subsets could be predicted morphologically in most but not all cases.[6] Recently, small cell and adeno-like subsets of LCNEC were also identified in an expression profiling study.[7] In both studies, it was noted that some adeno-like tumors exhibited expression of a relatively recent pulmonary exocrine marker - napsin A. However, this finding was not explored in detail.

Napsin A (Novel aspartic proteinase of the pepsin family) is an enzyme involved in surfactant protein maturation, which is expressed in type II pneumocytes and in the majority of lung adenocarcinomas.[8] In the recent years, napsin A has emerged as a useful and broadly utilized diagnostic marker, which is helpful for confirming lung origin in carcinomas of unknown primary and for distinguishing lung adenocarcinomas from other pulmonary neoplasms, such as squamous cell carcinoma and mesothelioma.[9-12] Prior to napsin A, the predominant marker of lung glandular differentiation has been TTF-1. However, TTF-1 is not only a marker of pneumocytes lineage, but it is also a putative regulator of neurogenesis, which is well known to be expressed in small cell carcinoma and LCNEC of various sites.[13-15] This dual role of TTF-1 precludes its’ use as a marker of exocrine differentiation in lung tumors. Thus, emergence of napsin A presents a new opportunity to assess exocrine differentiation in LCNEC.

The literature on napsin A expression in LCNEC and other lung neuroendocrine neoplasms is relatively limited. Few available studies to date have focused primarily on napsin A expression in carcinoid tumors and small cell carcinomas, finding those tumors to be consistently napsin A-negative.[12, 16, 17] To our knowledge, only two prior studies included large series of LCNECs in the analysis of napsin A expression, and reported consistent absence of napsin A in those tumors.[16, 18] This contrasts with the finding from the above two studies showing napsin A expression in some LCNECs with adeno-like molecular features.[6, 14, 19] In addition, in our clinical practice, we have encountered a number of cases with classical features of LCNEC, which showed convincing labeling for napsin A. The goal of this study was therefore to clarify these conflicting observations regarding napsin A expression in LCNECs. Here we report on the analysis of napsin A along with TTF-1 expression in 112 LCNEC with detailed clinicopathologic and molecular characterization of napsin A-positive cases. For comparison, we analyzed napsin A expression in 177 carcinoids, 37 small cell carcinomas, and 60 lung adenocarcinomas.

MATERIALS & METHODS

Samples

The study was performed with the approval of the Memorial Sloan Kettering Cancer Center (New York, NY) Institutional Review Board. Napsin A expression was analyzed in a total of 112 LCNECs, of which 69 cases were represented in tissue microarrays and 43 cases - in whole-tissue sections. The latter group of tumors was also included in our prior publication.[6] All cases with napsin A expression identified in tissue microarrays, were subsequently analyzed using whole-tissue sections. Other analyzed lung neuroendocrine tumors included typical carcinoids (n=88), atypical carcinoids (n=89), and small cell carcinomas (n=37), which were studied in tissue microarrays. Tissue microarrays were constructed from surgical resection specimens performed at our institution between 1992 and 2007. The tumors were sampled in triplicate using 2-mm cores from representative tumor areas. As a control group, 60 consecutively-resected lung adenocarcinomas were analyzed in whole-tissue sections.

Immunohistochemistry

Immunohistochemistry was performed on a Ventana Discovery XT automated stainer (Ventana Medical Systems, Tucson, AZ, USA). Tissue-microarrays were analyzed using napsin A polyclonal antibody (rabbit polyclonal antibody; Ventana Medical Systems, Tucson, AZ, USA) and TTF-1 (mouse monoclonal; 8G7G3/1; Dako, Carpinteria, CA, USA). Given the data on potential lack of specificity of polyclonal napsin A antibody,[11, 20] all positive cases detected in tissue microarrays with polyclonal antibody were rested in whole-tissue section using both polyclonal and monoclonal napsin A antibodies (mouse monoclonal; clone IP64; Leica Biosystems, Buffalo Grove, IL, USA). Percentage of napsin A-immunoreactive tumor cells and the intensity of staining (1+ = weak; 2+ = moderate; 3+ = strong) were recorded. Whole-tissue sections from all napsin A-positive cases were additionally studied by immunohistochemistry with the following primary antibodies: synaptophysin (mouse monoclonal, clone Snp88; BioGenex, Fremont, CA, USA), chromogranin A (mouse monoclonal; clone LK2H10; Ventana Medical Systems, Tucson, AZ, USA), CD56 (mouse monoclonal; clone MRQ-42; Ventana Medical Systems, Tucson, AZ, USA), TTF-1 (see above) and Ki67 (mouse monoclonal; clone MIB1; Dako, Carpinteria, CA, USA).

