Literature DB >> 28873173

Automated Photoreceptor Cell Identification on Nonconfocal Adaptive Optics Images Using Multiscale Circular Voting.

Jianfei Liu1, HaeWon Jung1, Alfredo Dubra2, Johnny Tam1.   

Abstract

Purpose: Adaptive optics scanning light ophthalmoscopy (AOSLO) has enabled quantification of the photoreceptor mosaic in the living human eye using metrics such as cell density and average spacing. These rely on the identification of individual cells. Here, we demonstrate a novel approach for computer-aided identification of cone photoreceptors on nonconfocal split detection AOSLO images.
Methods: Algorithms for identification of cone photoreceptors were developed, based on multiscale circular voting (MSCV) in combination with a priori knowledge that split detection images resemble Nomarski differential interference contrast images, in which dark and bright regions are present on the two sides of each cell. The proposed algorithm locates dark and bright region pairs, iteratively refining the identification across multiple scales. Identification accuracy was assessed in data from 10 subjects by comparing automated identifications with manual labeling, followed by computation of density and spacing metrics for comparison to histology and published data.
Results: There was good agreement between manual and automated cone identifications with overall recall, precision, and F1 score of 92.9%, 90.8%, and 91.8%, respectively. On average, computed density and spacing values using automated identification were within 10.7% and 11.2% of the expected histology values across eccentricities ranging from 0.5 to 6.2 mm. There was no statistically significant difference between MSCV-based and histology-based density measurements (P = 0.96, Kolmogorov-Smirnov 2-sample test). Conclusions: MSCV can accurately detect cone photoreceptors on split detection images across a range of eccentricities, enabling quick, objective estimation of photoreceptor mosaic metrics, which will be important for future clinical trials utilizing adaptive optics.

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Year:  2017        PMID: 28873173      PMCID: PMC5586244          DOI: 10.1167/iovs.16-21003

Source DB:  PubMed          Journal:  Invest Ophthalmol Vis Sci        ISSN: 0146-0404            Impact factor:   4.799


  51 in total

1.  MEMS-based adaptive optics scanning laser ophthalmoscopy.

Authors:  Yuhua Zhang; Siddharth Poonja; Austin Roorda
Journal:  Opt Lett       Date:  2006-05-01       Impact factor: 3.776

2.  Iterative voting for inference of structural saliency and characterization of subcellular events.

Authors:  Bahram Parvin; Qing Yang; Ju Han; Hang Chang; Bjorn Rydberg; Mary Helen Barcellos-Hoff
Journal:  IEEE Trans Image Process       Date:  2007-03       Impact factor: 10.856

3.  Blind image quality assessment through anisotropy.

Authors:  Salvador Gabarda; Gabriel Cristóbal
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2007-12       Impact factor: 2.129

4.  Large-field-of-view, modular, stabilized, adaptive-optics-based scanning laser ophthalmoscope.

Authors:  Stephen A Burns; Remy Tumbar; Ann E Elsner; Daniel Ferguson; Daniel X Hammer
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2007-05       Impact factor: 2.129

5.  Automated identification of cone photoreceptors in adaptive optics retinal images.

Authors:  Kaccie Y Li; Austin Roorda
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2007-05       Impact factor: 2.129

6.  Adaptive optics scanning laser ophthalmoscopy.

Authors:  Austin Roorda; Fernando Romero-Borja; William Donnelly Iii; Hope Queener; Thomas Hebert; Melanie Campbell
Journal:  Opt Express       Date:  2002-05-06       Impact factor: 3.894

7.  Adaptive optics flood-illumination camera for high speed retinal imaging.

Authors:  Jungtae Rha; Ravi S Jonnal; Karen E Thorn; Junle Qu; Yan Zhang; Donald T Miller
Journal:  Opt Express       Date:  2006-05-15       Impact factor: 3.894

8.  Adaptive optics scanning laser ophthalmoscopy images in a family with the mitochondrial DNA T8993C mutation.

Authors:  Michael K Yoon; Austin Roorda; Yuhua Zhang; Chiaki Nakanishi; Lee-Jun C Wong; Qing Zhang; Leslie Gillum; Ari Green; Jacque L Duncan
Journal:  Invest Ophthalmol Vis Sci       Date:  2008-11-07       Impact factor: 4.799