Molecular studies

The cases were analyzed using methods that were previously described in detail elsewhere. These included Sequenom mass spectrometry genotyping for 92 hot-spot mutations in 8 oncogenes (including EGFR and KRAS)[21], fragment analysis for EGFR exon 19 and ERBB2 (HER2) deletions[21], and Illumina-based next-generation sequencing using MSK-IMPACT (Memorial Sloan Kettering-Integrated Mutation Profiling of Actionable Cancer Targets) platform for 341 (v3) or 410 (v4) cancer genes.[22]

Statistical Analysis

Statistical analysis was carried out using GraphPad software (GraphPad Software Inc, La Jolla, CA, USA). P values were calculated using Fisher’s exact or Student’s T test.

RESULTS

As summarized in Table 1, analysis of 326 neuroendocrine neoplasms revealed that napsin A labeling was absent in all typical carcinoids (n=88), atypical carcinoids (n=89) and small cell carcinomas (n=37). In contrast, napsin A reactivity was detected in a total of 17 of 112 (15%) LCNECs, which included 8/69 (12%) cases analyzed in tissue microarrays, and 9/43 (21%) of cases tested in whole-tissue sections.

TABLE 1

Screen of napsin A expression in lung neuroendocrine neoplasms.

	Number tested	Number (%) napsin A-positive
Typical carcinoid (TMA)	88	0
Atypical carcinoid (TMA)	89	0
Small cell carcinoma (TMA)	37	0
Large cell neuroendocrine carcinoma
All cases combined	112	17 (15%)
-TMA	−69	−8 (12%)
-Whole-tissue sections	−43	−9 (21%)

TMA = tissue microarrays

All napsin A positive LCNECs (n=17) identified in the above screen were further studied in whole-tissue sections. First, napsin A expression detected was confirmed in whole-tissue sections using both polyclonal and monoclonal napsin A antibodies, which showed identical reactivities. Second, as shown in Table 2, quantitation of napsin A expression showed that labeling was focal (≤50% of tumor cells labeling) in 71% (12/17) of cases, while in the remaining 5 cases (20%) expression was diffuse (70%-90% of tumors cells labeling). In all cases, the intensity of napsin A labeling was weak to moderate (1-2+), with none of the cases showing (3+) intensity. The overall mean±standard deviation for the percentage of positive tumor cells and intensity of labeling for napsin A was 34±32% and 1.4±0.4, respectively. This extent and intensity of napsin A labeling was significantly lower than that seen in lung adenocarcinomas, which typically showed more diffuse staining for napsin A (93±34%; P=<0.0001) with significantly higher intensity (2.6±1.4; P=<0.0001) [Table 3]. In particular, in contrast to LCNECs, the vast majority of adenocarcinomas showed strong (3+) intensity of napsin A labeling. Representative cases of napsin A-positive LCNECs are illustrated in Figure 1 and Figure 2, and contrast in the extent and intensity of labeling with adenocarcinomas is illustrated in Figure 3. Notably, given that intense napsin A reactivity in entrapped pneumocytes and alveolar histiocytes is a well-known pitfall for false-positive interpretation of napsin A as tumor cell staining,[23] we ensured that in all cases, positive labeling was clearly present in tumor cells (see Figure 1 and Figure 2).

TABLE 2

Analysis of napsin A-positive large cell neuroendocrine carcinomas in whole-tissue sections.

	Napsin A		TTF-1	Synapto-physin	Chromo-granin	CD56	Ki-67
	Percentage	Intensity
Case 1	10%	1+	Dif	Dif	Foc	0	40%
Case 2	50%	1.5+	Dif	Dif	0	0	50%
Case 3	5%	1.5+	Dif	Dif	Dif	Dif	50%
Case 4	70%	1.5+	Dif	Foc	0	Dif	80%
Case 5	10%	1+	Dif	Dif	Foc	0	50%
Case 6	10%	1+	Dif	Dif	Dif	Foc	50%
Case 7	10%	1.5+	Dif	Foc	Foc	Dif	60%
Case 8	5%	1+	Foc	Dif	Dif	0	50%
Case 9 (ID 42)*	10%	2+	na	Dif	0	na	50%
Case 10 (ID 49)*	90%	2+	Dif	Dif	Dif	na	40%
Case 11 (ID 28)*	20%	1+	Dif	Dif	0	Dif	80%
Case 12 (ID 32)*	80%	2+	Dif	Dif	0	Dif	80%
Case 13 (ID 59)*	90%	2+	Dif	Dif	Dif	0	60%
Case 14 (ID 38)*	70%	1.5+	Dif	Dif	0	Dif	70%
Case 15 (ID 40)*	20%	1.5+	Dif	Dif	Foc	Foc	80%
Case 16 (ID 39)*	10%	1+	Dif	Dif	Dif	Dif	70%
Case 17 (ID 64)*	20%	1+	Dif	Foc	Foc	Foc	50%
Summary	Mean±SD:34±32%	Mean±SD:1.4±0.4	% positive:100%	% positive:100%	% positive:65%	% positive:67%	Mean±SD:60±14%

Foc = focal (≤50% tumor cells labeling), Dif = diffuse (>50% tumor cells labeling), na = not available

Shown in parenthesis are corresponding case IDs from Rekhtman et al[6].

TABLE 3

Comparison of napsin A and TTF-1 expression in large cell neuroendocrine carcinoma versus lung adenocarcinoma.

	LCNEC (n=112)	Adenocarcinoma (n=60)	p value
Napsin A expression
Napsin-A-positive: n (%)	17 (15%)	51 (85%)	0.0001
Extent of labeling in positive cases: mean±SD	34±32%	93±34%	<0.0001
Intensity of labeling in positive cases: mean±SD	1.4±0.4	2.6±1.4	<0.0001
Napsin A/TTF-1 joint expression*
Napsin A(+)/TTF-1(+)	16 (16%)	51 (85%)	< 0.0001
Napsin A(−)/TTF-1(+)	47 (44%)1	2 (3%)2
Napsin A(+)/TTF-1(−)	0	0
Napsin A(−)/TTF-1(−)	43 (41%)	7 (12%)

TTF-1 result was not available for 6 LCNECs. SD = standard deviation

Extent of TTF-1 expression TTF-1(+) LCNECs was strong/diffuse in most cases.

In both cases of Napsin A(−)/TTF-1(+) adenocarcinomas, TTF-1 expression was weak/focal.

Figure 1

Example of LCNEC with focal napsin A expression (case ID 16 in Table 2). (A) H&E sections illustrate classic LCNEC morphology, including nested growth pattern with peripheral nuclear palisading, frequent rosette-like arrangements, and areas of geographic necrosis. (B) Higher-power image illustrates non-small cell cytomorphology - moderate volume of cytoplasm and evident nucleoli. Panels C and D illustrate weak and focal but convincing granular cytoplasmic napsin A labeling. Panel E illustrates diffuse labeling for synaptophysin. F. Ki67 marker confirms high proliferation rate (70%).

Figure 2

Example of LCNEC with diffuse weak to moderate napsin A expression (case ID 4 in Table 2). H&E sections (A,B) illustrate neuroendocrine morphology - nested and trabecular growth pattern with peripheral nuclear palisading, and overtly non-small cell cytology - prominent nucleoli with moderate amount of cytoplasm. Tumor has amphophilic cytoplasmic commonly seen in LCNEC. This type of morphology enters in the differential diagnosis with solid adenocarcinoma. Panels C and D illustrate napsin A labeling in the majority of tumor cells, which shows typical granular cytoplasmic reactivity with variably-sized granules. Napsin A expression is seen in the absence of entrapped pneumocytes or histiocytes, confirming the specificity of labelling. Panel E illustrates focal labeling for synaptophysin (SYN) in the same tumor areas as those labeling for napsin A. F. Ki67 confirms high proliferation rate (80%).