9.  High-resolution imaging with adaptive optics in patients with inherited retinal degeneration.

Authors:  Jacque L Duncan; Yuhua Zhang; Jarel Gandhi; Chiaki Nakanishi; Mohammad Othman; Kari E H Branham; Anand Swaroop; Austin Roorda
Journal:  Invest Ophthalmol Vis Sci       Date:  2007-07       Impact factor: 4.799

10.  Adaptive optics retinal imaging reveals S-cone dystrophy in tritan color-vision deficiency.

Authors:  Rigmor C Baraas; Joseph Carroll; Karen L Gunther; Mina Chung; David R Williams; David H Foster; Maureen Neitz
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2007-05       Impact factor: 2.129

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  18 in total

1.  Noninvasive near infrared autofluorescence imaging of retinal pigment epithelial cells in the human retina using adaptive optics.

Authors:  Tao Liu; HaeWon Jung; Jianfei Liu; Michael Droettboom; Johnny Tam
Journal:  Biomed Opt Express       Date:  2017-09-07       Impact factor: 3.732

2.  Comparison of confocal and non-confocal split-detection cone photoreceptor imaging.

Authors:  Nripun Sredar; Moataz Razeen; Bartlomiej Kowalski; Joseph Carroll; Alfredo Dubra
Journal:  Biomed Opt Express       Date:  2021-01-08       Impact factor: 3.732

3.  Longitudinal adaptive optics fluorescence microscopy reveals cellular mosaicism in patients.

Authors:  HaeWon Jung; Jianfei Liu; Tao Liu; Aman George; Margery G Smelkinson; Sarah Cohen; Ruchi Sharma; Owen Schwartz; Arvydas Maminishkis; Kapil Bharti; Catherine Cukras; Laryssa A Huryn; Brian P Brooks; Robert Fariss; Johnny Tam
Journal:  JCI Insight       Date:  2019-03-21

4.  Spatially Aware Dense-LinkNet Based Regression Improves Fluorescent Cell Detection in Adaptive Optics Ophthalmic Images.

Authors:  Jianfei Liu; Yoo-Jean Han; Tao Liu; Nancy Aguilera; Johnny Tam
Journal:  IEEE J Biomed Health Inform       Date:  2020-12-04       Impact factor: 5.772

5.  Cone Photoreceptor Cell Segmentation and Diameter Measurement on Adaptive Optics Images Using Circularly Constrained Active Contour Model.

Authors:  Jianfei Liu; HaeWon Jung; Alfredo Dubra; Johnny Tam
Journal:  Invest Ophthalmol Vis Sci       Date:  2018-09-04       Impact factor: 4.799

Review 6.  Adaptive optics imaging of the human retina.

Authors:  Stephen A Burns; Ann E Elsner; Kaitlyn A Sapoznik; Raymond L Warner; Thomas J Gast
Journal:  Prog Retin Eye Res       Date:  2018-08-27       Impact factor: 21.198

7.  Repeatability of Adaptive Optics Automated Cone Measurements in Subjects With Retinitis Pigmentosa and Novel Metrics for Assessment of Image Quality.

Authors:  Michael J Gale; Gareth A Harman; Jimmy Chen; Mark E Pennesi
Journal:  Transl Vis Sci Technol       Date:  2019-05-08       Impact factor: 3.283

8.  Automatic Detection of Cone Photoreceptors With Fully Convolutional Networks.

Authors:  Jared Hamwood; David Alonso-Caneiro; Danuta M Sampson; Michael J Collins; Fred K Chen
Journal:  Transl Vis Sci Technol       Date:  2019-11-12       Impact factor: 3.283

9.  The Reliability of Cone Density Measurements in the Presence of Rods.

Authors:  Jessica I W Morgan; Grace K Vergilio; Jessica Hsu; Alfredo Dubra; Robert F Cooper
Journal:  Transl Vis Sci Technol       Date:  2018-06-22       Impact factor: 3.283

10.  RAC-CNN: multimodal deep learning based automatic detection and classification of rod and cone photoreceptors in adaptive optics scanning light ophthalmoscope images.

Authors:  David Cunefare; Alison L Huckenpahler; Emily J Patterson; Alfredo Dubra; Joseph Carroll; Sina Farsiu
Journal:  Biomed Opt Express       Date:  2019-07-08       Impact factor: 3.562

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