Figure 3

Contrast in intensity of napsin A reactivity in LCNEC (A and B) and lung adenocarcinoma (C and D). Intense (3+) labeling typical of adenocarcinomas (D) was not seen in any LCNECs (B). The figure illustrates a case on adenocarcinoma with cribriform pattern, which enters in the close differential diagnosis with LCNEC. Cribriform spaces in adenocarcinoma tend to have more undulating outlines, with occasional slit-like lumens, whereas luminal borders in LCNEC are characteristically rosette-like, with rigid/punched-out outlines (arrowheads). Spaces in rosettes also tend to be smaller, pinpoint-like, compared to more variable luminal sizes in adenocarcinoma.

Analysis of joint expression of napsin A and TTF-1 in LCNEC versus lung adenocarcinomas (Table 3) showed that the most common profile in LCNEC was TTF-1-positive/napsin A negative (44%), whereas this dichotomous profile was rare in adenocarcinomas (3%; 2/60 cases). In both adenocarcinomas with TTF-1 expression in the absence of napsin A, TTF-1 was only weak/focal, whereas in LCNEC, TTF-1 expression was typically strong/diffuse in the absence of napsin A.

The review of morphology of napsin A-positive LCNECs in whole-tissue sections confirmed the classic features of LCNEC. Key features included organoid architecture, with tumor cells organized into solid nests and/or trabeculae with peripheral palisading, and rosette-like structures in most cases. Cytologically, tumor cells displayed prominent nucleoli and/or moderate to abundant cytoplasm. All cases showed high Ki-67 proliferation index (mean 60%; range 40-80%) [Table 2]. Despite the high proliferation rate, the tumors tended to have relatively uniform/monotonous round nuclei, typical of neuroendocrine neoplasms. There was no evidence of distinct conventional adenocarcinoma morphology in the form of lepidic, acinar, papillary, or micropapillary structures.

All napsin A-positive LCNECs were confirmed to label for at least one neuroendocrine marker in ≥10% of tumor cells (Table 2). Synaptophysin was positive in all 17 cases, with diffuse labeling (>50% tumor cells staining) in 14/17 (82%) cases. Staining for chromogranin A and CD56 was more variable, with reactivity in 65% and 67% of cases, respectively. In cases where staining for napsin A and neuroendocrine markers was available on consecutive sections, we confirmed in side-by-side comparison that napsin A was expressed in tumor areas that were also positive for neuroendocrine marker(s).

Clinicopathologic features of napsin A-positive LCNECs are summarized in Table 4. Patients were on average 64 years old, 65% were female, and all but one patient were smokers with a mean 44 pack-year smoking history. Following tumor resection, death of disease or tumor recurrence occurred in 53% of patients.

TABLE 4

Clinicopathologic features of napsin A-positive large cell neuroendocrine carcinomas.

	Age	Gender	Smoking pack years	Tumor Size (cm)	pTNM stage at resection	Vital status
Case 1	58	F	20	2.5	IIIA	na
Case 2	58	M	80	4.5	IB	DOD (1 year survival)
Case 3	66	M	100	10.2	IIIA	DOD (1 year survival)
Case 4	59	F	39	5.0	IIB	NED (8 years follow-up)
Case 5	54	M	40	2.8	IA	NED (8 years follow-up)
Case 6	73	M	na	5.5	IIIA	na
Case 7	66	F	40	1.6	IIA	DOD (4 year survival)
Case 8	64	F	17	1.1	IA	DOO (16 years follow-up)
Case 9	73	F	50	4.6	IB	DOD (4 yr survival)
Case 10	51	F	15	6	IIIA	DOD (1.5 yr survival)
Case 11	53	F	15	6.2	IIIA	NED (6 yr follow-up)
Case 12	68	M	37.5	4.5	IB	DOD (2 yr survival)
Case 13	67	F	0	1.6	IB	DOD (3 yr survival)
Case 14	67	F	45	4.6	IB	NED (4 yr follow-up)
Case 15	67	F	98	5.2	IB	NED (3 yr follow-up)
Case 16	79	F	62.5	2.1	IA	AWD (1 yr follow-up)
Case 17	65	M	46	7.8	IIB	NED (2 yr follow-up)
Summary:	Mean (range):64 (51-79)	F:M ratio:11:6	Mean (range):44 (0-100)	Mean (range):4.5 (1-10)	% stage I:53%	% disease recurrence and/or death of disease: 53%

NED = no evidence of disease; DOD = dead of disease; AWD = alive with disease; DOO = dead of other causes; na = not available

Genomic data were available for 14 napsin A-positive LCNECs (Table 5). Next-generation sequencing using MSK-IMPACT platform was available for 9 cases (cases 9-17); the detailed molecular results for these cases have been previously reported.[6] Five additional cases were analyzed by Sequenom mass-spectrometry genotyping for hot-spot mutations in 8 oncogenes, including KRAS. Overall, 11 of 14 tested tumors harbored mutations typical of lung adenocarcinoma - KRAS (n=5), STK11 (n=4) or both KRAS+STK11 (n=2). One additional tumor harbored HER2 insertion – an alteration also less frequently found in lung adenocarcinomas. One additional case harbored a HER2 insertion – also alteration typical of adenocarcinoma. Conversely, RB1 – the gene altered in nearly all small cell carcinomas – was intact in all but one of the cases. The sole case with RB1 mutation also harbored a KRAS mutation, and had a wild type TP53.

TABLE 5

Key genomic alterations in napsin A-positive large cell neuroendocrine carcinomas.

	Alterations typical of NSCLC: KRAS, STK11, other	Alteration typical of SCLC:RB1 mutation/loss	Molecular method
Case 1	Negative	na#	Sequenom Genotyping + Fragment analysis
Case 2	na	na
Case 3	na	na
Case 4	KRAS G12V	na#	Sequenom Genotyping + Fragment analysis
Case 5	ERBB2 (HER2) insertion	na#	Sequenom Genotyping + Fragment analysis
Case 6	na	na
Case 7	KRAS G12C	na#	Sequenom Genotyping + Fragment analysis
Case 8	Negative	na#	Sequenom Genotyping + Fragment analysis
Case 9 (ID 42)*	STK11 X97_splice	absent	NGS – MSK-IMPACT
Case 10 (ID 49)*	KRAS G12C + STK11 H168R	absent	NGS – MSK-IMPACT
Case 11 (ID 28)*	STK11 C278fs	absent	NGS – MSK-IMPACT
Case 12 (ID 32)*	KRAS G12C + STK11 V320fs	absent	NGS – MSK-IMPACT
Case 13 (ID 59)*	KRAS G12D	absent	NGS – MSK-IMPACT
Case 14 (ID 38)*	KRAS G12C	absent	NGS – MSK-IMPACT
Case 15 (ID 40)*	STK11 H107L	absent	NGS – MSK-IMPACT
Case 16 (ID 39)*	KRAS Q61L	RB1 V434fs	NGS – MSK-IMPACT
Case 17 (ID 64)*	STK11 E165*	absent	NGS – MSK-IMPACT

NSCLC – non small cell lung carcinoma, NGS – next generation sequencing, MSK-IMPACT - Memorial Sloan Kettering-Integrated Mutation Profiling of Actionable Cancer Targets platform, na – not available (molecular testing not performed), na# – Sequenom assay does not include RB1 gene testing

DISCUSSION

In this study, we examined expression of napsin A – a marker of exocrine differentiation – in a large series of LCNECs and other lung neuroendocrine neoplasms, and performed detailed clinicopathologic and genomic analysis of napsin A-positive cases. In agreement with prior reports, we confirmed that napsin A is consistently negative in lung carcinoids and small cell carcinomas.[12, 16] Conversely, we describe that while the majority of LCNECs are napsin A-negative, a subset of these tumors does express napsin A, typically at a lower level than seen in adenocarcinomas. The prevalence of napsin A expression in LCNEC was higher in whole-tissue sections (21%) than in tissue microarrays (12%), consistent with the known tendency of the latter to underestimate cases with focal reactivity. Thus, the true prevalence of napsin A in LCNEC is likely best reflected by the former value. We also show that the majority of napsin A-positive LCNECs harbor mutations typical of lung adenocarcinoma (KRAS and/or STK11) while lacking the key alteration of small cell carcinoma (RB1).

Following the description of the criteria for LCNEC in 1991,[24] the biological relationship of these tumors to other major lung cancer types has been debated,[25] given that they share phenotypic features with both small cell and non-small cell carcinomas. Recently, we described that molecularly, LCNEC comprises small cell-like, non-small cell/adeno-like, and in a minority of cases - carcinoid-like genomic subsets;[6] these subsets were also recently recognized in other recent studies.[7, 26-28] While in prior studies it was noted that napsin A was expressed in some LCNECs with adeno-like molecular features,[6, 7] here we expand on those observations in a larger series of LCNECs, focusing on clinicopathologic and genomic features of napsin A-positive cases. Overall, combined napsin A expression data and molecular findings from this and prior work[6, 7] support a close biological relationship and likely shared cell of origin for a subset of LCNECs and lung adenocarcinoma. Notably, in this study, we did not further address small cell-like and carcinoid-like subsets of LCNEC, and we emphasize that further studies are needed to assess the clinical utility and optimal method of identifying LCNEC subsets in routine practice. In particular, while evidence is already emerging on distinct clinical features of carcinoid-like subset,[26] further work is needed to compare clinical behavior of non-small cell versus small cell-like LCNEC subsets. In our prior study, we found that morphology corresponded to respective molecular subtypes in most cases, but substantial number of cases had indeterminate or mixed features.[6] This emphasizes that morphologic evaluation alone – in the absence of genomic testing – can only partially predict molecular subtype of LCNEC. Nevertheless, cases with classic LCNEC morphology as defined by the WHO classification[2] – organoid/trabecular architecture with nuclear palisading and non-small cell cytologic features – largely corresponded to non-small cell-like molecular subtype,[6] which is in line with morphologic features seen in tumors described in this study, as illustrated in Figures 1-3.

From the perspective of differential diagnosis, the key implication of our findings is for the distinction of LCNEC and adenocarcinoma. Some lung adenocarcinomas exhibit cribriform or solid growth patterns, where tumor nests may show peripheral nuclear palisading,[29] thus entering in a close differential diagnosis with LCNECs (as illustrated in Figures 2 and 3). This distinction may be particularly challenging in a small biopsy specimens, where neuroendocrine architecture may be difficult to appreciate. While in prior studies it was suggested that napsin A expression is entirely specific for adenocarcinoma and thus would exclude the diagnosis of LCNEC,[16, 18] our data suggest that napsin A expression, particularly if weak and focal, should not be regarded as a strict exclusion criterion for LCNEC. As such, the diagnosis should be made based on appropriate morphology and evidence of neuroendocrine marker expression, according to the standard criteria,[2] even in the presence of low-level expression of napsin A. On the other hand, our findings do suggest that intense (3+) labeling for napsin A would indeed favor the diagnosis of adenocarcinoma since all LCNECs in this series had weak or moderate intensity of napsin A expression, and expression was focal in the majority of cases. This is in line with our observations in combined carcinomas with LCNEC and adenocarcinoma components, in which transition from adenocarcinoma to LCNEC is consistently accompanied by a sharp decline in napsin A labeling, typically manifesting as complete loss but in some cases showing partially-retained expression (data not shown).

From the classification perspective however, one may wonder whether LCNEC with napsin A expression should instead be classified as “adenocarcinoma with neuroendocrine differentiation”, since napsin A is a marker of exocrine differentiation and given the similarity in major genomic alterations between these tumors. “Non-small cell carcinoma with neuroendocrine differentiation” is defined by WHO as conventional adeno- or squamous cell carcinoma, in which occult neuroendocrine marker expression is detected by immunohistochemistry in the absence of overt neuroendocrine morphology. This is seen in 10-20% of conventional adenocarcinomas,[19, 30, 31] and is in line with gene expression studies consistently detecting “neuroendocrine” subtype in non-small cell carcinomas, primarily adenocarcinomas.[32-34] The major difference from that category is that cases described in this study exhibited overt neuroendocrine morphology, as described above (organoid nesting, trabeculae, rosettes, with generally monotonous nuclei despite the high proliferative rate). Another consideration supporting a separate designation for these tumors is the fact that neuroendocrine marker expression in conventional non-small cell carcinomas tends to be focal and chromogranin A expression is particularly uncommon,[30] whereas almost all cases described here exhibited diffuse expression of at least one neuroendocrine marker, and most cases expressed chromogranin A at least focally. However, admittedly, some tumors meeting the criteria for LCNECs label for neuroendocrine markers only focally. In terms of clinical behavior, in this study, napsin A-positive LCNECs were associated with a high rate of post-surgical recurrence and/or death, even for stage I tumors, in line with prior data on LCNEC,[35] whereas neuroendocrine marker expression in conventional non-small cell carcinomas is currently thought to bear no clear impact on prognosis.[30] Lastly, even though major adeno-type alterations (KRAS, STK11) are shared between these tumors, in our prior study, we identified several molecular differences, including a particularly high rate of chromatin modifier gene alterations in adeno-like LCNECs,[6] suggesting that while related, these tumors are also molecularly distinct. While the above considerations support a separate designation of adeno-like LCNEC and adenocarcinoma with neuroendocrine differentiation/marker expression, it is likely that these tumors represent entities in a spectrum, such that some smoking-related adenocarcinomas may undergo neuroendocrine differentiation, possibly related in part to alterations in chromatin modifier genes. As such, there may be a continuum of neuroendocrine differentiation from cases only detectable by immunohistochemistry to cases with classic LCNEC morphology, and diagnostic difficulties may indeed arise in some “gray-zone” cases, as noted in prior publications.[1] Further studies, including at the molecular level, will be needed to better define the relationship between these tumors, and to further address the optimal diagnostic criteria.

Another consideration from a classification perspective is whether napsin A-positive LCNEC may qualify for the diagnosis of “combined LCNEC with adenocarcinoma”. Indeed, combined LCNEC and conventional non-small cell carcinomas, particularly adenocarcinomas, are fairy common.[2, 35] Against this, is the lack of morphologically-recognizable conventional adenocarcinoma component in tumors described here, whereas in the current WHO classification, the diagnosis of “combined” carcinomas is reserved for tumors with morphologically-separable neuroendocrine and non-neuroendocrine components. Conceptually, however, LCNECs with napsin A expression may be analogous to the largely historic category of “amphicrine” lung carcinomas – the term applied to tumors in which a combination of neuroendocrine and exocrine ultrastructural features is detected within a single cell by electron microscopy.[36]

Another helpful diagnostic observation from this study is that of a distinctive pattern of combined TTF-1/napsin A expression in LCNEC versus adenocarcinoma. While the majority of LCNECs have TTF-1-diffuse/napsin A-negative or focal profile, such profile is quite rare in adenocarcinoma, since adenocarcinomas with strong/diffuse TTF-1 expression typically also robustly express napsin A (although we have seen rare exceptions in our clinical practice, NR and PJ personal observations). Thus, this “discrepant” expression of TTF-1-diffuse/napsin A-negative or focal can serve as a helpful diagnostic clue to LCNEC (or small cell carcinoma), particularly in a setting of a small biopsy or cytology specimens.

Prior to this study, to our knowledge, napsin A expression had been noted only in several isolated cases of LCNEC.[7, 37, 38] Conversely, in two prior case series that included 106[16] and 47[18] LCNECs, no napsin A expression was identified in any tested tumors. The difference with our study may be attributable to staining techniques and/or scoring criteria. Indeed, >10% cut-off for percentage of positive tumor cells was used in both of those studies, and the latter study also required 2+ or greater staining intensity, whereas we included cases with any extent and intensity of convincing napsin A labeling. However, different thresholds may only partially explain the difference with our study, since only 8 of 17 napsin A-positive LCNECs in our series displayed labeling in 5-10% range, whereas other tumors displayed more diffuse labeling, albeit with weak to moderate intensity. The other potential contributing factor could be the inclusion criteria, since the diagnosis of LCNECs is known to show poor inter-observer agreement, even among experienced thoracic pathologists.[3, 5] We note that in three recent molecular studies,[18, 27, 39] LCNECs harbored lower rate of KRAS mutations than seen in our series,[6] further suggesting likely inter-observer variability in the current inclusion criteria for LCNEC, although regional differences in the prevalence of adeno-like subtype of LCNEC or technical differences in sequencing methods cannot be excluded.

In conclusion, here we show that LCNEC is unique among lung neuroendocrine neoplasms in that a subset of these tumors expresses napsin A, and we expand on prior finding that such tumors exhibit major genomic alterations typical of lung adenocarcinoma. Despite the apparent close biological relationship and likely shared cell of origin, adeno-like LCNECs show distinctive phenotypic properties and, based on prior data, do have some distinctive molecular alterations, supporting their classification as a separate entity from conventional adenocarcinoma. Further studies are needed to evaluate the clinical utility and method of distinguishing the subtypes of LCNEC in clinical practice.